BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d72788dfca2dffaaeb84dc6f94c9048e.SwissProt.fasta
14 sequences; 5,471 total letters
Query= ACIAD1225
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
P0AEB3 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli... 303 6e-104
P0AEB4 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli... 303 6e-104
P0AEB2 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli... 303 6e-104
P44466 D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus infl... 301 3e-103
P08506 D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli... 294 2e-100
P38422 D-alanyl-D-alanine carboxypeptidase DacF [Bacillus subtili... 258 1e-86
P33013 D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli... 258 2e-86
P37604 D-alanyl-D-alanine carboxypeptidase DacD [Salmonella typhi... 256 8e-86
P08750 D-alanyl-D-alanine carboxypeptidase DacA [Bacillus subtili... 159 5e-48
Q05523 D-alanyl-D-alanine carboxypeptidase DacA [Geobacillus stea... 158 2e-47
P35150 D-alanyl-D-alanine carboxypeptidase DacB [Bacillus subtili... 108 7e-30
P72161 D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa (... 84.0 2e-21
P0AFI5 D-alanyl-D-alanine endopeptidase [Escherichia coli (strain... 81.3 2e-20
O53380 D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium t... 81.3 3e-20
>P0AEB3 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=403
Score = 303 bits (777), Expect = 6e-104
Identities = 157/367 (43%), Positives = 230/367 (63%), Gaps = 5/367 (1%)
Query 21 TVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEG 80
T++ P+++ +SY+L+DY +G++LA +N + PAS+TKMMTSY+I Q + G+ E
Sbjct 36 TMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKET 95
Query 81 EQVRMNESAWCRGS---SSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNE 137
+ V + AW G+ S M++ V +++RGI +QSGNDA AMA+ AG++
Sbjct 96 DLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQ 155
Query 138 GTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEK 197
F +MN LG+ NTHF GL A+G YSSA+DMA++ Q +I+D Y IY EK
Sbjct 156 DAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEK 215
Query 198 EFTFNGIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVN 256
EFTFNGI+Q NRN LL+ + +VDG+KTGHT +AGY L S+ G MRLIS + G +
Sbjct 216 EFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFK 275
Query 257 ERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVTMPKGQAD 316
R +++ LL WGF FETVN + A VWFG + +G+ ++ +T+P+G+
Sbjct 276 GREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMK 335
Query 317 KIKTQLVV-QPKLNAPLQKGQVVGKLVATLDGKVIAEKPLVALKPVEEASFFARMIDHIK 375
+K V+ +L+APLQK QVVG + LDGK I ++PLV L+ + E +FF ++ID+IK
Sbjct 336 DLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIK 395
Query 376 QFFSNLF 382
F + F
Sbjct 396 LMFHHWF 402
>P0AEB4 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia
coli O157:H7]
Length=403
Score = 303 bits (777), Expect = 6e-104
Identities = 157/367 (43%), Positives = 230/367 (63%), Gaps = 5/367 (1%)
Query 21 TVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEG 80
T++ P+++ +SY+L+DY +G++LA +N + PAS+TKMMTSY+I Q + G+ E
Sbjct 36 TMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKET 95
Query 81 EQVRMNESAWCRGS---SSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNE 137
+ V + AW G+ S M++ V +++RGI +QSGNDA AMA+ AG++
Sbjct 96 DLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQ 155
Query 138 GTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEK 197
F +MN LG+ NTHF GL A+G YSSA+DMA++ Q +I+D Y IY EK
Sbjct 156 DAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEK 215
Query 198 EFTFNGIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVN 256
EFTFNGI+Q NRN LL+ + +VDG+KTGHT +AGY L S+ G MRLIS + G +
Sbjct 216 EFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFK 275
Query 257 ERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVTMPKGQAD 316
R +++ LL WGF FETVN + A VWFG + +G+ ++ +T+P+G+
Sbjct 276 GREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMK 335
Query 317 KIKTQLVV-QPKLNAPLQKGQVVGKLVATLDGKVIAEKPLVALKPVEEASFFARMIDHIK 375
+K V+ +L+APLQK QVVG + LDGK I ++PLV L+ + E +FF ++ID+IK
Sbjct 336 DLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIK 395
Query 376 QFFSNLF 382
F + F
Sbjct 396 LMFHHWF 402
>P0AEB2 D-alanyl-D-alanine carboxypeptidase DacA [Escherichia
coli (strain K12)]
Length=403
Score = 303 bits (777), Expect = 6e-104
Identities = 157/367 (43%), Positives = 230/367 (63%), Gaps = 5/367 (1%)
Query 21 TVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEG 80
T++ P+++ +SY+L+DY +G++LA +N + PAS+TKMMTSY+I Q + G+ E
Sbjct 36 TMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKET 95
Query 81 EQVRMNESAWCRGS---SSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNE 137
+ V + AW G+ S M++ V +++RGI +QSGNDA AMA+ AG++
Sbjct 96 DLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQ 155
Query 138 GTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEK 197
F +MN LG+ NTHF GL A+G YSSA+DMA++ Q +I+D Y IY EK
Sbjct 156 DAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEK 215
Query 198 EFTFNGIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVN 256
EFTFNGI+Q NRN LL+ + +VDG+KTGHT +AGY L S+ G MRLIS + G +
Sbjct 216 EFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFK 275
Query 257 ERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVTMPKGQAD 316
R +++ LL WGF FETVN + A VWFG + +G+ ++ +T+P+G+
Sbjct 276 GREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMK 335
Query 317 KIKTQLVV-QPKLNAPLQKGQVVGKLVATLDGKVIAEKPLVALKPVEEASFFARMIDHIK 375
+K V+ +L+APLQK QVVG + LDGK I ++PLV L+ + E +FF ++ID+IK
Sbjct 336 DLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIK 395
Query 376 QFFSNLF 382
F + F
Sbjct 396 LMFHHWF 402
>P44466 D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=393
Score = 301 bits (771), Expect = 3e-103
Identities = 164/382 (43%), Positives = 238/382 (62%), Gaps = 6/382 (2%)
Query 7 LAALVLLPTFSYAATVL---TTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMM 63
L++ V L FS +A + TPP++ ++YVLMDY +G IL + N ++ PAS+TKMM
Sbjct 11 LSSFVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMM 70
Query 64 TSYIIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGN 123
TSY++ L +G++ + V + ESAW R S M++ LN +V ++ RG+IV SGN
Sbjct 71 TSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGN 130
Query 124 DASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHI 183
DA+ A+AEH++GN F MN+ ++ G+ NT+F GL YSSA+DMAI+ HI
Sbjct 131 DATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHI 190
Query 184 IKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTS-SKRG 241
I+D + Y IYSEK FTFN IKQ NRN LL+ +VDG+KTGHTS+AGY L S +
Sbjct 191 IRDLPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSN 250
Query 242 PMRLISVIFGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIG 301
MRLISV+ G + R +++ LL WGF+NFET A + +++ +V++G +N V++G
Sbjct 251 NMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLG 310
Query 302 LAENFNVTMPKGQADKIKTQLVVQPK-LNAPLQKGQVVGKLVATLDGKVIAEKPLVALKP 360
+ +T+PKG+ ++K + + K L APL KGQV+GK+V LDGK IA L +
Sbjct 311 ALMDHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGKVVYQLDGKDIASANLQVMND 370
Query 361 VEEASFFARMIDHIKQFFSNLF 382
V EA F ++ D + LF
Sbjct 371 VGEAGIFGKLWDWLVLTVKGLF 392
>P08506 D-alanyl-D-alanine carboxypeptidase DacC [Escherichia
coli (strain K12)]
Length=400
Score = 294 bits (753), Expect = 2e-100
Identities = 157/385 (41%), Positives = 242/385 (63%), Gaps = 5/385 (1%)
Query 3 LKSALAALVLLPTFSYAATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKM 62
L + A L L ++AA P ++ ++++LMDY +G++LA N +E L PAS+TK+
Sbjct 11 LAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKI 70
Query 63 MTSYIIEQKLLKGELTEGEQVRMNESAWCRGSSS---ESCMYVPLNGTATVLEMLRGIIV 119
MTSY++ Q L ++ + V + + AW G+ + S M++ +V ++ +G+I+
Sbjct 71 MTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVII 130
Query 120 QSGNDASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAIL 179
QSGNDA A+A++VAG++ +F +MN AK+LG+ NT F GL A G +S+A+DMA+L
Sbjct 131 QSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALL 190
Query 180 AQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLY-TDPSVDGLKTGHTSEAGYCLTTSS 238
+ +I D + Y I+ EKEFTFN I+Q NRN LL+ ++ +VDG+KTG T+ AGY L S+
Sbjct 191 GKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASA 250
Query 239 KRGPMRLISVIFGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEV 298
+G MRLISV+ G + R N++ LL WGF FETV + +VWFG ++EV
Sbjct 251 TQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEV 310
Query 299 QIGLAENFNVTMPKGQADKIK-TQLVVQPKLNAPLQKGQVVGKLVATLDGKVIAEKPLVA 357
+G E +VT+P+GQ +K + + +P+L APL+KGQVVG + L+GK I ++PL+
Sbjct 311 NLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIV 370
Query 358 LKPVEEASFFARMIDHIKQFFSNLF 382
++ VEE FF R+ D + F F
Sbjct 371 MENVEEGGFFGRVWDFVMMKFHQWF 395
>P38422 D-alanyl-D-alanine carboxypeptidase DacF [Bacillus subtilis
(strain 168)]
Length=389
Score = 258 bits (660), Expect = 1e-86
Identities = 146/340 (43%), Positives = 217/340 (64%), Gaps = 8/340 (2%)
Query 32 KSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEGEQVRMNESAWC 91
KS VL++ +TG++L +KN NE LAPASMTK+MT +I + L KG++ ++VR +E A
Sbjct 38 KSAVLIERDTGKVLYNKNSNERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAAS 97
Query 92 RGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRL 151
G S +++ TV EML+GI + SGNDAS AMAE ++G+E F MN++AK L
Sbjct 98 MGGSQ---IFLEPGEEMTVKEMLKGIAIASGNDASVAMAEFISGSEEEFVKKMNKKAKEL 154
Query 152 GMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSS--KYYPIYSE--KEFTFNGIKQG 207
G+ NT F N TGL EGHYSSA DMAI+A+ ++K S K+ Y + +E T
Sbjct 155 GLKNTSFKNPTGLTEEGHYSSAYDMAIMAKELLKYESITKFTGTYEDYLRENTDKKFWLV 214
Query 208 NRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVNERANQTRTLLA 267
N N L+ P VDG+KTG+T EA YCLT S+K+G MR I+V+FG ++ ER Q +L
Sbjct 215 NTNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKERNAQVTKMLD 274
Query 268 WGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVTMPKGQ-ADKIKTQLVVQP 326
+ FS +ET + NQ +AK KV GK+ +++ +E ++ KG+ + +K ++ ++
Sbjct 275 FAFSQYETHPLYKRNQTVAKVKVKKGKQKFIELTTSEPISILTKKGEDMNDVKKEIKMKD 334
Query 327 KLNAPLQKGQVVGKLVATLDGKVIAEKPLVALKPVEEASF 366
++AP+QKGQ +G LV DG+V+AE P+ A + +++A F
Sbjct 335 NISAPIQKGQELGTLVLKKDGEVLAESPVAAKEDMKKAGF 374
>P33013 D-alanyl-D-alanine carboxypeptidase DacD [Escherichia
coli (strain K12)]
Length=388
Score = 258 bits (659), Expect = 2e-86
Identities = 138/353 (39%), Positives = 210/353 (59%), Gaps = 5/353 (1%)
Query 26 PPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEGEQVRM 85
PPE++ S+VLMDY TGQIL + NE++ PAS+TK+MT Y++++ + +T + V +
Sbjct 31 PPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTV 90
Query 86 NESAWCRGSS---SESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAH 142
AW + + S M++ +V ++ RG+IV SGNDA A+A+++AG + F
Sbjct 91 GRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVE 150
Query 143 MMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEKEFTFN 202
MMN A++L + +THF GL A G +SSA D+A+L++ II ++Y +YSEK T+N
Sbjct 151 MMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWN 210
Query 203 GIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTSVNERANQ 261
GI Q NRN LL+ +VDGLKTGHTS AG+ L S+ G RLI+V+ G S R +
Sbjct 211 GITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEE 270
Query 262 TRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENFNVTMPKGQADKIKTQ 321
R LL WG NF TV + + + ++W+G + + +G + F + +PK + IK +
Sbjct 271 ARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAK 330
Query 322 LVVQPK-LNAPLQKGQVVGKLVATLDGKVIAEKPLVALKPVEEASFFARMIDH 373
+ K L AP+ Q VG++ K +A PLV L+ V E S F+R+ D+
Sbjct 331 YTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDY 383
>P37604 D-alanyl-D-alanine carboxypeptidase DacD [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=390
Score = 256 bits (655), Expect = 8e-86
Identities = 139/379 (37%), Positives = 224/379 (59%), Gaps = 6/379 (2%)
Query 3 LKSALAALVLLPTFSY-AATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTK 61
+ ++L A+ L P + A + PP ++ ++VLMDY TGQ+L + NE++ PAS+TK
Sbjct 9 IAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPASLTK 68
Query 62 MMTSYIIEQKLLKGELTEGEQVRMNESAWCRGSS---SESCMYVPLNGTATVLEMLRGII 118
+MT Y++++ + ++ + V + AW + + S M++ +V ++ RG+I
Sbjct 69 LMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLI 128
Query 119 VQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAI 178
V SGNDA A+A+++AG + F MMN K+L + +THF GL A G +SSA D+A+
Sbjct 129 VDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAV 188
Query 179 LAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLTTS 237
L++ II ++Y +YSEK T+NGI Q NRN LL+ +DGLKTGHTS AG+ L S
Sbjct 189 LSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFNLIAS 248
Query 238 SKRGPMRLISVIFGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENE 297
+ G RLI+V+ G S R Q R LL WG NF TV + + + + ++W+G + +
Sbjct 249 AVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYGDKEK 308
Query 298 VQIGLAENFNVTMPKGQADKIKTQLVVQPK-LNAPLQKGQVVGKLVATLDGKVIAEKPLV 356
+ +G ++F + +PK + IK + V+ K L AP+ Q VG++ K+IA+ PLV
Sbjct 309 IALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEIELYDRDKLIAQWPLV 368
Query 357 ALKPVEEASFFARMIDHIK 375
L+ V + F+R+ D+ +
Sbjct 369 TLESVGKGGMFSRLSDYFQ 387
>P08750 D-alanyl-D-alanine carboxypeptidase DacA [Bacillus subtilis
(strain 168)]
Length=443
Score = 159 bits (403), Expect = 5e-48
Identities = 132/437 (30%), Positives = 212/437 (49%), Gaps = 60/437 (14%)
Query 1 MTLKSALAALVLLPTFSYAATVL---------TTPPELNNKSYVLMDYETGQILASKNEN 51
M +K L+ L + A T L + P ++N + ++++ +G+IL SKN +
Sbjct 1 MNIKKCKQLLMSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNAD 60
Query 52 EHLAPASMTKMMTSYIIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPL--NGTAT 109
+ L ASMTKMMT Y++ + + +G++ + +Q + S S VPL +G T
Sbjct 61 KRLPIASMTKMMTEYLLLEAIDQGKV-KWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYT 119
Query 110 VLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGL---PA 166
V E+ + + S N A+ A+AE VAG+E F MN +AK LG+ + F+N+TGL
Sbjct 120 VKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDL 179
Query 167 EGHYS-----------SAKDMAILAQHIIKDSSKYYPIYSE---------KEFTFNGIKQ 206
GH SAKDMA+LA H+I D YP E +E T + +
Sbjct 180 HGHQPEGTSVNEESEVSAKDMAVLADHLITD----YPEILETSSIAKTKFREGTDDEMDM 235
Query 207 GNRNALL------YTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIFGTTS--VNER 258
N N +L Y +VDGLKTG T AG C T +++R MR+I+V+ R
Sbjct 236 PNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGR 295
Query 259 ANQTRTLLAWGFSNFETVNV-QPANQVLAKAKVWFGKENEVQIGLAEN--FNVTMPKGQA 315
++T+ + + F NF + +QV + K E ++G+ N F++ + G+
Sbjct 296 FDETKKMFDYAFDNFSMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFSLPVKNGEE 355
Query 316 DKIKTQLVV-QPKLNAPLQKGQVVGKLVATLDG---------KVIAEKPLVALKPVEEAS 365
K ++ + + L AP++KG VGKL A G +A LV + VE+A+
Sbjct 356 KNYKAKVTLNKDNLTAPVKKGTKVGKLTAEYTGDEKDYGFLNSDLAGVDLVTKENVEKAN 415
Query 366 FFARMIDHIKQFFSNLF 382
+F + I FF+ ++
Sbjct 416 WFVLTMRSIGGFFAGIW 432
>Q05523 D-alanyl-D-alanine carboxypeptidase DacA [Geobacillus
stearothermophilus]
Length=452
Score = 158 bits (399), Expect = 2e-47
Identities = 130/420 (31%), Positives = 201/420 (48%), Gaps = 55/420 (13%)
Query 16 FSYAATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKG 75
F + P ++ + +L+D +TG+IL KN + L ASMTKMMT Y++ + K
Sbjct 24 FQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDTVLGIASMTKMMTEYLLLDAI-KA 82
Query 76 ELTEGEQVRMNESAWCRGSSSESCMYVPL--NGTATVLEMLRGIIVQSGNDASKAMAEHV 133
+ + +Q+ R S + VPL +G TV E+ + + S N A+ A+AE +
Sbjct 83 KRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVRELYEAMAIYSANGATVAIAEII 142
Query 134 AGNEGTFAHMMNQEAKRLGMVNTHFMNSTGL--------------PAEGHYSSAKDMAIL 179
AG+E F MMN +AK LG+ + F+N+TGL E + SA+ MA+L
Sbjct 143 AGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKGFHPEGTSTNEENVMSARAMAML 202
Query 180 AQHIIKD-----SSKYYPIYSEKEFTFNGIKQGNRN----ALLYTDPSVDGLKTGHTSEA 230
A ++KD + P +E T + IK N N L+Y VDGLKTG+T A
Sbjct 203 AYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWMLPGLVYGYEGVDGLKTGYTEFA 262
Query 231 GYCLTTSSKRGPMRLISVIF------GTTSVNERANQTRTLLAWGFSNFETVNVQPANQV 284
G C T ++KR +RLISV+ G T+ R +T L +GF+ + + P
Sbjct 263 GNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKETEKLFNYGFNQYSLETLYPKGYQ 322
Query 285 LAKAK----VWFGKENEVQIGLAENFNVTMPKGQADKIKTQLVV-------QPKLNAPLQ 333
L K K V GKE EV++ +N ++ + G+ + K V+ + KL APL+
Sbjct 323 L-KGKETLPVVKGKEKEVRVATGKNLDLLVKNGEEKQYKPVYVLDKKKMTKEGKLVAPLK 381
Query 334 KGQVVGKLVATLDG-----------KVIAEKPLVALKPVEEASFFARMIDHIKQFFSNLF 382
KG+ VG + G + PLV VE+A++F + + F +L+
Sbjct 382 KGETVGYMTLEYKGDDSLAFLSPDMQKNIRVPLVTTAEVEKANWFVLSMRAVGGLFVDLW 441
>P35150 D-alanyl-D-alanine carboxypeptidase DacB [Bacillus subtilis
(strain 168)]
Length=382
Score = 108 bits (271), Expect = 7e-30
Identities = 77/247 (31%), Positives = 133/247 (54%), Gaps = 14/247 (6%)
Query 8 AALVLLPTFSYAATVLTTPP---ELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMT 64
A V++ +F A + T +++ KS +++D +G++L +K+E++ AS+TK+MT
Sbjct 7 AVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMT 66
Query 65 SYIIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGND 124
+ + + G++ + V N + S +Y+ + +++ G++++SGND
Sbjct 67 AVLAIES---GKMDQTVTVSANAVR-----TEGSAIYLTEGQKVKLKDLVYGLMLRSGND 118
Query 125 ASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGL-PAEGHYSSAKDMAILAQHI 183
A+ A+AEHV G+ F +MMNQ+A++LGM NT F N GL E HYS+A DMAIL ++
Sbjct 119 AAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTKYA 178
Query 184 --IKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRG 241
+KD K K T + + L P G KTG+T A L +++ +
Sbjct 179 MKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKD 238
Query 242 PMRLISV 248
+ LI+V
Sbjct 239 GIDLIAV 245
Score = 17.7 bits (34), Expect = 8.0
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 0/18 (0%)
Query 185 KDSSKYYPIYSEKEFTFN 202
KD+SK I E FN
Sbjct 323 KDASKIPDIVGHMEIMFN 340
>P72161 D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=310
Score = 84.0 bits (206), Expect = 2e-21
Identities = 76/262 (29%), Positives = 128/262 (49%), Gaps = 34/262 (13%)
Query 7 LAALVLLPTFSYAATVLTTPP---------ELNNKSYVLMDYETGQILASKNENEHLAPA 57
L+ + L + S A V +PP EL + S ++ D TG++L S+N + + A
Sbjct 6 LSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDLVVPIA 65
Query 58 SMTKMMTSYIIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGI 117
S+TK+MT+ ++ L L E + ++E++ RG S V + + +ML
Sbjct 66 SITKLMTAMVVLDSKLP--LDEVLPIAISETSEMRGVFSR----VRVGSQISRRDMLLLA 119
Query 118 IVQSGNDASKAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMA 177
++ S N A+ ++A++ G + F MN +A LGM NT ++ TGL + S+A+D+
Sbjct 120 LMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLH-NVSTARDLT 178
Query 178 ILAQHIIKDSSKYYPIYS------EKEFTFN----GIKQGNRNALLYTDP-SVDGLKTGH 226
L +S+ YP+ S EK F + N N L+ ++ KTG
Sbjct 179 RLLV-----ASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGF 233
Query 227 TSEAGYCLT--TSSKRGPMRLI 246
T+EAG+CL T+ R P+ L+
Sbjct 234 TNEAGHCLVMRTTINRSPVNLV 255
>P0AFI5 D-alanyl-D-alanine endopeptidase [Escherichia coli (strain
K12)]
Length=310
Score = 81.3 bits (199), Expect = 2e-20
Identities = 77/265 (29%), Positives = 129/265 (49%), Gaps = 26/265 (10%)
Query 19 AATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELT 78
AA + PE+ + S +++D T +++ S + + AS++K+MT+ ++ L L
Sbjct 28 AAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLP--LD 85
Query 79 EGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEG 138
E +V ++++ +G S V LN + +ML ++ S N A+ ++A H G
Sbjct 86 EKLKVDISQTPEMKGVYSR----VRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYK 141
Query 139 TFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYS--- 195
F MN +AK LGM NT F+ TGL + S+A+D+ L +SK YP+
Sbjct 142 AFIKAMNAKAKSLGMNNTRFVEPTGLSVH-NVSTARDLTKLL-----IASKQYPLIGQLS 195
Query 196 ---EKEFTFNG----IKQGNRNALLYTDP-SVDGLKTGHTSEAGYCLT--TSSKRGPMRL 245
E TF+ + N N L+Y D ++ KTG T+ AG+CL T P+ L
Sbjct 196 TTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVAL 255
Query 246 ISV-IFGTTSVNERANQTRTLLAWG 269
+ + FG + A++ RT + G
Sbjct 256 VVMDAFGKYTHFADASRLRTWIETG 280
>O53380 D-alanyl-D-alanine carboxypeptidase DacB1 [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=405
Score = 81.3 bits (199), Expect = 3e-20
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 17/253 (7%)
Query 26 PPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSYIIEQKLLKGELTEGEQVRM 85
P +++ +++++ D ++G ++A+++ + PAS+ K++ + L + G
Sbjct 89 PGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTA--- 145
Query 86 NESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHVAGNEGTFAHMMN 145
+ A G+ + V GT TV ++L G+++ SGNDA+ A+A + G +N
Sbjct 146 -DDAAVEGTK----VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKIN 199
Query 146 QEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKDSSKYYPIYSEKEFTFNG-- 203
A +LG +T +GL G +SA D+ + ++ ++ + I + + F F G
Sbjct 200 LLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPV-FADIVATRTFDFPGHG 258
Query 204 ----IKQGNRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLISVIF-GTTSVNER 258
+ N N LLY P G KTG+T +AG ++ R RL++V+ GT
Sbjct 259 DHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPP 318
Query 259 ANQTRTLLAWGFS 271
Q LL +GF+
Sbjct 319 WEQAAHLLDYGFN 331
Lambda K H a alpha
0.317 0.130 0.369 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1607665
Database: d72788dfca2dffaaeb84dc6f94c9048e.SwissProt.fasta
Posted date: May 20, 2024 11:37 AM
Number of letters in database: 5,471
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
