BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: dcfeead25b5ad3abfd03b8d093e163bd.SwissProt.fasta
           1 sequences; 274 total letters



Query= ACIAD1180

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A9KJR5 Urease accessory protein UreD [Lachnoclostridium phytoferm...  35.0    6e-07


>A9KJR5 Urease accessory protein UreD [Lachnoclostridium phytofermentans 
(strain ATCC 700394 / DSM 18823 / ISDg)]
Length=274

 Score = 35.0 bits (79),  Expect = 6e-07
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 18/106 (17%)

Query  42   LIAGSFLSVGWSLILGLFAFICISIYFLLDLANQTYIERQLLLLFLIPLTPIFLSAIRYN  101
            LIA   ++ GW     LF+      Y +LDL  + Y+E  L+LL  I LTP         
Sbjct  134  LIATDIITSGWDPKGNLFS------YHMLDLNTKVYLEDNLILLDHIRLTP---------  178

Query  102  LLSHSDHLQELESYQRNTHNDIFPLSSLSTFERELWKIQDNIDTQN  147
                S  L  +  ++  +H     + S  T E  +  + D ++TQN
Sbjct  179  ---GSQSLSSIGQFEEYSHLGTMIVVSEYTDESLISMLYDVMETQN  221


 Score = 14.6 bits (26),  Expect = 2.3
 Identities = 5/11 (45%), Positives = 8/11 (73%), Gaps = 0/11 (0%)

Query  155  KIQNKTLIQEM  165
            K + KT+ Q+M
Sbjct  14   KKRGKTIAQDM  24



Lambda      K        H        a         alpha
   0.327    0.139    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 55776


  Database: dcfeead25b5ad3abfd03b8d093e163bd.SwissProt.fasta
    Posted date:  Jun 2, 2024  8:40 PM
  Number of letters in database: 274
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40