BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1aff092a68ae0877731b528d2b63523d.SwissProt.fasta
13 sequences; 3,542 total letters
Query= ACIAD1161
Length=172
Score E
Sequences producing significant alignments: (Bits) Value
P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli ... 109 2e-34
Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis (s... 52.0 3e-12
A0R2D4 ECF RNA polymerase sigma factor SigE [Mycolicibacterium sm... 41.2 3e-08
O07627 RNA polymerase sigma factor YlaC [Bacillus subtilis (strai... 38.1 2e-07
P9WGG6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 36.6 1e-06
P9WGG7 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 36.6 1e-06
H8F0N6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 36.6 1e-06
Q8S905 Kinesin-like protein KIN-7A [Arabidopsis thaliana] 35.8 3e-06
Q06909 RNA polymerase sigma factor CarQ [Myxococcus xanthus] 34.7 4e-06
P10726 RNA polymerase sigma-D factor [Bacillus subtilis (strain 1... 34.3 6e-06
>P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli
(strain K12)]
Length=173
Score = 109 bits (273), Expect = 2e-34
Identities = 57/149 (38%), Positives = 92/149 (62%), Gaps = 0/149 (0%)
Query 15 LYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILID 74
LY H+GWL WL +KL SA +A+D+ QDTF +++ S+ L I+ P+++L T AKR+++D
Sbjct 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75
Query 75 RARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYID 134
R +E++YLE LA SPE+ ++ L L +LDGL + + AFL+ +D
Sbjct 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135
Query 135 GLSLVDIATRLKVTSRTIHYDLVKTLSHC 163
GL+ +IA +L V+ ++ + K + HC
Sbjct 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHC 164
>Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis
(strain 168)]
Length=187
Score = 52.0 bits (123), Expect = 3e-12
Identities = 40/151 (26%), Positives = 72/151 (48%), Gaps = 14/151 (9%)
Query 12 IAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQP-KAYLTTTAKR 70
I ++YK +Y Y+ LG+ AED+ Q+ F + + DI + +L A
Sbjct 23 IVDIYKDK---IYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATN 79
Query 71 ILIDRARHQKIEQSYL--EYLAQQNLTY-------DISPEQTVLAIDILNQLAWVLDGLA 121
+ IDR R +K + YL E + LT + PE V+++++ N + + L
Sbjct 80 LTIDRIRKKKPDY-YLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLP 138
Query 122 ERQQLAFLMHYIDGLSLVDIATRLKVTSRTI 152
++ + ++ YID LSL++I L + T+
Sbjct 139 DKYRTVIVLKYIDELSLIEIGEILNIPVGTV 169
>A0R2D4 ECF RNA polymerase sigma factor SigE [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=257
Score = 41.2 bits (95), Expect = 3e-08
Identities = 36/140 (26%), Positives = 60/140 (43%), Gaps = 1/140 (1%)
Query 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILI 73
EL + H +Y Y+ G+ +AED+ Q+TF ++ RS + +L + +
Sbjct 92 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFL 151
Query 74 DRARHQ-KIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHY 132
D R + +I L + D +PEQ + L LD L + A ++
Sbjct 152 DMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCD 211
Query 133 IDGLSLVDIATRLKVTSRTI 152
I+GLS +I L V T+
Sbjct 212 IEGLSYEEIGATLGVKLGTV 231
>O07627 RNA polymerase sigma factor YlaC [Bacillus subtilis (strain
168)]
Length=173
Score = 38.1 bits (87), Expect = 2e-07
Identities = 39/138 (28%), Positives = 62/138 (45%), Gaps = 12/138 (9%)
Query 12 IAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQ---QPKAYLTTTA 68
I +LY+ +Y + +L+++ E A+D+ QDTF K + GL + + +L T A
Sbjct 7 IEDLYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKAL--NGLASFRGHSSIRTWLYTIA 64
Query 69 KRILID----RARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQ 124
I+ ++Q E S E L Q TYD PEQ + L L L ++
Sbjct 65 HHTFINWYRRDVKYQFTEISKNEGLTQ--TTYD-QPEQYLSRTVKSETLRQELLKLKDQH 121
Query 125 QLAFLMHYIDGLSLVDIA 142
Q ++ LS +IA
Sbjct 122 QSVLILREFQELSYEEIA 139
>P9WGG6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=257
Score = 36.6 bits (83), Expect = 1e-06
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (1%)
Query 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILI 73
EL + H +Y Y+ G+ +AED+ Q+TF ++ RS + +L + +
Sbjct 86 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFL 145
Query 74 DRARHQ-KIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHY 132
D R + +I L + + +PEQ + L L L + A ++
Sbjct 146 DMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCD 205
Query 133 IDGLSLVDIATRLKVTSRTI 152
I+GLS +I L V T+
Sbjct 206 IEGLSYEEIGATLGVKLGTV 225
>P9WGG7 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=257
Score = 36.6 bits (83), Expect = 1e-06
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (1%)
Query 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILI 73
EL + H +Y Y+ G+ +AED+ Q+TF ++ RS + +L + +
Sbjct 86 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFL 145
Query 74 DRARHQ-KIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHY 132
D R + +I L + + +PEQ + L L L + A ++
Sbjct 146 DMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCD 205
Query 133 IDGLSLVDIATRLKVTSRTI 152
I+GLS +I L V T+
Sbjct 206 IEGLSYEEIGATLGVKLGTV 225
>H8F0N6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain ATCC 35801 / TMC 107 / Erdman)]
Length=257
Score = 36.6 bits (83), Expect = 1e-06
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (1%)
Query 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILI 73
EL + H +Y Y+ G+ +AED+ Q+TF ++ RS + +L + +
Sbjct 86 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFL 145
Query 74 DRARHQ-KIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHY 132
D R + +I L + + +PEQ + L L L + A ++
Sbjct 146 DMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCD 205
Query 133 IDGLSLVDIATRLKVTSRTI 152
I+GLS +I L V T+
Sbjct 206 IEGLSYEEIGATLGVKLGTV 225
>Q8S905 Kinesin-like protein KIN-7A [Arabidopsis thaliana]
Length=974
Score = 35.8 bits (81), Expect = 3e-06
Identities = 21/77 (27%), Positives = 40/77 (52%), Gaps = 1/77 (1%)
Query 56 DIQQPKAYLTTTAKRILIDRARHQKIEQSYLEYLAQQNLTYDISPEQ-TVLAIDILNQLA 114
+++ +AY+T +R+ + + Q + LE A Y + E+ T++ + NQ+A
Sbjct 728 NVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANDGAGYSVENEENTIMEDEEQNQVA 787
Query 115 WVLDGLAERQQLAFLMH 131
W + + ERQQ+ L H
Sbjct 788 WHITFIEERQQIIELWH 804
Score = 15.8 bits (29), Expect = 8.8
Identities = 6/13 (46%), Positives = 8/13 (62%), Gaps = 0/13 (0%)
Query 110 LNQLAWVLDGLAE 122
L +L W+ LAE
Sbjct 834 LRRLTWLEQHLAE 846
>Q06909 RNA polymerase sigma factor CarQ [Myxococcus xanthus]
Length=174
Score = 34.7 bits (78), Expect = 4e-06
Identities = 23/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query 14 ELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDI-QQPKAYLTTTAKRIL 72
+L+ H + G+L + + + AED+LQ TF +IRS+G + + +L T A
Sbjct 14 DLFARHAPRVQGFLARMVRNGALAEDLLQATFLSVIRSRGRYEPGTRFIPWLMTIAANAA 73
Query 73 IDRARHQKIEQSY 85
D RHQ+ +Y
Sbjct 74 RDALRHQRHVDAY 86
Score = 16.5 bits (31), Expect = 4.3
Identities = 8/22 (36%), Positives = 12/22 (55%), Gaps = 1/22 (5%)
Query 35 ENAEDVLQDTFTK-LIRSQGLL 55
+ A+D +D F + R QG L
Sbjct 6 DGAQDAFEDLFARHAPRVQGFL 27
>P10726 RNA polymerase sigma-D factor [Bacillus subtilis (strain
168)]
Length=254
Score = 34.3 bits (77), Expect = 6e-06
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query 68 AKRILIDRARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLA 127
A + ID H + + ++ + + + ++ PE+ ++ +++ QLA + L+E++QL
Sbjct 152 ANLLSIDEKLHDQDDGENIQVMIRDDK--NVPPEEKIMKDELIAQLAEKIHELSEKEQLV 209
Query 128 FLMHYIDGLSLVDIATRLKVTSRTI 152
+ Y + L+L +I L +++ I
Sbjct 210 VSLFYKEELTLTEIGQVLNLSTSRI 234
Lambda K H a alpha
0.325 0.137 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 403655
Database: 1aff092a68ae0877731b528d2b63523d.SwissProt.fasta
Posted date: Jun 3, 2024 2:58 PM
Number of letters in database: 3,542
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
