BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b9d8255c2d7e999a00972a7aa7bc4f87.SwissProt.fasta
1 sequences; 502 total letters
Query= ACIAD1176
Length=293
Score E
Sequences producing significant alignments: (Bits) Value
Q5WLU5 Lysine--tRNA ligase [Shouchella clausii (strain KSM-K16)] 36.2 8e-07
>Q5WLU5 Lysine--tRNA ligase [Shouchella clausii (strain KSM-K16)]
Length=502
Score = 36.2 bits (82), Expect = 8e-07
Identities = 14/33 (42%), Positives = 21/33 (64%), Gaps = 0/33 (0%)
Query 141 VEADPSWQQVHLLGKVLEKLPIPFWVSIYSGEA 173
VE PSW++VH++ + EK + FW + GEA
Sbjct 313 VELAPSWKRVHMVDAIKEKTGVDFWQQMSDGEA 345
Score = 14.6 bits (26), Expect = 5.1
Identities = 5/13 (38%), Positives = 8/13 (62%), Gaps = 0/13 (0%)
Query 188 EKDKVFFQDGVGT 200
E +VF +G+ T
Sbjct 252 EIGRVFRNEGIST 264
Score = 14.6 bits (26), Expect = 5.1
Identities = 6/23 (26%), Positives = 8/23 (35%), Gaps = 0/23 (0%)
Query 62 PQWSIVDSKSWISEIDHTERWNK 84
P W V I E + W +
Sbjct 317 PSWKRVHMVDAIKEKTGVDFWQQ 339
Lambda K H a alpha
0.321 0.138 0.446 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 124136
Database: b9d8255c2d7e999a00972a7aa7bc4f87.SwissProt.fasta
Posted date: May 11, 2024 10:00 AM
Number of letters in database: 502
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40