BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 711578ce5f11603dc569e67820a7efb9.SwissProt.fasta
2 sequences; 240 total letters
Query= ACIAD1118
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
P77682 Prophage bactoprenol-linked glucose translocase homolog [E... 35.0 7e-08
Q9T1D7 Bactoprenol-linked glucose translocase [Shigella phage SfX] 34.3 1e-07
>P77682 Prophage bactoprenol-linked glucose translocase homolog
[Escherichia coli (strain K12)]
Length=120
Score = 35.0 bits (79), Expect = 7e-08
Identities = 27/88 (31%), Positives = 43/88 (49%), Gaps = 16/88 (18%)
Query 14 FARFGVIGICAACTH-----VCVVLVLTKMSIALAVANIAGFLVAFWVSYFGHLYFTFGH 68
FA++ IG+ H VC+ + T A+AN AGF+VA S+F + FTF
Sbjct 5 FAKYTSIGVLNTLIHWVVFGVCIYVAHTNQ----ALANFAGFVVAVSFSFFANAKFTF-- 58
Query 69 QASRSKRTLIKFILVACSGFLVNESLVV 96
++ T ++++L GF+ S V
Sbjct 59 ---KASTTTMRYMLYV--GFMGTLSATV 81
Score = 16.5 bits (31), Expect = 0.20
Identities = 6/31 (19%), Positives = 13/31 (42%), Gaps = 0/31 (0%)
Query 100 HISHLSNSFIVISAILCTSIISFLFNRYFAF 130
+++H + + + + SF N F F
Sbjct 28 YVAHTNQALANFAGFVVAVSFSFFANAKFTF 58
>Q9T1D7 Bactoprenol-linked glucose translocase [Shigella phage
SfX]
Length=120
Score = 34.3 bits (77), Expect = 1e-07
Identities = 27/88 (31%), Positives = 42/88 (48%), Gaps = 16/88 (18%)
Query 14 FARFGVIGICAACTH-----VCVVLVLTKMSIALAVANIAGFLVAFWVSYFGHLYFTFGH 68
FA++ IG+ H VC+ T A+AN AGF+VA S+F + FTF
Sbjct 5 FAKYTSIGVLNTLIHWVVFGVCIYAAHTNQ----AMANFAGFVVAVSFSFFANAKFTF-- 58
Query 69 QASRSKRTLIKFILVACSGFLVNESLVV 96
++ T ++++L GF+ S V
Sbjct 59 ---KASTTTMRYMLYV--GFMGTLSATV 81
Lambda K H a alpha
0.341 0.146 0.470 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 23868
Database: 711578ce5f11603dc569e67820a7efb9.SwissProt.fasta
Posted date: May 11, 2024 8:07 AM
Number of letters in database: 240
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40