BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d4d513dea7e3c8814490abc3d458ca30.SwissProt.fasta
4 sequences; 846 total letters
Query= ACIAD1199
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
P0A916 Outer membrane protein W [Shigella flexneri] 82.8 3e-23
P0A915 Outer membrane protein W [Escherichia coli (strain K12)] 82.8 3e-23
P0A145 Dibenzothiophene metabolism operon protein PahQ [Pseudomon... 61.6 1e-15
P0A146 Dibenzothiophene metabolism operon protein DoxH [Pseudomon... 61.6 1e-15
>P0A916 Outer membrane protein W [Shigella flexneri]
Length=212
Score = 82.8 bits (203), Expect = 3e-23
Identities = 69/251 (27%), Positives = 100/251 (40%), Gaps = 41/251 (16%)
Query 6 MKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIPYFNTF 65
MKKLT A L + L++ A + F + AG A + P G T
Sbjct 1 MKKLTVAALAVTTLLSG---SAFAHEAGEFFMRAGSATVRPTEGAGG-----------TL 46
Query 66 NSAAGFELDNADTAEFKLDYLVNDNVTVGLILGVP--PKVDIQGKGQLLAGALNLDSFSK 123
S GF + N Y+ DN+ V L+ P K+ + G
Sbjct 47 GSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGD------------- 93
Query 124 VGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASFRDFKLNPEVNAKIAPLGGTISNV 183
+ V P L ++ FG ++KFRPYVGAG Y +F D N + K A L S++
Sbjct 94 IATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFND--HGKEAGL----SDL 147
Query 184 DIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIEINP 243
+ D+ +G DY I +W SV Y+ + T AN + Q + ++P
Sbjct 148 SLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGG------AQQHDSVRLDP 201
Query 244 IVTYLGVGYRF 254
V GYRF
Sbjct 202 WVFMFSAGYRF 212
>P0A915 Outer membrane protein W [Escherichia coli (strain K12)]
Length=212
Score = 82.8 bits (203), Expect = 3e-23
Identities = 69/251 (27%), Positives = 100/251 (40%), Gaps = 41/251 (16%)
Query 6 MKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIPYFNTF 65
MKKLT A L + L++ A + F + AG A + P G T
Sbjct 1 MKKLTVAALAVTTLLSG---SAFAHEAGEFFMRAGSATVRPTEGAGG-----------TL 46
Query 66 NSAAGFELDNADTAEFKLDYLVNDNVTVGLILGVP--PKVDIQGKGQLLAGALNLDSFSK 123
S GF + N Y+ DN+ V L+ P K+ + G
Sbjct 47 GSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGD------------- 93
Query 124 VGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASFRDFKLNPEVNAKIAPLGGTISNV 183
+ V P L ++ FG ++KFRPYVGAG Y +F D N + K A L S++
Sbjct 94 IATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFND--HGKEAGL----SDL 147
Query 184 DIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIEINP 243
+ D+ +G DY I +W SV Y+ + T AN + Q + ++P
Sbjct 148 SLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGG------AQQHDSVRLDP 201
Query 244 IVTYLGVGYRF 254
V GYRF
Sbjct 202 WVFMFSAGYRF 212
>P0A145 Dibenzothiophene metabolism operon protein PahQ [Pseudomonas
aeruginosa]
Length=211
Score = 61.6 bits (148), Expect = 1e-15
Identities = 49/222 (22%), Positives = 91/222 (41%), Gaps = 32/222 (14%)
Query 38 SAGWAHIMPQGTKQGVNSTS---SIPYFNTFNSAAGFELDNADTAEFKLD--YLVNDNVT 92
S WA P + G+ + + S + G D +D D Y +ND
Sbjct 17 SPTWAEESPWTYRIGMTNVAFDASAKVYLNGQRVPGGSADASDNNALTFDFGYAINDQWN 76
Query 93 VGLILGVPPKVDIQGKGQLLAGALNLDSFSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVG 152
V I+G+PP + G G L ++G + VLT Y ++ RP++G
Sbjct 77 VRAIVGIPPTTKVTGAGTLPG--------IQLGKITYAPTVLTLNYNLPALG-PVRPHIG 127
Query 153 AGFMYASFRDFKLNPEVNAKIAPLGGTISNVDIDDAVAPVAFIGADYNITPNWFATASVS 212
AG Y + + + + D D A +P +GAD ++ WF + +
Sbjct 128 AGVNYTRIFESR------------DANLKSFDADHAWSPALHVGADIDVNRGWFVSIDIR 175
Query 213 YVHLSTHANLNVVNPANVTFVQGSSKIEINPIVTYLGVGYRF 254
++L T A+ + P + +++ ++P++T + +G +F
Sbjct 176 KLYLKTDAS-GYLGPQ-----EAKARVTLDPLLTSIAIGRQF 211
>P0A146 Dibenzothiophene metabolism operon protein DoxH [Pseudomonas
sp. (strain C18)]
Length=211
Score = 61.6 bits (148), Expect = 1e-15
Identities = 49/222 (22%), Positives = 91/222 (41%), Gaps = 32/222 (14%)
Query 38 SAGWAHIMPQGTKQGVNSTS---SIPYFNTFNSAAGFELDNADTAEFKLD--YLVNDNVT 92
S WA P + G+ + + S + G D +D D Y +ND
Sbjct 17 SPTWAEESPWTYRIGMTNVAFDASAKVYLNGQRVPGGSADASDNNALTFDFGYAINDQWN 76
Query 93 VGLILGVPPKVDIQGKGQLLAGALNLDSFSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVG 152
V I+G+PP + G G L ++G + VLT Y ++ RP++G
Sbjct 77 VRAIVGIPPTTKVTGAGTLPG--------IQLGKITYAPTVLTLNYNLPALG-PVRPHIG 127
Query 153 AGFMYASFRDFKLNPEVNAKIAPLGGTISNVDIDDAVAPVAFIGADYNITPNWFATASVS 212
AG Y + + + + D D A +P +GAD ++ WF + +
Sbjct 128 AGVNYTRIFESR------------DANLKSFDADHAWSPALHVGADIDVNRGWFVSIDIR 175
Query 213 YVHLSTHANLNVVNPANVTFVQGSSKIEINPIVTYLGVGYRF 254
++L T A+ + P + +++ ++P++T + +G +F
Sbjct 176 KLYLKTDAS-GYLGPQ-----EAKARVTLDPLLTSIAIGRQF 211
Lambda K H a alpha
0.320 0.137 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 160114
Database: d4d513dea7e3c8814490abc3d458ca30.SwissProt.fasta
Posted date: Jun 1, 2024 5:30 AM
Number of letters in database: 846
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
