Comparative Genomics

ACIAD1189 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d99bf0a99413ed0f2f80f49e7215551f.TrEMBL.fasta
           18 sequences; 4,490 total letters



Query= ACIAD1189

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FCZ3 Pseudouridine synthase [Acinetobacter baylyi (strain ATCC ...  540     0.0   
A0A7G2SDB7 Pseudouridine synthase [Acinetobacter sp]                  540     0.0   
N9BT54 Pseudouridine synthase [Acinetobacter soli NIPH 2899]          491     0.0   
A0A0M1I5W4 Pseudouridine synthase [Acinetobacter sp. C15]             489     0.0   
A0A1P8EIA9 Pseudouridine synthase [Acinetobacter soli]                489     0.0   
A0A3A8EJN8 Pseudouridine synthase [Acinetobacter guerrae]             489     0.0   
A0A009YMX9 Pseudouridine synthase [Acinetobacter sp. 479375]          489     0.0   
A0A5P1UU48 Pseudouridine synthase [Acinetobacter sp. C16S1]           489     0.0   
A0A3G9FXT6 Pseudouridine synthase [Acinetobacter ursingii]            488     1e-180
A0A427PUZ1 Pseudouridine synthase [Acinetobacter sp. FDAARGOS_515]    488     1e-180
A0A3D2SKW9 Pseudouridine synthase [Acinetobacter ursingii]            487     3e-180
N9DCM7 Pseudouridine synthase [Acinetobacter ursingii ANC 3649]       481     4e-178
Q9RCT0 Pseudouridine synthase [Synechococcus leopoliensis]            150     1e-48 
B4YQR3 Pseudouridine synthase [Serratia symbiotica]                   74.7    5e-19 
Q8GMB3 Pseudouridine synthase [Azotobacter vinelandii]                64.7    2e-16 
Q8RIU2 Pseudouridine synthase [Flavobacterium johnsoniae]             67.0    3e-16 
Q5MXK8 Pseudouridine synthase [Agrobacterium vitis]                   65.1    7e-16 
Q8L1E2 Ribosomal small chain pseudouridine synthase A [Vibrio ang...  47.0    2e-10 


>Q6FCZ3 Pseudouridine synthase [Acinetobacter baylyi (strain ATCC 
33305 / BD413 / ADP1)]
Length=264

 Score = 540 bits (1390),  Expect = 0.0
 Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI
Sbjct  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE
Sbjct  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
            DEKPRRKTNGTTRPNTKSRGRRAR
Sbjct  241  DEKPRRKTNGTTRPNTKSRGRRAR  264


>A0A7G2SDB7 Pseudouridine synthase [Acinetobacter sp]
Length=264

 Score = 540 bits (1390),  Expect = 0.0
 Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI
Sbjct  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE
Sbjct  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
            DEKPRRKTNGTTRPNTKSRGRRAR
Sbjct  241  DEKPRRKTNGTTRPNTKSRGRRAR  264


>N9BT54 Pseudouridine synthase [Acinetobacter soli NIPH 2899]
Length=264

 Score = 491 bits (1263),  Expect = 0.0
 Identities = 237/264 (90%), Positives = 251/264 (95%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDS H TVSSFI DP+LRIAGRLDLDSEGLMFLTDHGGLNQYI
Sbjct  1    MKIVVFNKPYDVLSQFREDSKHPTVSSFINDPDLRIAGRLDLDSEGLMFLTDHGGLNQYI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THP+NKKYKTYLVQVDGDITE+ALE+LRKGVELADG+TLPA+A KV EPEWLWER+PPVR
Sbjct  61   THPNNKKYKTYLVQVDGDITEEALEQLRKGVELADGMTLPAKAIKVSEPEWLWERHPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RASIPTSWVEI ICEGRNRQVRRMT+TVGFPTLRLIRT+IGSI+L +LGLQPGEQKEIE
Sbjct  121  YRASIPTSWVEIQICEGRNRQVRRMTSTVGFPTLRLIRTKIGSIDLERLGLQPGEQKEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKP+RSRSYVKKPGGTGGKP+H KNKDGDKK   KKKSGT RIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPFRSRSYVKKPGGTGGKPLHQKNKDGDKKDPAKKKSGTTRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
             EKPRRKTNGTTRPNTKSRGRRAR
Sbjct  241  SEKPRRKTNGTTRPNTKSRGRRAR  264


>A0A0M1I5W4 Pseudouridine synthase [Acinetobacter sp. C15]
Length=264

 Score = 489 bits (1259),  Expect = 0.0
 Identities = 236/264 (89%), Positives = 251/264 (95%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDS H TVSSFI DP+LRIAGRLDLDSEGLMFLTDHGGLNQYI
Sbjct  1    MKIVVFNKPYDVLSQFREDSKHPTVSSFINDPDLRIAGRLDLDSEGLMFLTDHGGLNQYI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THP+NKKYKTYLVQVDGDITE+ALE+LRKGVELADG+TLPA+A KV EPEWLWER+PPVR
Sbjct  61   THPNNKKYKTYLVQVDGDITEEALEQLRKGVELADGMTLPAKAIKVSEPEWLWERHPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RASIPTSWVEI ICEGRNRQVRRMT+TVGFPTLRLIRT+IGSI+L +LGLQPGEQKEIE
Sbjct  121  YRASIPTSWVEIQICEGRNRQVRRMTSTVGFPTLRLIRTKIGSIDLERLGLQPGEQKEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKP+RSRSYVKKPGGTGGKP+H KNK+GDKK   KKKSGT RIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPFRSRSYVKKPGGTGGKPLHQKNKEGDKKDPAKKKSGTTRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
             EKPRRKTNGTTRPNTKSRGRRAR
Sbjct  241  SEKPRRKTNGTTRPNTKSRGRRAR  264


>A0A1P8EIA9 Pseudouridine synthase [Acinetobacter soli]
Length=264

 Score = 489 bits (1259),  Expect = 0.0
 Identities = 236/264 (89%), Positives = 251/264 (95%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDS H TVSSFI DP+LRIAGRLDLDSEGLMFLTDHGGLNQYI
Sbjct  1    MKIVVFNKPYDVLSQFREDSKHPTVSSFINDPDLRIAGRLDLDSEGLMFLTDHGGLNQYI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THP+NKKYKTYLVQVDGDITE+ALE+LRKGVELADG+TLPA+A KV EPEWLWER+PPVR
Sbjct  61   THPNNKKYKTYLVQVDGDITEEALEQLRKGVELADGMTLPAKAIKVSEPEWLWERHPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RASIPTSWVEI ICEGRNRQVRRMT+TVGFPTLRLIRT+IGSI+L +LGLQPGEQKEIE
Sbjct  121  YRASIPTSWVEIQICEGRNRQVRRMTSTVGFPTLRLIRTKIGSIDLERLGLQPGEQKEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKP+RSRSYVKKPGGTGGKP+H KNK+GDKK   KKKSGT RIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPFRSRSYVKKPGGTGGKPLHQKNKEGDKKDPAKKKSGTTRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
             EKPRRKTNGTTRPNTKSRGRRAR
Sbjct  241  SEKPRRKTNGTTRPNTKSRGRRAR  264


>A0A3A8EJN8 Pseudouridine synthase [Acinetobacter guerrae]
Length=267

 Score = 489 bits (1258),  Expect = 0.0
 Identities = 237/262 (90%), Positives = 252/262 (96%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKP+DVLSQFREDSAHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPFDVLSQFREDSAHLTVSSFINDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITEDAL++LRKGVELADGLTLPA A KV EP+WLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEDALQQLRKGVELADGLTLPATAIKVSEPDWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RA+IPTSWVE+SICEGRNRQVRRMTATVGFPTLRLIRT+IGSI+LV+LGLQPGEQ EIE
Sbjct  121  YRANIPTSWVEVSICEGRNRQVRRMTATVGFPTLRLIRTKIGSIDLVRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKP+ HKNK+GDKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPMQHKNKEGDKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
             EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  SEKPRRKTNGTTRPNTKAPRGR  262


>A0A009YMX9 Pseudouridine synthase [Acinetobacter sp. 479375]
Length=267

 Score = 489 bits (1258),  Expect = 0.0
 Identities = 238/262 (91%), Positives = 252/262 (96%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDSAHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIHDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITE+AL++LRKGVELADGLTLPA A KV EP+WLWER PPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEEALQQLRKGVELADGLTLPATAIKVSEPDWLWERTPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRA+IPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRT+IGSI+LV+LGLQPGEQ EIE
Sbjct  121  FRANIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTKIGSIDLVRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKP+HHK+KD DKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPMHHKHKDADKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
            +EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  NEKPRRKTNGTTRPNTKAPRGR  262


>A0A5P1UU48 Pseudouridine synthase [Acinetobacter sp. C16S1]
Length=264

 Score = 489 bits (1258),  Expect = 0.0
 Identities = 231/264 (88%), Positives = 251/264 (95%), Gaps = 0/264 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFRED AHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDEAHLTVSSFIKDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYL QVDGD+TE+ALE+LR GVELADG+TLPA+A KV+EPEWLW+R+PPVR
Sbjct  61   THPSNKKYKTYLAQVDGDVTEEALEQLRNGVELADGMTLPAKAMKVDEPEWLWDRDPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RASIPTSW+E+ ICEGRNRQVRRMTA VGFPTLRLIRTQIGSINL++LGLQPGEQ EIE
Sbjct  121  YRASIPTSWIELQICEGRNRQVRRMTAAVGFPTLRLIRTQIGSINLIRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLL+PDFKD+PEDKPYRSRSYVKKPGGTGGKP+H K K+GDKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLFPDFKDLPEDKPYRSRSYVKKPGGTGGKPMHQKKKEGDKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKSRGRRAR  264
             EKPRRKTNGTTRPNTKSRGR+AR
Sbjct  241  SEKPRRKTNGTTRPNTKSRGRKAR  264


>A0A3G9FXT6 Pseudouridine synthase [Acinetobacter ursingii]
Length=267

 Score = 488 bits (1256),  Expect = 1e-180
 Identities = 238/262 (91%), Positives = 252/262 (96%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFREDSAHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIHDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITE+AL++LRKGVELADGLTLPA A KV EP+WLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEEALQQLRKGVELADGLTLPATAIKVSEPDWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRA+IPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRT+IGSI+LV+LGLQPGEQ EIE
Sbjct  121  FRANIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTKIGSIDLVRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKP+ HK+KD DKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPMQHKHKDADKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
            +EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  NEKPRRKTNGTTRPNTKAPRGR  262


>A0A427PUZ1 Pseudouridine synthase [Acinetobacter sp. FDAARGOS_515]
Length=267

 Score = 488 bits (1255),  Expect = 1e-180
 Identities = 237/262 (90%), Positives = 253/262 (97%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFRED+AHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDTAHLTVSSFIHDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITE+AL++LRKGVELADGLTLPA A KV EP+WLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEEALQQLRKGVELADGLTLPATAIKVSEPDWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRA+IPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRT+IGSI+LV+LGLQPGEQ EIE
Sbjct  121  FRANIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTKIGSIDLVRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKP+ HK+K+GDKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPMQHKHKEGDKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
            +EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  NEKPRRKTNGTTRPNTKAPRGR  262


>A0A3D2SKW9 Pseudouridine synthase [Acinetobacter ursingii]
Length=267

 Score = 487 bits (1253),  Expect = 3e-180
 Identities = 237/262 (90%), Positives = 252/262 (96%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFRED+AHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDTAHLTVSSFIHDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITE+AL++LRKGVELADGLTLPA A KV EP+WLWERNPPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEEALQQLRKGVELADGLTLPATAIKVSEPDWLWERNPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            FRA+IPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRT+IGSI+LV+LGLQPGEQ EIE
Sbjct  121  FRANIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTKIGSIDLVRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKP+ HK+KD DKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPMQHKHKDADKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
            +EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  NEKPRRKTNGTTRPNTKAPRGR  262


>N9DCM7 Pseudouridine synthase [Acinetobacter ursingii ANC 3649]
Length=267

 Score = 481 bits (1239),  Expect = 4e-178
 Identities = 231/262 (88%), Positives = 250/262 (95%), Gaps = 1/262 (0%)

Query  1    MKIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYI  60
            MKIVVFNKPYDVLSQFRED+AHLTVSSFI DPELRIAGRLDLDSEGLMFLTDHGGLNQ+I
Sbjct  1    MKIVVFNKPYDVLSQFREDTAHLTVSSFIHDPELRIAGRLDLDSEGLMFLTDHGGLNQFI  60

Query  61   THPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVR  120
            THPSNKKYKTYLVQVDGDITE+AL++LRKGVELADGLTLPA A KV+EPEWLW+R+PPVR
Sbjct  61   THPSNKKYKTYLVQVDGDITEEALQQLRKGVELADGLTLPATAMKVDEPEWLWDRDPPVR  120

Query  121  FRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEIE  180
            +RASIPTSW+E+ ICEGRNRQVRRMTA VGFPTLRLIRTQIGSINL++LGLQPGEQ EIE
Sbjct  121  YRASIPTSWIELQICEGRNRQVRRMTAAVGFPTLRLIRTQIGSINLIRLGLQPGEQTEIE  180

Query  181  PLLYPDFKDVPEDKPYRSRSYVKKPGGTGGKPIHHKNKDGDKKASDKKKSGTKRIWQMDE  240
            PLL+PDFKD+PEDKPYRSRSYVKKPGGTGGKP+H K K+GDKK  +KKKSGTKRIWQMDE
Sbjct  181  PLLFPDFKDLPEDKPYRSRSYVKKPGGTGGKPMHQKKKEGDKKDPNKKKSGTKRIWQMDE  240

Query  241  DEKPRRKTNGTTRPNTKS-RGR  261
             EKPRRKTNGTTRPNTK+ RGR
Sbjct  241  SEKPRRKTNGTTRPNTKAPRGR  262


>Q9RCT0 Pseudouridine synthase [Synechococcus leopoliensis]
Length=199

 Score = 150 bits (379),  Expect = 1e-48
 Identities = 81/184 (44%), Positives = 120/184 (65%), Gaps = 7/184 (4%)

Query  2    KIVVFNKPYDVLSQFREDSA--HLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQY  59
            + ++F+KPYD + QF         T+  +I  PE+   GRLD DSEGL+ LT++G L   
Sbjct  4    RYLLFHKPYDAVCQFSPSDRPDQQTLKDYIDVPEVYPVGRLDRDSEGLLLLTNNGALQHR  63

Query  60   ITHPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPV  119
            + HP     +TY VQV+ + TE AL+ LR+GV++ D  T PA+  ++++P+ + ER+PP+
Sbjct  64   LCHPRFGHDRTYWVQVEREPTEAALQALRQGVQIQDYRTRPAKVQRLDDPQ-IPERDPPI  122

Query  120  RFRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGS----INLVKLGLQPGE  175
            RFR ++PT+W+ +++ EGRNRQVRRMTA VG PTLRLIR  I +      L   GL PG 
Sbjct  123  RFRKTVPTAWLALTLQEGRNRQVRRMTAAVGHPTLRLIRAAIATHPDQPPLQLQGLAPGT  182

Query  176  QKEI  179
             +++
Sbjct  183  WRDL  186


>B4YQR3 Pseudouridine synthase [Serratia symbiotica]
Length=300

 Score = 74.7 bits (182),  Expect = 5e-19
 Identities = 59/193 (31%), Positives = 88/193 (46%), Gaps = 38/193 (20%)

Query  2    KIVVFNKPYDVLSQFREDS---AHLTVSSFIADPELR-----IAGRLDLDSEGLMFLTDH  53
            +++ + KP   L      S     LTV   +  P+LR       GRLD+++ GL+  T +
Sbjct  68   RVLAYYKPEGELCTISNPSNPEGRLTVFDHL--PKLRNLRWVSVGRLDINTSGLLLFTTN  125

Query  54   GGLNQYITHPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLW  113
            G L   + HPS K  + Y V+V G  + + ++KL+  +EL DG                 
Sbjct  126  GELANRLMHPSRKIEREYAVRVFGKPSAENIKKLKHNIELEDG-----------------  168

Query  114  ERNPPVRFRASI------PTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLV  167
                P  FR            W  +++ EGRNR+VRR+   VG    RLIR + G+I L 
Sbjct  169  ----PAFFRTITFQGGKGLNQWYHVTLTEGRNREVRRLWEAVGIQVSRLIRIRYGNIVLP  224

Query  168  KLGLQPGEQKEIE  180
            K GL  G   E++
Sbjct  225  K-GLPRGSWAELD  236


>Q8GMB3 Pseudouridine synthase [Azotobacter vinelandii]
Length=152

 Score = 64.7 bits (156),  Expect = 2e-16
 Identities = 52/163 (32%), Positives = 77/163 (47%), Gaps = 25/163 (15%)

Query  22   HLTVSSFIADPE---LRIAGRLDLDSEGLMFLTDHGGLNQYITHPSNKKYKTYLVQVDGD  78
            H TV   + +P+   L +AGRLDL + GL+ LT+ G  ++ ITHP  K  K Y V+    
Sbjct  2    HRTVLDLLDEPDRQGLHLAGRLDLGTTGLLLLTNDGHWSRRITHPRYKLAKVYYVETAEP  61

Query  79   ITEDALEKLRKGVELA--DGLTLPAQATKVEEPEWLWERNPPVRFRASIPTSWVEISICE  136
            I E+ +E   +G+  A  D +T PA        E L   +               +++ E
Sbjct  62   IGEEYIETFARGLYFAFEDLVTQPAHL------ELLGSHS-------------ARLTLFE  102

Query  137  GRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEI  179
            GR  QV+RM      P LRL R  +G + L +  L PG  + +
Sbjct  103  GRYHQVKRMFGYFRNPVLRLHRESMGPLRL-ESELPPGHYRPL  144


>Q8RIU2 Pseudouridine synthase [Flavobacterium johnsoniae]
Length=304

 Score = 67.0 bits (162),  Expect = 3e-16
 Identities = 60/195 (31%), Positives = 92/195 (47%), Gaps = 34/195 (17%)

Query  4    VVFNKPYDVLSQFREDSAHLTVSSFIAD-----PELRIAGRLDLDSEGLMFLTDHGGLNQ  58
            + FNKP  +     E + +L V + I D       +   GRLD  SEGL+F+T+ G +  
Sbjct  68   LAFNKPVGI-----ECTTNLEVKNNIVDYINYPKRIFPIGRLDKASEGLIFMTNDGDIVN  122

Query  59   YITHPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPP  118
             I    N   K Y V V+  ITE  ++++  GV + D +T   +  KVE+          
Sbjct  123  KILRARNNHEKEYTVTVNKPITERFIQRMGNGVPILDTVT---KKCKVEQ----------  169

Query  119  VRFRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINL-VKLG----LQP  173
                  I     +I + +G NRQ+RRM+  +G+    L R +I +I+L V +G    L  
Sbjct  170  ------ISKYTFKIILTQGLNRQIRRMSEYLGYEVTALKRIRIINISLDVPVGRYRDLTD  223

Query  174  GEQKEIEPLLYPDFK  188
             E KE+  L+ P  K
Sbjct  224  AEIKELNKLIEPSSK  238


>Q5MXK8 Pseudouridine synthase [Agrobacterium vitis]
Length=240

 Score = 65.1 bits (157),  Expect = 7e-16
 Identities = 43/167 (26%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query  2    KIVVFNKPYDVLSQFREDSAHLTVSSFIAD--PELRIAGRLDLDSEGLMFLTDHGGLNQY  59
            ++ +++KP  +++   +     TV   + +  P +   GRLD+++EGL+ LT+ GGL + 
Sbjct  41   RLWLYHKPSGLVTTNSDPEGRPTVFDNLPEELPRVMSIGRLDINTEGLLLLTNDGGLARV  100

Query  60   ITHPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPV  119
            +  P+    + Y V+  G+I +  L+ L+ G+ + DG+              L+     V
Sbjct  101  LELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAV-DGV--------------LYGAIDAV  145

Query  120  RFRASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINL  166
              RA     W+ + + EG+NR+++ +   +G    RLIR   G   L
Sbjct  146  LDRAQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQL  192


>Q8L1E2 Ribosomal small chain pseudouridine synthase A [Vibrio 
anguillarum]
Length=109

 Score = 47.0 bits (110),  Expect = 2e-10
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 0/60 (0%)

Query  33   ELRIAGRLDLDSEGLMFLTDHGGLNQYITHPSNKKYKTYLVQVDGDITEDALEKLRKGVE  92
            +L  AGRLD+D+ GL+ +TD G  +  IT P +K  KTY V +   I  + +E+   G+E
Sbjct  50   DLHFAGRLDVDTTGLVLITDDGQWSHRITSPKHKCDKTYRVWLADPIEANYVEQFLTGIE  109



Lambda      K        H        a         alpha
   0.317    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 817258


  Database: d99bf0a99413ed0f2f80f49e7215551f.TrEMBL.fasta
    Posted date:  Jun 3, 2024  3:28 AM
  Number of letters in database: 4,490
  Number of sequences in database:  18



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40