BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 96c5f79209b184e1928806f9a215007f.SwissProt.fasta
17 sequences; 7,368 total letters
Query= ACIAD1149
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
Q1QVM9 Ribonuclease T [Chromohalobacter salexigens (strain ATCC B... 224 8e-78
P46232 Ribonuclease T [Vibrio parahaemolyticus serotype O3:K6 (st... 224 9e-78
A1JP36 Ribonuclease T [Yersinia enterocolitica serotype O:8 / bio... 223 2e-77
Q7N3W0 Ribonuclease T [Photorhabdus laumondii subsp. laumondii (s... 223 2e-77
Q0I251 Ribonuclease T [Histophilus somni (strain 129Pt)] 223 2e-77
P57896 Ribonuclease T [Pasteurella multocida (strain Pm70)] 223 4e-77
Q9KT97 Ribonuclease T [Vibrio cholerae serotype O1 (strain ATCC 3... 223 5e-77
A4W9U3 Ribonuclease T [Enterobacter sp. (strain 638)] 221 2e-76
Q7MM91 Ribonuclease T [Vibrio vulnificus (strain YJ016)] 221 2e-76
A7MUL2 Ribonuclease T [Vibrio campbellii (strain ATCC BAA-1116)] 220 4e-76
Q9HY82 Ribonuclease T [Pseudomonas aeruginosa (strain ATCC 15692 ... 217 6e-75
P30014 Ribonuclease T [Escherichia coli (strain K12)] 206 8e-71
P13267 DNA polymerase III PolC-type [Bacillus subtilis (strain 168)] 48.5 7e-10
Q08880 DNA polymerase III subunit epsilon [Buchnera aphidicola su... 44.7 7e-09
Q9ZHF6 DNA polymerase III PolC-type [Thermotoga maritima (strain ... 45.1 1e-08
P0A1G9 DNA polymerase III subunit epsilon [Salmonella typhimurium... 42.7 3e-08
P0C0B7 DNA polymerase III PolC-type [Streptococcus pyogenes] 37.7 3e-06
>Q1QVM9 Ribonuclease T [Chromohalobacter salexigens (strain ATCC
BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)]
Length=221
Score = 224 bits (572), Expect = 8e-78
Identities = 109/195 (56%), Positives = 142/195 (73%), Gaps = 1/195 (1%)
Query 14 VIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGA 73
++ QRFRGFLPVVVD+ET GFNAQ DALLEIA + + + QG +P +++ H+ PFEGA
Sbjct 9 LMAQRFRGFLPVVVDLETGGFNAQRDALLEIAAVTLTMDAQGNLMPDDTHAFHVRPFEGA 68
Query 74 NLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDL 133
N+++ +LDF GID +P+R +A E AL IFK + + K QCT A+LVGHNA FD
Sbjct 69 NIEQAALDFTGIDLDSPLRQQVALSEHDALGEIFKPVRKAIKANQCTRAILVGHNAAFDQ 128
Query 134 GFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALY 193
GFL AA+ R K +NPFH FS FDT TL +++GQTVLA+AC AGI+FD AHSA Y
Sbjct 129 GFLNAAVERNGIK-RNPFHPFSCFDTATLGGLVYGQTVLARACRAAGIEFDNASAHSARY 187
Query 194 DTQKTAELFCYILNK 208
DT++TAELFC ++N+
Sbjct 188 DTERTAELFCAMVNR 202
>P46232 Ribonuclease T [Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633)]
Length=214
Score = 224 bits (571), Expect = 9e-78
Identities = 114/193 (59%), Positives = 144/193 (75%), Gaps = 4/193 (2%)
Query 17 QRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLD 76
+RFRG+ PVVVDVETAGFNAQTDALLEI + + +E+G+ P + H HI PFEGANL+
Sbjct 12 KRFRGYFPVVVDVETAGFNAQTDALLEICAVTLRMDEEGVLHPASTIHFHIEPFEGANLE 71
Query 77 RRSLDFIGI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGF 135
+ +L+F GI DPF+P+R A++E E ALK I+K I + +K C+ A++V HNA FDL F
Sbjct 72 KEALEFNGIRDPFSPLRGAVSEQE--ALKEIYKLIRKEQKASDCSRAIMVAHNAAFDLSF 129
Query 136 LQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDT 195
+ AA R K PFH F+ FDT TLS + +GQTVLAKAC AG++FD +EAHSALYDT
Sbjct 130 VNAANERCKLKRV-PFHPFATFDTATLSGLAYGQTVLAKACKTAGMEFDNREAHSALYDT 188
Query 196 QKTAELFCYILNK 208
QKTAELFC I+NK
Sbjct 189 QKTAELFCGIVNK 201
>A1JP36 Ribonuclease T [Yersinia enterocolitica serotype O:8 /
biotype 1B (strain NCTC 13174 / 8081)]
Length=215
Score = 223 bits (569), Expect = 2e-77
Identities = 109/191 (57%), Positives = 142/191 (74%), Gaps = 3/191 (2%)
Query 18 RFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDR 77
RFRG+ PVV+DVETAGFNAQTDALLEIA + + N+ G +P E+ H H++PFEGANL+
Sbjct 13 RFRGYYPVVIDVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEP 72
Query 78 RSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQ 137
+L F GIDP NP+R A++E + AL IFK++ + K+Q C A++V HNAHFD F+
Sbjct 73 EALAFNGIDPTNPLRGAVSEHD--ALHAIFKAVRKGLKEQGCNRAIIVAHNAHFDHSFVM 130
Query 138 AAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDTQK 197
AA R S K +NPFH F+ FDT LS ++ GQTVLAKAC+ AGI FD +AHSALYDT +
Sbjct 131 AAAERASLK-RNPFHPFATFDTAALSGLVLGQTVLAKACLTAGIPFDSSQAHSALYDTMQ 189
Query 198 TAELFCYILNK 208
TA+LFC ++N+
Sbjct 190 TAKLFCELVNR 200
>Q7N3W0 Ribonuclease T [Photorhabdus laumondii subsp. laumondii
(strain DSM 15139 / CIP 105565 / TT01)]
Length=217
Score = 223 bits (569), Expect = 2e-77
Identities = 110/201 (55%), Positives = 141/201 (70%), Gaps = 3/201 (1%)
Query 8 ENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHI 67
+ P V+ RFRG+ PVV+DVET GFNA+TDALLEIA + + + +G PGES H HI
Sbjct 3 DKKAPNVLSGRFRGYYPVVIDVETGGFNAKTDALLEIAAVTLEMDGEGWLTPGESLHFHI 62
Query 68 NPFEGANLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGH 127
PFEGANL+ +L+F GIDP NP+R A++E E AL IFK + + K C A++V H
Sbjct 63 EPFEGANLEPAALEFTGIDPLNPLRGAVSEYE--ALHAIFKMVRKGIKNNHCNRAIIVAH 120
Query 128 NAHFDLGFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKE 187
NA+FD F+ AA RT K +NPFH F+ FDT L ++ GQT+LAKACI AGI FD +
Sbjct 121 NANFDHSFVMAATERTGLK-RNPFHPFATFDTAALGGLVLGQTILAKACITAGIPFDNNQ 179
Query 188 AHSALYDTQKTAELFCYILNK 208
AHSALYDT +TAELFC ++N+
Sbjct 180 AHSALYDTDRTAELFCEMVNR 200
>Q0I251 Ribonuclease T [Histophilus somni (strain 129Pt)]
Length=218
Score = 223 bits (569), Expect = 2e-77
Identities = 112/196 (57%), Positives = 140/196 (71%), Gaps = 3/196 (2%)
Query 14 VIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGA 73
++ RFRGF PV++DVETAGFNAQTDALLE+A I + +E GL VP E H HI PFEGA
Sbjct 13 LLKNRFRGFFPVIIDVETAGFNAQTDALLELAAITLKMDENGLLVPDEKCHFHIQPFEGA 72
Query 74 NLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDL 133
N++ SL F GID NP+R A++E+ A+ +FK + +K+ C +V+V HNA FD
Sbjct 73 NINPESLKFNGIDIDNPLRGAISEN--VAMSELFKMVRHGQKKADCQRSVIVAHNATFDQ 130
Query 134 GFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALY 193
F+ AA RT K +NPFH FS+FDT TLS MFGQTVL K C A I FDGK+AHSALY
Sbjct 131 SFVMAAAERTKIK-RNPFHPFSIFDTATLSGFMFGQTVLVKGCQVANISFDGKKAHSALY 189
Query 194 DTQKTAELFCYILNKL 209
D ++TAELFCY++N L
Sbjct 190 DAERTAELFCYMVNHL 205
>P57896 Ribonuclease T [Pasteurella multocida (strain Pm70)]
Length=220
Score = 223 bits (567), Expect = 4e-77
Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 3/205 (1%)
Query 5 VTQENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYH 64
+ E ++ RFRG+ PV++DVETAGFNA+TDALLE+A I + NE GL VP ++ H
Sbjct 4 IQAEATNTHLLKHRFRGYFPVIIDVETAGFNAKTDALLELAAITVKMNEDGLLVPDQTCH 63
Query 65 AHINPFEGANLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVL 124
HI PF GAN++ SL F GID NP+R A++ E A+ +FK + + +K C +++
Sbjct 64 FHIEPFAGANINPESLQFNGIDIHNPLRGAVS--ETVAITELFKMVRKAQKAADCQRSII 121
Query 125 VGHNAHFDLGFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFD 184
V HNA FD FL AA RT K +NPFH F +FDT TLS MFGQTVL KAC A I FD
Sbjct 122 VAHNAAFDQSFLMAAAERTGVK-RNPFHPFGMFDTATLSGFMFGQTVLVKACQAAQIAFD 180
Query 185 GKEAHSALYDTQKTAELFCYILNKL 209
GK+AHSALYDT++TAELFCY++N L
Sbjct 181 GKQAHSALYDTERTAELFCYMVNHL 205
>Q9KT97 Ribonuclease T [Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961)]
Length=224
Score = 223 bits (567), Expect = 5e-77
Identities = 111/193 (58%), Positives = 142/193 (74%), Gaps = 4/193 (2%)
Query 17 QRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLD 76
+RFRG+ PVV+DVETAGFNAQTDALLEI + + +E G P + H H+ PFEGANL+
Sbjct 12 KRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLE 71
Query 77 RRSLDFIGI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGF 135
+ +L+F GI DPF+P+R A++ED ALK I+K + + +K C+ A++V HNAHFD F
Sbjct 72 KAALEFTGIYDPFSPLRGAVSEDH--ALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSF 129
Query 136 LQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDT 195
+ AA R K PFH F+ FDT TLS + FGQTVLAKAC AG++FD +EAHSALYDT
Sbjct 130 VMAASERCKLKRV-PFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDT 188
Query 196 QKTAELFCYILNK 208
QKTAELFC I+N+
Sbjct 189 QKTAELFCTIVNQ 201
>A4W9U3 Ribonuclease T [Enterobacter sp. (strain 638)]
Length=224
Score = 221 bits (563), Expect = 2e-76
Identities = 113/201 (56%), Positives = 141/201 (70%), Gaps = 3/201 (1%)
Query 8 ENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHI 67
+NA + RFRGF PVV+DVETAGFNA+TDALLEIA I + +EQG P + H H+
Sbjct 3 DNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLTPDTTLHFHV 62
Query 68 NPFEGANLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGH 127
+PFEGANL +L F GIDP NP+R A++E + AL I+K + + K C A++V H
Sbjct 63 DPFEGANLQPEALAFNGIDPHNPLRGAVSEYD--ALHAIYKMVRKGMKDSNCNRAIMVAH 120
Query 128 NAHFDLGFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKE 187
NA FD F+ AA R S K +NPFH F FDT LS + GQTVL+KACI AGIDFDG +
Sbjct 121 NATFDHSFMMAASERASLK-RNPFHPFVTFDTAALSGLALGQTVLSKACITAGIDFDGNQ 179
Query 188 AHSALYDTQKTAELFCYILNK 208
AHSALYDT++TAELFC I+N+
Sbjct 180 AHSALYDTERTAELFCEIVNR 200
>Q7MM91 Ribonuclease T [Vibrio vulnificus (strain YJ016)]
Length=217
Score = 221 bits (562), Expect = 2e-76
Identities = 116/205 (57%), Positives = 146/205 (71%), Gaps = 5/205 (2%)
Query 5 VTQENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYH 64
+T EN T + +RFRG+ PVVVDVETAGFNAQTDALLEI + + +E G P + H
Sbjct 1 MTVEN-TALTLKKRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIH 59
Query 65 AHINPFEGANLDRRSLDFIGI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAV 123
H+ PFEGANL++ +L+F GI DPF+P+R A+ E E ALK I+K I +K C+ A+
Sbjct 60 FHVEPFEGANLEKEALEFNGIRDPFSPLRGAVTEQE--ALKEIYKLIRREQKAADCSRAI 117
Query 124 LVGHNAHFDLGFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDF 183
+V HNA FDL F+ AA R K PFH F+ FDT TLS + +GQTVLAKAC AG++F
Sbjct 118 MVAHNAAFDLSFVNAANERCKLKRV-PFHPFATFDTATLSGLAYGQTVLAKACKTAGMEF 176
Query 184 DGKEAHSALYDTQKTAELFCYILNK 208
D +EAHSALYDT+KTAELFC I+NK
Sbjct 177 DNREAHSALYDTEKTAELFCGIVNK 201
>A7MUL2 Ribonuclease T [Vibrio campbellii (strain ATCC BAA-1116)]
Length=214
Score = 220 bits (560), Expect = 4e-76
Identities = 113/193 (59%), Positives = 142/193 (74%), Gaps = 4/193 (2%)
Query 17 QRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLD 76
+RFRG+ PVVVDVETAGFNAQTDALLEI + + +E G P + H HI PFEGANL+
Sbjct 12 KRFRGYFPVVVDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHIEPFEGANLE 71
Query 77 RRSLDFIGI-DPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGF 135
+ +L+F GI DPF+P+R A++E E ALK I+K I + +K C+ A++V HNA FDL F
Sbjct 72 KEALEFNGIRDPFSPLRGAVSEQE--ALKEIYKLIRKEQKAADCSRAIMVAHNAAFDLSF 129
Query 136 LQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDT 195
+ AA R K PFH F+ FDT TLS + +GQTVLAKAC AG++FD +EAHSALYDT
Sbjct 130 VNAANERCKLKRV-PFHPFATFDTATLSGLAYGQTVLAKACKAAGMEFDNREAHSALYDT 188
Query 196 QKTAELFCYILNK 208
Q+TAELFC I+NK
Sbjct 189 QQTAELFCGIVNK 201
>Q9HY82 Ribonuclease T [Pseudomonas aeruginosa (strain ATCC 15692
/ DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
PRS 101 / PAO1)]
Length=224
Score = 217 bits (553), Expect = 6e-75
Identities = 109/194 (56%), Positives = 142/194 (73%), Gaps = 3/194 (2%)
Query 15 IGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGAN 74
+ +RFRG+LPVVVDVET GFN+ TDALLEIA + +E+G P +Y I PFEGAN
Sbjct 22 MARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGAN 81
Query 75 LDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLG 134
++ +L+F GI +P+R+A+ E+ +AL IF+ I + K C A+LVGHN+ FDLG
Sbjct 82 IEPAALEFTGIKLDHPLRMAVQEE--AALTEIFRGIRKALKANGCKRAILVGHNSSFDLG 139
Query 135 FLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYD 194
FL AA+ART K +NPFH FS FDT TL+ + +GQTVLAKAC AG++FD +EAHSA YD
Sbjct 140 FLNAAVARTGIK-RNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYD 198
Query 195 TQKTAELFCYILNK 208
T+KTAELFC I+N+
Sbjct 199 TEKTAELFCGIVNR 212
>P30014 Ribonuclease T [Escherichia coli (strain K12)]
Length=215
Score = 206 bits (525), Expect = 8e-71
Identities = 108/201 (54%), Positives = 138/201 (69%), Gaps = 3/201 (1%)
Query 8 ENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHI 67
+NA + RFRGF PVV+DVETAGFNA+TDALLEIA I + +EQG +P + H H+
Sbjct 3 DNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHV 62
Query 68 NPFEGANLDRRSLDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGH 127
PF GANL +L F GIDP +P R A++E E AL IFK + + K C A++V H
Sbjct 63 EPFVGANLQPEALAFNGIDPNDPDRGAVSEYE--ALHEIFKVVRKGIKASGCNRAIMVAH 120
Query 128 NAHFDLGFLQAAIARTSTKNQNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKE 187
NA+FD F+ AA R S K +NPFH F+ FDT L+ + GQTVL+KAC AG+DFD +
Sbjct 121 NANFDHSFMMAAAERASLK-RNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQ 179
Query 188 AHSALYDTQKTAELFCYILNK 208
AHSALYDT++TA LFC I+N+
Sbjct 180 AHSALYDTERTAVLFCEIVNR 200
>P13267 DNA polymerase III PolC-type [Bacillus subtilis (strain
168)]
Length=1437
Score = 48.5 bits (114), Expect = 7e-10
Identities = 52/187 (28%), Positives = 80/187 (43%), Gaps = 31/187 (17%)
Query 25 VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84
VV DVET G +A D ++E+A + + + G + + + A NP L ++ G
Sbjct 422 VVFDVETTGLSAVYDTIIELAAVKV---KGGEII--DKFEAFANPHRP--LSATIIELTG 474
Query 85 IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIAR-- 142
I +D + I + R + +LV HNA FD+GFL A +
Sbjct 475 I----------TDDMLQDAPDVVDVIRDFR--EWIGDDILVAHNASFDMGFLNVAYKKLL 522
Query 143 TSTKNQNPFHSFSVFDTVTLSAVM---FGQTVLAKACIQAGIDFDGKEAHSALYDTQKTA 199
K +NP V DT+ L + F L C + D + + H A+YDT+ TA
Sbjct 523 EVEKAKNP-----VIDTLELGRFLYPEFKNHRLNTLCKK--FDIELTQHHRAIYDTEATA 575
Query 200 ELFCYIL 206
L +L
Sbjct 576 YLLLKML 582
>Q08880 DNA polymerase III subunit epsilon [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=233
Score = 44.7 bits (104), Expect = 7e-09
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 25/185 (14%)
Query 25 VVVDVETAGFNAQ-----TDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRS 79
+V+D ET G N+ ++EI I I+ G+ +H +I P D
Sbjct 8 IVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRR----FTGKKFHTYIKPNRLIESDASK 63
Query 80 LDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAA 139
+ I D + ++ + K I K K + L+ HNA FD+GF+
Sbjct 64 IHGITDDFLS---------DKPSFKDIAKDFFNYIKNSE-----LIIHNASFDVGFINQE 109
Query 140 IARTSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDTQK 197
+ + K Q+ + ++ DT+ ++ +F + L C++ I + H A+ D
Sbjct 110 FSMLTKKIQDISNFCNIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFL 169
Query 198 TAELF 202
+L+
Sbjct 170 LGKLY 174
>Q9ZHF6 DNA polymerase III PolC-type [Thermotoga maritima (strain
ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=1367
Score = 45.1 bits (105), Expect = 1e-08
Identities = 48/181 (27%), Positives = 79/181 (44%), Gaps = 29/181 (16%)
Query 25 VVVDVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIG 84
VV+D ET G + Q D ++EI + I + G V + YH I P + R+S + G
Sbjct 359 VVLDFETTGLDPQVDEIIEIGAVKI---QGGQIV--DEYHTLIKP--SREISRKSSEITG 411
Query 85 IDPFNPMRIAMAEDERSALKRIFKSIHEVRKQ--QQCTHAVLVGHNAHFDLGFLQAAIAR 142
I M E++R SI EV + +++V HNA+FD FL+ I +
Sbjct 412 ITQ------EMLENKR--------SIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKK 457
Query 143 TSTKN-QNPFHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDTQKTAEL 201
+ + P+ DT+ L+ + + + + H AL D + TA++
Sbjct 458 VMGLDWERPY-----IDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARVTAQV 512
Query 202 F 202
F
Sbjct 513 F 513
>P0A1G9 DNA polymerase III subunit epsilon [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=243
Score = 42.7 bits (99), Expect = 3e-08
Identities = 48/187 (26%), Positives = 79/187 (42%), Gaps = 29/187 (16%)
Query 25 VVVDVETAGFNA-----QTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRS 79
+V+D ET G N + ++EI + ++ + G ++H ++ P DR
Sbjct 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRR----LTGNNFHVYLKP------DR-- 56
Query 80 LDFIGIDPFNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFL--Q 137
+ + F IA DE K +F + + A LV HNA FD+GF+ +
Sbjct 57 --LVDPEAFGVHGIA---DEFLLDKPVFADVVD-EFLDYIRGAELVIHNASFDIGFMDYE 110
Query 138 AAIARTSTKNQNPFHSFSVFDTVTLSAVMF--GQTVLAKACIQAGIDFDGKEAHSALYDT 195
+ + N F V D++ L+ MF + L C + ID + H AL D
Sbjct 111 FGLLKRDIPKTNTF--CKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDA 168
Query 196 QKTAELF 202
Q AE++
Sbjct 169 QILAEVY 175
>P0C0B7 DNA polymerase III PolC-type [Streptococcus pyogenes]
Length=1465
Score = 37.7 bits (86), Expect = 3e-06
Identities = 52/198 (26%), Positives = 81/198 (41%), Gaps = 35/198 (18%)
Query 28 DVETAGFNAQTDALLEIACIPIVYNEQGLFVPGESYHAHINPFEGANLDRRSLDFIGIDP 87
DVET G +A + L++IA + +G V E + I+P G L + + GI
Sbjct 431 DVETTGLSAMNNDLIQIAASKMF---KGNIV--EQFDEFIDP--GHPLSAFTTELTGI-- 481
Query 88 FNPMRIAMAEDERSALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIARTSTKN 147
+ A+ + LK Q C ++LV HNA FD+GF+ A R +
Sbjct 482 -TDKHLQGAKPLVTVLKAF---------QDFCKDSILVAHNASFDVGFMNANYER----H 527
Query 148 QNPFHSFSVFDTVTLSAVMF------GQTVLAKACIQAGIDFDGKEAHSALYDTQKTAE- 200
P + V DT+ + ++ G L K Q +D H A YD + T
Sbjct 528 DLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKR-FQVSLD----HHHMANYDAEATGRL 582
Query 201 LFCYILNKLSPHLLDTFL 218
LF ++ + H + L
Sbjct 583 LFIFLKDAREKHGIKNLL 600
Lambda K H a alpha
0.326 0.138 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1159136
Database: 96c5f79209b184e1928806f9a215007f.SwissProt.fasta
Posted date: May 12, 2024 8:15 AM
Number of letters in database: 7,368
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
