BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 63f1d6b3bb0b781b844ad8000fe8ebbd.SwissProt.fasta
18 sequences; 5,233 total letters
Query= ACIAD1152
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
A7Z5E4 HTH-type transcriptional regulator YofA [Bacillus velezens... 109 1e-31
Q81VJ1 HTH-type transcriptional regulator CzcR [Bacillus anthracis] 107 6e-31
Q81IX0 HTH-type transcriptional regulator CzcR [Bacillus cereus (... 107 9e-31
Q63H01 HTH-type transcriptional regulator CzcR [Bacillus cereus (... 107 1e-30
Q73EY2 HTH-type transcriptional regulator CzcR [Bacillus cereus (... 107 1e-30
A0R8S0 HTH-type transcriptional regulator CzcR [Bacillus thuringi... 106 2e-30
O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis... 105 4e-30
Q6HPH4 HTH-type transcriptional regulator CzcR [Bacillus thuringi... 105 5e-30
P71025 HTH-type transcriptional regulator CzcR [Bacillus subtilis... 104 1e-29
Q44311 HTH-type transcriptional regulator SoxR [Arthrobacter sp. ... 99.0 1e-27
P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis... 94.7 5e-26
P20668 Transcriptional dual regulator GltC [Bacillus subtilis (st... 75.1 6e-19
O33812 Uncharacterized HTH-type transcriptional regulator in lacR... 62.4 1e-14
Q9HWH8 HTH-type transcriptional regulator NmoR [Pseudomonas aerug... 62.4 1e-14
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 56.2 2e-12
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 56.2 2e-12
P94403 HTH-type transcriptional regulator BsdA [Bacillus subtilis... 53.9 1e-11
P16931 HTH-type transcriptional regulator DgdR [Burkholderia cepa... 53.9 1e-11
>A7Z5E4 HTH-type transcriptional regulator YofA [Bacillus velezensis
(strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)]
Length=288
Score = 109 bits (273), Expect = 1e-31
Identities = 75/287 (26%), Positives = 147/287 (51%), Gaps = 9/287 (3%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
++ D++ F VA SI+ AA+ L+Y+QSN+T +I+++E QLF R +G+ LT
Sbjct 1 MESGDLKIFQAVARKGSISKAAESLHYVQSNVTNRIQQLERQLQTQLFYRTNRGMTLTPA 60
Query 63 GINVYQQFKKMLFTWEETENKIQQ---HDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G N+ + ++L E + Q+ + LR G+ + + F++ YP +
Sbjct 61 GENLLKDADRILQLLHEAQKTAQEAGDPNGPLRIGSLETAAAVHLPQFFTEYCSRYPKVQ 120
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
+++ TG T + + IL+ LD A+V G + ++L+ + +++LVL ++QD
Sbjct 121 LSLSTGDTHTLVQHILHYELDGAFVYGPVEYEDLEQVAVFQEELVLASNK--REGSLQDL 178
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
L + IL+ + C + + NI + + ++ EA+I Q GMG+S + S V
Sbjct 179 L-REPILYFAAGCSHRRKIKNILKEEAVPAHKIIEFGTLEAIIGAVQAGMGVSFLPASAV 237
Query 240 KKFNIQ---YYREVPELYRNIGLYLISRNNHVFTPIEKQFIDLNNAL 283
+ F + + E+PE +R++ + I +++ T ++ ++ AL
Sbjct 238 RYFQNRKNLFLHELPEQFRDMNISFIYQSDLFLTSAFEELLNGLKAL 284
>Q81VJ1 HTH-type transcriptional regulator CzcR [Bacillus anthracis]
Length=288
Score = 107 bits (268), Expect = 6e-31
Identities = 73/281 (26%), Positives = 146/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+TA+IK++EN LF R +G+ LT
Sbjct 1 MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 61 GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+L+ +N H I++
Sbjct 119 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKTFH--IEEF 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E L++ LG+GI+++ +S V
Sbjct 177 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETLLNSVALGLGITLVPQSAV 235
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 236 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 276
>Q81IX0 HTH-type transcriptional regulator CzcR [Bacillus cereus
(strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC
15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)]
Length=288
Score = 107 bits (267), Expect = 9e-31
Identities = 73/281 (26%), Positives = 146/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+TA+IK++EN LF R +G+ LT
Sbjct 1 MELRDLQIFKSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 61 GRKMLVYVSKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+LI +N H I++
Sbjct 119 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLITQNKAFH--IEEF 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E +++ LG+GI+++ +S V
Sbjct 177 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAV 235
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 236 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 276
>Q63H01 HTH-type transcriptional regulator CzcR [Bacillus cereus
(strain ZK / E33L)]
Length=288
Score = 107 bits (266), Expect = 1e-30
Identities = 72/281 (26%), Positives = 146/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+TA+IK++EN LF R +G+ LT
Sbjct 1 MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 61 GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+L+ +N H I++
Sbjct 119 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFH--IEEF 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E +++ LG+GI+++ +S V
Sbjct 177 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAV 235
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 236 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 276
>Q73EY2 HTH-type transcriptional regulator CzcR [Bacillus cereus
(strain ATCC 10987 / NRS 248)]
Length=288
Score = 107 bits (266), Expect = 1e-30
Identities = 72/281 (26%), Positives = 146/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+TA+IK++EN LF R +G+ LT
Sbjct 1 MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 61 GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+L+ +N H I++
Sbjct 119 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFH--IEEF 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E +++ LG+GI+++ +S V
Sbjct 177 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAV 235
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 236 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 276
>A0R8S0 HTH-type transcriptional regulator CzcR [Bacillus thuringiensis
(strain Al Hakam)]
Length=298
Score = 106 bits (265), Expect = 2e-30
Identities = 72/281 (26%), Positives = 146/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+TA+IK++EN LF R +G+ LT
Sbjct 11 MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAE 70
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 71 GRKMLVYVHKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 128
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+L+ +N H I++
Sbjct 129 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFH--IEEF 186
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E +++ LG+GI+++ +S V
Sbjct 187 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAV 245
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 246 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 286
>O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis
(strain 168)]
Length=285
Score = 105 bits (262), Expect = 4e-30
Identities = 71/290 (24%), Positives = 145/290 (50%), Gaps = 12/290 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
++ D++ F VA SIT AAQ LNY+QSN+TA++ +E N +LF R +G++LT
Sbjct 1 MESGDLKIFQAVAREGSITKAAQMLNYVQSNVTARVHNLEEDLNIRLFHRTNRGMKLTAA 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G N+ Q ++L ++ E +Q LR G+ ++ + + +P++
Sbjct 61 GENLLQYADQVLSLLDQAEKSTRMSRQPKGPLRIGSLETMAVTHLPEHAASFLRRFPEVD 120
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
+++ T T ++ +++L+ +D A+V G + ++ + + D+LVLI + E +
Sbjct 121 LSVNTADTHHLIQQVLDHKVDGAFVYGPVEHAAVRQLHVSHDELVLIS----SREGTAED 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
+ Q +LF C + + + + + ++ EA+I GMG +++ KS V
Sbjct 177 MLQQPMLFFGAGCSHRDRVKRLLEEAGIHNQKIIEFGTLEAIIKGVSAGMGTALLPKSAV 236
Query 240 ----KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFIDLNNALEK 285
+ N+ + ++P Y+++ + I R + T + F+D N +++
Sbjct 237 DGSEHRTNV-WIHQLPPSYQDLEIVFIYRKDFFITSAFQTFLDEINEMKR 285
>Q6HPH4 HTH-type transcriptional regulator CzcR [Bacillus thuringiensis
subsp. konkukian (strain 97-27)]
Length=288
Score = 105 bits (262), Expect = 5e-30
Identities = 71/281 (25%), Positives = 145/281 (52%), Gaps = 11/281 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F +VA+ S+++AA++LNY+QSN+T +IK++EN LF R +G+ LT
Sbjct 1 MELRDLQIFQSVADQGSVSSAAKELNYVQSNVTTRIKQLENELKTPLFYRHKRGMTLTAE 60
Query 63 GINVYQQFKKMLFTWEETENKI---QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + K+L +E + + +L+ GT ++ + + S Y++YP++
Sbjct 61 GRKMLVYVNKILQDVDELKQVFLDSETPSGILKIGTVETVSTLP--TILSSYYKSYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + E+L+ LD A++ G K ++ + ++L+L+ +N H I++
Sbjct 119 LSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKAFH--IEEF 176
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
++F ++ C Y + L+ D L + E +++ LG+GI+++ +S V
Sbjct 177 TTTPLLVF-NQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLVPQSAV 235
Query 240 ---KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
K + +PE Y +I I R + T + F+
Sbjct 236 HHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFL 276
>P71025 HTH-type transcriptional regulator CzcR [Bacillus subtilis
(strain 168)]
Length=288
Score = 104 bits (259), Expect = 1e-29
Identities = 73/256 (29%), Positives = 132/256 (52%), Gaps = 11/256 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ D++ F VA KSIT AA++LNY+QSN+TA+IK++EN LF R KGV L+
Sbjct 1 MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPE 60
Query 63 GINVYQQFKKMLFTWEETENKIQQHD---NVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + + K+L EE E + +L+ GT ++ + + + Y+ YP++
Sbjct 61 GRKMIEYVNKILKDVEELEQVFLDTEIPSGILKIGTVETVRILP--TIIASYYKKYPNVD 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
++++ G T + ++++N LD A++ G K L+ ++L L+ N NI+D
Sbjct 119 LSLQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTEKLTLVTSN--KTFNIED- 175
Query 180 LDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAKSLV 239
IL ++ C Y + L+ D + + E +++ LG+GI+++ +S V
Sbjct 176 FSTTPILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAV 235
Query 240 KKFNIQ---YYREVPE 252
+Q Y +PE
Sbjct 236 MHLAVQGKVYCHPLPE 251
>Q44311 HTH-type transcriptional regulator SoxR [Arthrobacter
sp. (strain TE1826)]
Length=289
Score = 99.0 bits (245), Expect = 1e-27
Identities = 77/290 (27%), Positives = 142/290 (49%), Gaps = 14/290 (5%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
++I D++ F V E S++ AA+ LNY+QS +T +I+K+E +LF R +G+ L
Sbjct 1 MEIKDLQIFQKVVEYGSVSKAAKSLNYVQSYVTVRIQKLEEELQTELFHRSSRGMVLNSE 60
Query 63 GINVYQQFKKMLFTWEETENKIQQHDN---VLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G + + ++ +E +Q DN L GT ++ + S S ++ YP +
Sbjct 61 GKTLLFYSQNIISMVDEMIKVVQDCDNPAGSLEIGTVETVN--KLPSILSAYHKKYPKID 118
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQ-D 178
+++ TG T + +++LN LD A+V G+ + + E++LVLI N++ + +
Sbjct 119 LSLITGVTEDLVDDVLNYKLDGAFVTGYYNHPQIIQYEVFEEELVLIS----NYDKLPFE 174
Query 179 CLDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMIAK-- 236
L ++ +L + C Y L+ D ++ E ++ G+GI++I K
Sbjct 175 ELKNKPLLVFKQGCSYRAKLEGWVRDEGEINAKIMEFGTMETILGSVIAGLGITIIPKST 234
Query 237 -SLVKKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFID-LNNALE 284
SL++ + E+PE Y I I R + T ++FI+ + NA E
Sbjct 235 ISLLEAEGVVRIYEIPEKYSKITTVFIHRADTFLTNALQKFIETIKNAPE 284
>P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis
(strain 168)]
Length=296
Score = 94.7 bits (234), Expect = 5e-26
Identities = 77/287 (27%), Positives = 140/287 (49%), Gaps = 16/287 (6%)
Query 1 MNIDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELT 60
MNI + + F+T A SI+ AA LNY QSN+T KI+++EN +LF R +G+ LT
Sbjct 1 MNIQLLQV--FLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLT 58
Query 61 VPGINVYQQFKKMLFTWEETENKIQQH---DNVLRFGTNTSLGGMRFYSSFSQLYQAYPD 117
PG + +K+L T EE + + LR G+ + + + YP+
Sbjct 59 PPGQILVSYSEKILHTIEEARAAMGESSAPSGPLRIGSMETTAAVWLPQLLAHYNNLYPN 118
Query 118 LSITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINH---E 174
+ + + TG T + +L+ L+ A++ G + +L + ++++VL+ +H
Sbjct 119 VDLNLVTGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLV--TSASHPVIS 176
Query 175 NIQDCLDHQNILFASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGISMI 234
+IQD + Q +L + C Y L++I + L +L EA+I G+GIS++
Sbjct 177 SIQD-VQTQTMLVFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGISLL 235
Query 235 AKSLV----KKFNIQYYREVPELYRNIGLYLISRNNHVFTPIEKQFI 277
+S++ K+ I+ + + + Y + I R + + TP F+
Sbjct 236 PRSIIASHEKEGRIRSH-TISDKYSFVSTMFIRRKDTLITPALSAFL 281
>P20668 Transcriptional dual regulator GltC [Bacillus subtilis
(strain 168)]
Length=300
Score = 75.1 bits (183), Expect = 6e-19
Identities = 69/311 (22%), Positives = 130/311 (42%), Gaps = 59/311 (19%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ +R F+ VAE + ++ AA L+ QS ++ +I +E N LF R+ + ++LT
Sbjct 1 MELRQLRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPI 60
Query 63 G----INVYQQFKKMLFTWEETENKIQQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDL 118
G I+V K + + E+ + + H ++ G TSL + S + YP +
Sbjct 61 GKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHV 120
Query 119 SITMKTGATGYIEEEILNGNLDIAYV-------------------------LGHP--KQK 151
++ G+ ++ E + N ++D+A + L HP KQK
Sbjct 121 EFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAKQK 180
Query 152 NLQYIQKAEDQLVLIGKNVINHENIQDCLDHQNILFASEQCCYATILDNIYTDYNLTKGE 211
+ I DQ VL + + E D +Q +A ++ T+GE
Sbjct 181 TVHLIDLRNDQFVLFPEGFVLREMAID---------TCKQAGFAPLVS--------TEGE 223
Query 212 LTHIYDHEALIHFSQLGMGISMIAKS----LVKKFNIQYYREVPELYRNIGLYLISRNNH 267
D +A+ GMG++++ +S +F ++ E P++ R +G +I N
Sbjct 224 -----DLDAIKGLVSAGMGVTLLPESTFAETTPRFTVKIPIEFPQVKRTVG--IIKPKNR 276
Query 268 VFTPIEKQFID 278
P F +
Sbjct 277 ELAPSANDFYE 287
>O33812 Uncharacterized HTH-type transcriptional regulator in
lacR 5'region [Staphylococcus xylosus]
Length=270
Score = 62.4 bits (150), Expect = 1e-14
Identities = 44/170 (26%), Positives = 83/170 (49%), Gaps = 5/170 (3%)
Query 14 VAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVPGINVYQQFKKM 73
V + +S T AA+ L Q +++ IK++EN Y+ ++F K + LT G +YQ +
Sbjct 4 VVKAQSFTKAAENLYTSQPSISRDIKRLENDYDVKVFEFKHSKMTLTSDGEKLYQYVLQR 63
Query 74 LFTWEETENKIQQHDNV----LRFGTNTSLGGMRFYSSFSQLYQAYPDLSITMKTGATGY 129
+ + ++ +N L+ G++ + G R ++L Q YP+L I + +
Sbjct 64 NYLEQALRQDLKMQNNAVAGDLKLGSSFTFGEYRLSRQLTKLAQMYPELHIHVHLDNSET 123
Query 130 IEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIGKNVINHENIQDC 179
I E+I N +D+ V + + A+D++VLI K + N++ C
Sbjct 124 IVEQIKNNIVDVGIVEKKIQNNAIISTPIAQDEIVLI-KKKSSSSNLETC 172
>Q9HWH8 HTH-type transcriptional regulator NmoR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=284
Score = 62.4 bits (150), Expect = 1e-14
Identities = 40/148 (27%), Positives = 72/148 (49%), Gaps = 2/148 (1%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+D+S + F VA S+T AAQ+L QSN+T +I+++E +LF+R K + LT
Sbjct 1 MDLSSLEIFRAVAHEASVTRAAQRLQRAQSNVTTRIRQLEEDLGVELFLRDGKRMSLTER 60
Query 63 GINVYQQFKKMLFTWEETENKIQ--QHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLSI 120
G +++L +E + + LR G+ S R + + ++A P +++
Sbjct 61 GSEFLAYAEQLLALADEARQSMHPAEPGGRLRLGSMESTAASRLPALLASYHKACPRVAL 120
Query 121 TMKTGATGYIEEEILNGNLDIAYVLGHP 148
+ TG + + + + LD A V P
Sbjct 121 EVSTGTSHALFDGVRARRLDCALVAAGP 148
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 56.2 bits (134), Expect = 2e-12
Identities = 53/246 (22%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ +R F+TV E +SI+ AA+KL Q ++ +I+K+E QLF R + ++T
Sbjct 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEA 60
Query 63 GINVYQQFKKMLFTWEETEN---KIQQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
G+ YQ ++L + + +I LR G +SL Q P++
Sbjct 61 GMFFYQHAVQILTHTAQASSMAKRIATVSQTLRIGYVSSLLYGLLPEIIYLFRQQNPEIH 120
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVL-------IGKNVIN 172
I + T + G +D+ + ++ I ++QL L + +
Sbjct 121 IELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIVLHKEQLKLAIHKHHHLNQFAAT 180
Query 173 HENIQDCLDHQNILF-ASEQCCYATILDNIYTDYNLTKGELTHIYDHEALIHFSQLGMGI 231
++ +D +L+ S++ +AT + +++T+ L +LT I + + + G G+
Sbjct 181 GVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGEGV 240
Query 232 SMIAKS 237
++ S
Sbjct 241 CIVPAS 246
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 56.2 bits (134), Expect = 2e-12
Identities = 34/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTVP 62
+++ I++F T+ + S AA+ LNY Q ++ ++K++E LF R K ++LT
Sbjct 1 MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFERG-KSLQLTKA 59
Query 63 GINVYQQFKKMLFTWEETENKI----QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDL 118
G Y++ +L +E ++ + ++ ++ G + + F YP +
Sbjct 60 GKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKI 119
Query 119 SITMKTGATGYIEEEILNGNLDIAYVLGHPK 149
++ +K +++L+G +D A V G P+
Sbjct 120 TVNIKVDDANTCSQKLLDGTIDFA-VCGEPE 149
>P94403 HTH-type transcriptional regulator BsdA [Bacillus subtilis
(strain 168)]
Length=290
Score = 53.9 bits (128), Expect = 1e-11
Identities = 42/169 (25%), Positives = 82/169 (49%), Gaps = 6/169 (4%)
Query 3 IDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIR-KPKGVELTV 61
+DI +R FIT+A+ + IT+AA+KL+ Q ++ ++K++E+ LF R K K + LT
Sbjct 1 MDIRQLRYFITIAQEQKITSAAKKLHMAQPPLSRQLKQLEDELGVVLFDRNKKKQMTLTY 60
Query 62 PGINVYQQFKKMLFTWEETENKIQQHD----NVLRFGTNTSLGGMRFYSSFSQLYQAYPD 117
G ++ K++L +E+ ++Q+ L G+ + +Q+ + YP
Sbjct 61 EGAVFLKRAKEILHRFEDAVIEVQELKEEVAGTLAVGSTIYCAAL-MLEKVTQIKERYPH 119
Query 118 LSITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLI 166
L+ + + E + + +D A K +Q+ Q + VL+
Sbjct 120 LTFNIWENEPATLLELLESRQIDAAVTTTLIKSDTVQFKQLDDIPCVLV 168
>P16931 HTH-type transcriptional regulator DgdR [Burkholderia
cepacia]
Length=294
Score = 53.9 bits (128), Expect = 1e-11
Identities = 40/168 (24%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query 2 NIDISDIRSFITVAELKSITAAAQKLNYLQSNMTAKIKKIENHYNKQLFIRKPKGVELTV 61
+++I +RSF+ +AE+++++ AA ++ QS ++ ++K++E+ ++ LF R +GV LT
Sbjct 13 SLEIDLLRSFVVIAEVRALSRAAARVGRTQSALSQQMKRLEDIVDQPLFQRTGRGVVLTH 72
Query 62 PGINVYQQFKKMLFTWEETENKI--QQHDNVLRFGTNTSLGGMRFYSSFSQLYQAYPDLS 119
PG + +++L +E + +RFG + Q +P
Sbjct 73 PGERLLVHAQRILRQHDEAMADLCGTGLTGTIRFGCPDDYAEVFLPPLLRQFSSQHPQAI 132
Query 120 ITMKTGATGYIEEEILNGNLDIAYVLGHPKQKNLQYIQKAEDQLVLIG 167
+ + G T + E++ +D+A + N I++ +QLV IG
Sbjct 133 VEIVCGPTPRLLEQLEKRAVDLAMISLPDDGANDDIIRR--EQLVWIG 178
Lambda K H a alpha
0.322 0.138 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1061605
Database: 63f1d6b3bb0b781b844ad8000fe8ebbd.SwissProt.fasta
Posted date: Jun 1, 2024 12:10 PM
Number of letters in database: 5,233
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
