BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 26a001121cf88ed1ab0757581a294b55.SwissProt.fasta
13 sequences; 8,717 total letters
Query= ACIAD1131
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Q5E2P0 Penicillin-binding protein activator LpoA [Aliivibrio fisc... 59.3 6e-13
A6TEG6 Penicillin-binding protein activator LpoA [Klebsiella pneu... 55.8 9e-12
Q6LME4 Penicillin-binding protein activator LpoA [Photobacterium ... 51.6 2e-10
C6CMD7 Penicillin-binding protein activator LpoA [Dickeya chrysan... 48.1 3e-09
A4WEW2 Penicillin-binding protein activator LpoA [Enterobacter sp... 47.8 4e-09
A9R1Q6 Penicillin-binding protein activator LpoA [Yersinia pestis... 46.6 8e-09
A7FDZ0 Penicillin-binding protein activator LpoA [Yersinia pseudo... 46.6 8e-09
D2A869 Penicillin-binding protein activator LpoA [Shigella flexne... 45.4 2e-08
Q3YX94 Penicillin-binding protein activator LpoA [Shigella sonnei... 45.1 3e-08
Q0T0D4 Penicillin-binding protein activator LpoA [Shigella flexne... 45.1 3e-08
P45464 Penicillin-binding protein activator LpoA [Escherichia col... 45.1 3e-08
Q8FDA1 Penicillin-binding protein activator LpoA [Escherichia col... 44.7 3e-08
D0ZBY2 Penicillin-binding protein activator LpoA [Edwardsiella ta... 43.1 1e-07
>Q5E2P0 Penicillin-binding protein activator LpoA [Aliivibrio
fischeri (strain ATCC 700601 / ES114)]
Length=603
Score = 59.3 bits (142), Expect = 6e-13
Identities = 81/370 (22%), Positives = 142/370 (38%), Gaps = 90/370 (24%)
Query 6 NSWLLIS----LAAFTSQAYAEVV-----------VILPETGPMARAATSIKHGFLSAYA 50
N WLL + A +T Q +++ ++LP +G ++ GF++A
Sbjct 228 NEWLLANPTHPAATYTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMM 287
Query 51 LS---DQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLARQDVEDVIKLN-PKVKVLT 106
D+ LK +++ +M + ++ Q VVGPL R +E+ LN ++ L
Sbjct 288 EDKERDEFTKLKVIDTQATSMAEIMTTLEKEQIQFVVGPLVRSKIEEFQSLNSTEIAQLA 347
Query 107 LNEVSAQAT--NVVQFSLSKQDDANSMVKMLQKDKIQELFVLRQQG------READTELY 158
LN S T N F+LS + +A L K + L QG +A ++ +
Sbjct 348 LNIPSEIDTDINSCYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLSQAFSDKW 407
Query 159 FMSV-----VSQFGQNIHLLEQVPQ--KLKKGQGLLLMGDSTWINQLQKLPK-----QGI 206
F +S FG L ++V ++ Q + ++ +L+ P+ +
Sbjct 408 FQLTAKRPSISYFGSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAV 467
Query 207 Y--AQAIAIVHDKPIPE------------------------------GLKFCDVPAL--- 231
Y A++ +V KP E G++F D+P L
Sbjct 468 YMVAKSSELVLLKPFIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNE 527
Query 232 -------YEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTLKGRT 284
Y++ WP + RL A G DA+ L + N+ ++G+T
Sbjct 528 NHSFKAQYDELWPKSSNG---------ETRLHALGMDAYQLVAELPQMKAVDNYRMEGKT 578
Query 285 GDLDVNSERV 294
G+L +N E V
Sbjct 579 GELSLNQECV 588
>A6TEG6 Penicillin-binding protein activator LpoA [Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=702
Score = 55.8 bits (133), Expect = 9e-12
Identities = 70/323 (22%), Positives = 114/323 (35%), Gaps = 60/323 (19%)
Query 29 PETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLA 88
P T P+ A + +A ++ LK ++ + + + Q +VVGPL
Sbjct 364 PATQPVTAPAAQPQPVVATA---ANPSAELKIYDTTTQPISQLLAQAQQDGATLVVGPLL 420
Query 89 RQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
+++VE+VIK N + VL LN E N+ F+LS +D+A + + + Q +L
Sbjct 421 KENVEEVIKSNTPLNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPLLL 480
Query 147 RQQGREAD-------TELYFMSVVSQFGQNIHLLEQVPQKLKKGQGLLLMG--------- 190
+G D E + S Q ++ + G G+ L G
Sbjct 481 VPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNGGGGIALSGTPVSTLPSA 540
Query 191 DSTWINQLQKLPKQG--------IYAQAIAIVHDKPI----------------------- 219
++ + ++P I A I + KP+
Sbjct 541 QNSILGSADEMPVSSGGSVDAAYILATPEQIAYIKPMIAMRNGSQSNVTLYASSRSAQGT 600
Query 220 --------PEGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVS 271
EGL++ ++P L + A RL A G DAW L +
Sbjct 601 AGPDFRLEMEGLQYSEIPMLAGSNPSLMQQALSAVRNDYSLARLYAMGADAWSLANHFTQ 660
Query 272 TPLIQNFTLKGRTGDLDVNSERV 294
F L G TGDL N + V
Sbjct 661 MRQTPGFELNGNTGDLTANQDCV 683
Score = 18.9 bits (37), Expect = 4.6
Identities = 8/39 (21%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSA 48
L+++ + + ++ + LP G + +I+ GF +A
Sbjct 246 LVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAA 284
>Q6LME4 Penicillin-binding protein activator LpoA [Photobacterium
profundum (strain SS9)]
Length=613
Score = 51.6 bits (122), Expect = 2e-10
Identities = 75/361 (21%), Positives = 140/361 (39%), Gaps = 83/361 (23%)
Query 6 NSWLLISLAAFTSQAYAE---VVVILPETGPMARAATSIKHGFLSAY---ALSDQKVALK 59
+ +L L A S A+ V ++LP TG +++ GF++A D L
Sbjct 244 HQYLPTELEAIMSMEVAQLDNVALLLPLTGRFESQGKAVRDGFINAMLDDTSRDTDTELT 303
Query 60 FVNSDQRNMKAVFKQNVGKKTQMVVGPLARQDVEDVIKLN-PKVKVLTLN---EVSAQAT 115
+++ +M A+ + TQ V+GPL ++ V + N ++ +L LN ++ T
Sbjct 304 VFDTEAESMTAIMAKLQANGTQFVIGPLRKEKVTAFQQSNTSQINLLALNQPEQLDVSQT 363
Query 116 NVVQFSLSKQDDANSMVKMLQKDKIQELFVLRQQ-------------------GREADTE 156
FSLS + +A + L Q VL + GR AD +
Sbjct 364 QSCYFSLSPEQEAEQAAQHLFAKGHQYPLVLAPKSKFGQRMTDAFNEQWQQLTGRNADID 423
Query 157 LY------------------FMSVVSQFGQNIHL-LEQVPQKLKKGQGLLLMGDSTWINQ 197
+ + +SQ Q + LE + + + L+ + + +
Sbjct 424 TFGSRKQIQQQISRIFGLNDSQARISQMNQLTGVKLESQQRSRRDTDAVYLIANKSELTL 483
Query 198 LQ-----------KLPKQGIYAQAIAIVH---DKPIPEGLKFCDVPAL----------YE 233
L+ K PK +YA + + D G++F D+P + ++
Sbjct 484 LKPFIEVAINPEVKPPK--LYASSRGNPNANSDNSELRGIEFSDIPLIINPELSFMERFD 541
Query 234 QQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTLKGRTGDLDVNSER 293
WP+ + + RL AFG DA+ + ++ N+T++G TG L ++++
Sbjct 542 SLWPNESNTSI---------RLHAFGMDAYKMVNELPQLRVVDNYTVQGMTGQLGIDNQC 592
Query 294 V 294
V
Sbjct 593 V 593
>C6CMD7 Penicillin-binding protein activator LpoA [Dickeya chrysanthemi
(strain Ech1591)]
Length=682
Score = 48.1 bits (113), Expect = 3e-09
Identities = 43/167 (26%), Positives = 71/167 (43%), Gaps = 12/167 (7%)
Query 33 PMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLARQDV 92
P AAT++ +A A + + +K ++ + + V Q +VGPL + +V
Sbjct 340 PTPAAATTVMPALTAATAGT---IPVKVYDTSNQALANVIAQAQKDGATTIVGPLLKNEV 396
Query 93 EDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVLRQQG 150
E + LNP + VL LN E N+ F+LS +D+A + + K Q +L +G
Sbjct 397 EQLPGLNPSLNVLALNQPEHIQPNPNICYFALSPEDEAADAAQFIHKQGKQHPLILAPRG 456
Query 151 READ--TELYFMSVVSQFG-----QNIHLLEQVPQKLKKGQGLLLMG 190
D + S Q G Q + + Q + G G+ L G
Sbjct 457 NLGDRVVAAFAKSWQQQSGGVVLQQRTGSMYDLKQAINSGAGIPLNG 503
Score = 29.6 bits (65), Expect = 0.002
Identities = 24/74 (32%), Positives = 31/74 (42%), Gaps = 1/74 (1%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL+F D+P L + Q RL A G DAW L + S +L
Sbjct 591 EGLQFSDIPLLTGASPALMQQVSTQFRNDYSLVRLFAMGMDAWKLASDF-SQLHQPGSSL 649
Query 281 KGRTGDLDVNSERV 294
G TG L +S+ V
Sbjct 650 SGATGILSASSDCV 663
Score = 19.6 bits (39), Expect = 2.7
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 24 VVVILPETGPMARAATSIKHGFLSA 48
+ ++LP G A +I+ GF +A
Sbjct 270 IALLLPLNGQAQAFANAIQQGFSAA 294
>A4WEW2 Penicillin-binding protein activator LpoA [Enterobacter
sp. (strain 638)]
Length=721
Score = 47.8 bits (112), Expect = 4e-09
Identities = 44/171 (26%), Positives = 70/171 (41%), Gaps = 20/171 (12%)
Query 29 PETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLA 88
P P A AAT+ G LK ++ + + V Q +VVGPL
Sbjct 384 PAAQPQAVAATTANPG-----------AELKIYDTSSQPLDQVLAQVQKDGASIVVGPLL 432
Query 89 RQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
+ +VE+++K N + VL LN E N+ F+LS +D+A + + + Q +L
Sbjct 433 KNNVEELMKSNTSLNVLALNQPEQVQNRANICYFALSPEDEARDAARHIHEQGKQAPLLL 492
Query 147 RQQGREAD-TELYFMSVVSQFGQNIHLLE------QVPQKLKKGQGLLLMG 190
+ D F Q G NI L + ++ + G G+ L G
Sbjct 493 TPRSALGDRVATAFAQEWQQLGGNIVLQQKFGSTSELRAGVNGGSGIALTG 543
Score = 36.6 bits (83), Expect = 1e-05
Identities = 21/74 (28%), Positives = 30/74 (41%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
+GL++ ++P L + A RL A G DAW L + + F L
Sbjct 629 DGLQYSEIPMLAGSNPALMQQALSSVRNDYSLARLYAMGVDAWALANHFTQMRQVPGFEL 688
Query 281 KGRTGDLDVNSERV 294
G TGDL + V
Sbjct 689 NGNTGDLTATQDCV 702
Score = 22.7 bits (47), Expect = 0.29
Identities = 10/39 (26%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSA 48
L+++ F + +++ ++LP G A +I+ GF +A
Sbjct 245 LVNVQNFQPASVSKIALLLPLNGQAAVFGRTIQQGFEAA 283
>A9R1Q6 Penicillin-binding protein activator LpoA [Yersinia pestis
bv. Antiqua (strain Angola)]
Length=657
Score = 46.6 bits (109), Expect = 8e-09
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 49/242 (20%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAY-------------------- 49
L ++ F+ + A++ ++LP +GP A +I+ GF +A
Sbjct 245 LTQISNFSQASTAKIALLLPLSGPAQVFADAIQQGFTAAQNGSAVTASVPVTPNVTESSP 304
Query 50 -----ALSDQKVA---------------LKFVNSDQRNMKAVFKQNVGKKTQMVVGPLAR 89
+SD A +K +++ + + A+ Q +VVGPL +
Sbjct 305 TDTAAVVSDDTPATLPAPVPPPVVTNAQVKIYDTNTQPLAALLAQAQQDGATLVVGPLLK 364
Query 90 QDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKML--QKDKIQELFV 145
+VE + + +L LN E S + N+ F+LS +D+A L Q+ ++ L V
Sbjct 365 PEVEQLSATPSTLNILALNQPEASNNSPNICYFALSPEDEARDAAHHLWEQQKRMPLLLV 424
Query 146 LRQQGREADTELYFMSVVSQFG-----QNIHLLEQVPQKLKKGQGLLLMGDSTWINQLQK 200
R E + + Q G QN ++ Q + G G+ L G ++ +
Sbjct 425 PRGALGERIAKAFADEWQKQGGQTVLQQNFGSTTELKQSINSGAGIRLTGTPVSVSNVAA 484
Query 201 LP 202
P
Sbjct 485 AP 486
Score = 40.0 bits (92), Expect = 1e-06
Identities = 24/74 (32%), Positives = 34/74 (46%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EG++F D+P + + A + RL A G DAW L + I F +
Sbjct 565 EGIQFSDIPLMAGSNPALLQQASAKYANDYSLVRLYAMGIDAWALANHFSEMRQIPGFQV 624
Query 281 KGRTGDLDVNSERV 294
KG TGDL +S+ V
Sbjct 625 KGVTGDLTASSDCV 638
Score = 18.1 bits (35), Expect = 8.0
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 0/18 (0%)
Query 3 NNKNSWLLISLAAFTSQA 20
+NK W L+++ A +A
Sbjct 60 DNKADWQLLAIRALLREA 77
>A7FDZ0 Penicillin-binding protein activator LpoA [Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758)]
Length=657
Score = 46.6 bits (109), Expect = 8e-09
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 49/242 (20%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAY-------------------- 49
L ++ F+ + A++ ++LP +GP A +I+ GF +A
Sbjct 245 LTQISNFSQASTAKIALLLPLSGPAQVFADAIQQGFTAAQNGSAVTASVPVTPNVTESSP 304
Query 50 -----ALSDQKVA---------------LKFVNSDQRNMKAVFKQNVGKKTQMVVGPLAR 89
+SD A +K +++ + + A+ Q +VVGPL +
Sbjct 305 TDTAAVVSDDTPATLPAPVTPPVVTNAQVKIYDTNTQPLAALLAQAQQDGATLVVGPLLK 364
Query 90 QDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKML--QKDKIQELFV 145
+VE + + +L LN E S + N+ F+LS +D+A L Q+ ++ L V
Sbjct 365 PEVEQLSATPSTLNILALNQPEASNNSPNICYFALSPEDEARDAAHHLWEQQKRMPLLLV 424
Query 146 LRQQGREADTELYFMSVVSQFG-----QNIHLLEQVPQKLKKGQGLLLMGDSTWINQLQK 200
R E + + Q G QN ++ Q + G G+ L G ++ +
Sbjct 425 PRGALGERIAKAFADEWQKQGGQTVLQQNFGSTTELKQSINSGAGIRLTGTPVSVSNVAA 484
Query 201 LP 202
P
Sbjct 485 AP 486
Score = 40.0 bits (92), Expect = 1e-06
Identities = 24/74 (32%), Positives = 34/74 (46%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EG++F D+P + + A + RL A G DAW L + I F +
Sbjct 565 EGIQFSDIPLMAGSNPALLQQASAKYANDYSLVRLYAMGIDAWALANHFSEMRQIPGFQV 624
Query 281 KGRTGDLDVNSERV 294
KG TGDL +S+ V
Sbjct 625 KGVTGDLTASSDCV 638
Score = 18.1 bits (35), Expect = 8.0
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 0/18 (0%)
Query 3 NNKNSWLLISLAAFTSQA 20
+NK W L+++ A +A
Sbjct 60 DNKADWQLLAIRALLREA 77
>D2A869 Penicillin-binding protein activator LpoA [Shigella flexneri
serotype X (strain 2002017)]
Length=678
Score = 45.4 bits (106), Expect = 2e-08
Identities = 34/137 (25%), Positives = 64/137 (47%), Gaps = 4/137 (3%)
Query 12 SLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAV 71
S+A+ + +++ P P+ +A + +SA A + LK ++ + + +
Sbjct 314 SVASPAQASVSDLTGDQPAAQPVPVSAPATSTAAVSAPA--NPSAELKIYDTSSQPLSQI 371
Query 72 FKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDAN 129
Q +VVGPL + +VE+++K N + VL LN E N+ F+LS +D+A
Sbjct 372 LSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEAR 431
Query 130 SMVKMLQKDKIQELFVL 146
+ ++ Q VL
Sbjct 432 DAARHIRDQGKQAPLVL 448
Score = 40.0 bits (92), Expect = 1e-06
Identities = 22/74 (30%), Positives = 32/74 (43%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL++ ++P L P + A R+ A G DAW L + +Q F +
Sbjct 586 EGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEI 645
Query 281 KGRTGDLDVNSERV 294
G TG L N + V
Sbjct 646 NGNTGSLTANPDCV 659
Score = 29.3 bits (64), Expect = 0.003
Identities = 31/140 (22%), Positives = 57/140 (41%), Gaps = 7/140 (5%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMK 69
L+++ AF + ++ ++LP G A +I+ GF +A + Q VA + + +
Sbjct 245 LVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAAD-- 302
Query 70 AVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLNEVSAQATNVVQFSLSKQDDAN 129
V +Q + V P A+ V D+ P + + VSA AT+ S A
Sbjct 303 -VAEQPQPQTADSVASP-AQASVSDLTGDQPAAQPV---PVSAPATSTAAVSAPANPSAE 357
Query 130 SMVKMLQKDKIQELFVLRQQ 149
+ + ++ QQ
Sbjct 358 LKIYDTSSQPLSQILSQVQQ 377
>Q3YX94 Penicillin-binding protein activator LpoA [Shigella sonnei
(strain Ss046)]
Length=678
Score = 45.1 bits (105), Expect = 3e-08
Identities = 32/120 (27%), Positives = 56/120 (47%), Gaps = 4/120 (3%)
Query 29 PETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLA 88
P P+ +A + +SA A + LK ++ + + + Q +VVGPL
Sbjct 331 PAAQPVPVSAPATSTAAVSAPA--NPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLL 388
Query 89 RQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
+ +VE+++K N + VL LN E N+ F+LS +D+A + ++ Q VL
Sbjct 389 KNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVL 448
Score = 40.0 bits (92), Expect = 1e-06
Identities = 22/74 (30%), Positives = 32/74 (43%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL++ ++P L P + A R+ A G DAW L + +Q F +
Sbjct 586 EGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEI 645
Query 281 KGRTGDLDVNSERV 294
G TG L N + V
Sbjct 646 NGNTGSLTANPDCV 659
Score = 28.5 bits (62), Expect = 0.004
Identities = 31/140 (22%), Positives = 57/140 (41%), Gaps = 7/140 (5%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMK 69
L+++ AF + ++ ++LP G A +I+ GF +A + Q VA + + +
Sbjct 245 LVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAAD-- 302
Query 70 AVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLNEVSAQATNVVQFSLSKQDDAN 129
V +Q + V P A+ V D+ P + + VSA AT+ S A
Sbjct 303 -VAEQPQPQTVDGVASP-AQASVSDLTGDQPAAQPV---PVSAPATSTAAVSAPANPSAE 357
Query 130 SMVKMLQKDKIQELFVLRQQ 149
+ + ++ QQ
Sbjct 358 LKIYDTSSQPLSQILSQVQQ 377
>Q0T0D4 Penicillin-binding protein activator LpoA [Shigella flexneri
serotype 5b (strain 8401)]
Length=678
Score = 45.1 bits (105), Expect = 3e-08
Identities = 32/120 (27%), Positives = 56/120 (47%), Gaps = 4/120 (3%)
Query 29 PETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLA 88
P P+ +A + +SA A + LK ++ + + + Q +VVGPL
Sbjct 331 PAAQPVPVSAPATSTAAVSAPA--NPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLL 388
Query 89 RQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
+ +VE+++K N + VL LN E N+ F+LS +D+A + ++ Q VL
Sbjct 389 KNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVL 448
Score = 40.0 bits (92), Expect = 1e-06
Identities = 22/74 (30%), Positives = 32/74 (43%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL++ ++P L P + A R+ A G DAW L + +Q F +
Sbjct 586 EGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEI 645
Query 281 KGRTGDLDVNSERV 294
G TG L N + V
Sbjct 646 NGNTGSLTANPDCV 659
Score = 28.5 bits (62), Expect = 0.004
Identities = 31/140 (22%), Positives = 57/140 (41%), Gaps = 7/140 (5%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMK 69
L+++ AF + ++ ++LP G A +I+ GF +A + Q VA + + +
Sbjct 245 LVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAAD-- 302
Query 70 AVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLNEVSAQATNVVQFSLSKQDDAN 129
V +Q + V P A+ V D+ P + + VSA AT+ S A
Sbjct 303 -VAEQPQPQTADGVASP-AQASVSDLTGDQPAAQPV---PVSAPATSTAAVSAPANPSAE 357
Query 130 SMVKMLQKDKIQELFVLRQQ 149
+ + ++ QQ
Sbjct 358 LKIYDTSSQPLSQILSQVQQ 377
>P45464 Penicillin-binding protein activator LpoA [Escherichia
coli (strain K12)]
Length=678
Score = 45.1 bits (105), Expect = 3e-08
Identities = 32/120 (27%), Positives = 56/120 (47%), Gaps = 4/120 (3%)
Query 29 PETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLA 88
P P+ +A + +SA A + LK ++ + + + Q +VVGPL
Sbjct 331 PAAQPVPVSAPATSTAAVSAPA--NPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLL 388
Query 89 RQDVEDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
+ +VE+++K N + VL LN E N+ F+LS +D+A + ++ Q VL
Sbjct 389 KNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVL 448
Score = 40.0 bits (92), Expect = 1e-06
Identities = 22/74 (30%), Positives = 32/74 (43%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL++ ++P L P + A R+ A G DAW L + +Q F +
Sbjct 586 EGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEI 645
Query 281 KGRTGDLDVNSERV 294
G TG L N + V
Sbjct 646 NGNTGSLTANPDCV 659
Score = 28.9 bits (63), Expect = 0.003
Identities = 31/140 (22%), Positives = 57/140 (41%), Gaps = 7/140 (5%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMK 69
L+++ AF + ++ ++LP G A +I+ GF +A + Q VA + + +
Sbjct 245 LVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAAD-- 302
Query 70 AVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLNEVSAQATNVVQFSLSKQDDAN 129
V +Q + V P A+ V D+ P + + VSA AT+ S A
Sbjct 303 -VAEQPQPQTVDGVASP-AQASVSDLTGEQPAAQPV---PVSAPATSTAAVSAPANPSAE 357
Query 130 SMVKMLQKDKIQELFVLRQQ 149
+ + ++ QQ
Sbjct 358 LKIYDTSSQPLSQILSQVQQ 377
>Q8FDA1 Penicillin-binding protein activator LpoA [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=678
Score = 44.7 bits (104), Expect = 3e-08
Identities = 31/116 (27%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query 33 PMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMKAVFKQNVGKKTQMVVGPLARQDV 92
P++ ATS + A ++ LK ++ + + + Q +VVGPL + +V
Sbjct 337 PVSAPATSTA----AVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNV 392
Query 93 EDVIKLNPKVKVLTLN--EVSAQATNVVQFSLSKQDDANSMVKMLQKDKIQELFVL 146
E+++K N + VL LN E N+ F+LS +D+A + ++ Q VL
Sbjct 393 EELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVL 448
Score = 40.0 bits (92), Expect = 1e-06
Identities = 22/74 (30%), Positives = 32/74 (43%), Gaps = 0/74 (0%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EGL++ ++P L P + A R+ A G DAW L + +Q F +
Sbjct 586 EGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEI 645
Query 281 KGRTGDLDVNSERV 294
G TG L N + V
Sbjct 646 NGNTGSLTANPDCV 659
Score = 27.3 bits (59), Expect = 0.010
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 7/140 (5%)
Query 10 LISLAAFTSQAYAEVVVILPETGPMARAATSIKHGFLSAYALSDQKVALKFVNSDQRNMK 69
L+++ AF + ++ ++LP G A +I+ GF +A + Q V + + +
Sbjct 245 LVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVVAQVAAAPAAD-- 302
Query 70 AVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLNEVSAQATNVVQFSLSKQDDAN 129
V +Q + V P A+ V D+ P + + VSA AT+ S A
Sbjct 303 -VAEQPQPQTVDGVASP-AQASVSDLTGEQPAAQSV---PVSAPATSTAAVSAPANPSAE 357
Query 130 SMVKMLQKDKIQELFVLRQQ 149
+ + ++ QQ
Sbjct 358 LKIYDTSSQPLSQILSQVQQ 377
>D0ZBY2 Penicillin-binding protein activator LpoA [Edwardsiella
tarda (strain EIB202)]
Length=692
Score = 43.1 bits (100), Expect = 1e-07
Identities = 30/89 (34%), Positives = 38/89 (43%), Gaps = 1/89 (1%)
Query 221 EGLKFCDVPALYEQQWPDVYHAYLQKPEPMPYQRLIAFGGDAWMLTELYVSTPLIQNFTL 280
EG++F D+P L + A Q RL A G DAW L + I F +
Sbjct 600 EGVQFSDIPLLAGSDPAILQQAPAQYRNDYSLMRLYAMGADAWTLANHFAQLRQIPGFQV 659
Query 281 KGRTGDLDVNSERV-QRSVHCYQKIKQSI 308
+G TG L N V QR + Q K SI
Sbjct 660 QGATGTLSANDNCVIQRKLPWLQYQKGSI 688
Score = 34.3 bits (77), Expect = 7e-05
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (3%)
Query 58 LKFVNSDQRNMKAVFKQNVGKKTQMVVGPLARQDVEDVIKLNPKVKVLTLN--EVSAQAT 115
++ ++ + + A+ Q +VVGPL + +V+ + L+ + +L LN E
Sbjct 374 IQVYDTSSQPLPALLSQAQQAGASLVVGPLLKNNVDQLNTLSTPLNILALNQPEQVQNHP 433
Query 116 NVVQFSLSKQDDANSMVK 133
N+ F+LS +D+A +
Sbjct 434 NICYFALSPEDEARDAAR 451
Score = 18.1 bits (35), Expect = 8.0
Identities = 19/63 (30%), Positives = 30/63 (48%), Gaps = 6/63 (10%)
Query 152 EADTELYFMSVVSQFG---QNIHLLEQVPQKLKKGQGLLLMGDSTWINQLQKLPKQGIYA 208
+AD +L + + + G Q LL Q+P +L + Q L S + + P+Q A
Sbjct 62 KADWQLLAIRALLREGKLPQAADLLGQLPSQLSEAQQLEQRLVSAELEIARHAPQQ---A 118
Query 209 QAI 211
QAI
Sbjct 119 QAI 121
Lambda K H a alpha
0.320 0.134 0.386 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2113554
Database: 26a001121cf88ed1ab0757581a294b55.SwissProt.fasta
Posted date: May 20, 2024 7:38 AM
Number of letters in database: 8,717
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
