BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: e6c0932e827f2e1d8c613e2639573f8e.SwissProt.fasta
           2 sequences; 1,122 total letters



Query= ACIAD1235

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q3M8C8 Lysine--tRNA ligase [Trichormus variabilis (strain ATCC 29...  37.4    3e-08
Q8YPW9 Lysine--tRNA ligase [Nostoc sp. (strain PCC 7120 / SAG 25....  37.4    3e-08


>Q3M8C8 Lysine--tRNA ligase [Trichormus variabilis (strain ATCC 
29413 / PCC 7937)]
Length=561

 Score = 37.4 bits (85),  Expect = 3e-08
 Identities = 16/60 (27%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  28   VKSWKYDANTRHLKIFYENGTGDLYHPVPLFIYDNLLRAHDKAAFVHKYIEFDLHFNRVS  87
            +K ++Y++ T+ L + +++G+   Y  VPL + + L  A  K  + HK+I+    + ++S
Sbjct  502  IKEYRYESTTQTLTMEFDSGSVYEYFKVPLTVKEELDNAPSKGQYFHKFIKGKFKYEQLS  561


 Score = 17.3 bits (33),  Expect = 0.35
 Identities = 7/16 (44%), Positives = 10/16 (63%), Gaps = 1/16 (6%)

Query  19   GAYMHKLVSVKSWKYD  34
            G Y HK +  K +KY+
Sbjct  544  GQYFHKFIKGK-FKYE  558


 Score = 13.5 bits (23),  Expect = 7.1
 Identities = 5/8 (63%), Positives = 5/8 (63%), Gaps = 0/8 (0%)

Query  45  ENGTGDLY  52
           E GT  LY
Sbjct  78  ETGTIQLY  85


>Q8YPW9 Lysine--tRNA ligase [Nostoc sp. (strain PCC 7120 / SAG 
25.82 / UTEX 2576)]
Length=561

 Score = 37.4 bits (85),  Expect = 3e-08
 Identities = 16/60 (27%), Positives = 35/60 (58%), Gaps = 0/60 (0%)

Query  28   VKSWKYDANTRHLKIFYENGTGDLYHPVPLFIYDNLLRAHDKAAFVHKYIEFDLHFNRVS  87
            +K+++Y+  T+ L + +++G+   Y  VPL + + L  A  K  + HK+I+    + ++S
Sbjct  502  IKAYRYEPTTQTLTLEFDSGSIYEYFKVPLTVKEELDNAPSKGQYFHKFIKGQFKYEQLS  561


 Score = 15.8 bits (29),  Expect = 1.2
 Identities = 6/16 (38%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query  19   GAYMHKLVSVKSWKYD  34
            G Y HK +    +KY+
Sbjct  544  GQYFHKFIK-GQFKYE  558


 Score = 13.5 bits (23),  Expect = 7.1
 Identities = 5/8 (63%), Positives = 5/8 (63%), Gaps = 0/8 (0%)

Query  45  ENGTGDLY  52
           E GT  LY
Sbjct  78  ETGTIQLY  85



Lambda      K        H        a         alpha
   0.332    0.144    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 68480


  Database: e6c0932e827f2e1d8c613e2639573f8e.SwissProt.fasta
    Posted date:  May 20, 2024  6:36 PM
  Number of letters in database: 1,122
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40