BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 8fc98855f7c5bb37a294fc4ae9eb1545.SwissProt.fasta
13 sequences; 10,877 total letters
Query= ACIAD1334
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
A9A6N2 Replication factor C large subunit [Methanococcus maripalu... 40.8 6e-07
A6VIW1 Replication factor C large subunit [Methanococcus maripalu... 40.4 8e-07
Q9UWR2 Replication factor C large subunit [Pyrococcus furiosus (s... 39.7 1e-06
A4FZL6 Replication factor C large subunit [Methanococcus maripalu... 39.3 2e-06
Q6M0E9 Replication factor C large subunit [Methanococcus maripalu... 38.9 2e-06
A6URV8 Replication factor C large subunit [Methanococcus vannieli... 38.9 2e-06
O74894 26S proteasome regulatory subunit 6B homolog [Schizosaccha... 37.4 7e-06
Q21NS8 ATP-dependent lipid A-core flippase [Saccharophagus degrad... 37.0 1e-05
Q8TUS5 L-seryl-tRNA(Sec) kinase [Methanopyrus kandleri (strain AV... 36.2 1e-05
A0A1P8AUY4 Midasin [Arabidopsis thaliana] 36.2 2e-05
Q5JHP1 Replication factor C large subunit [Thermococcus kodakaren... 35.8 2e-05
P45759 Putative type II secretion system protein E [Escherichia c... 35.0 4e-05
P31205 Magnesium-chelatase subunit ChlI [Euglena gracilis] 34.7 5e-05
>A9A6N2 Replication factor C large subunit [Methanococcus maripaludis
(strain C6 / ATCC BAA-1332)]
Length=484
Score = 40.8 bits (94), Expect = 6e-07
Identities = 27/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query 40 KWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTI 99
+W +K + PK L+D+ G K+ +I+ F+ G ILL G G+GK+T+
Sbjct 3 EWVEK-----YRPKS--LNDVAGHNKTKETLIEWIESFVSGQKQKPILLAGPPGSGKTTL 55
Query 100 VRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRA 136
A+ Y + +IE+ D R+ +I ++ A
Sbjct 56 AYAIAKDYAYD---VIELNASDKRNKDVISQVVGTAA 89
>A6VIW1 Replication factor C large subunit [Methanococcus maripaludis
(strain C7 / ATCC BAA-1331)]
Length=482
Score = 40.4 bits (93), Expect = 8e-07
Identities = 27/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query 40 KWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTI 99
+W +K + PK L+D+ G K+ +I+ F+ G ILL G G+GK+T+
Sbjct 3 EWVEK-----YRPKS--LNDVAGHNKTKESLIEWIESFINGQKQKPILLAGPPGSGKTTL 55
Query 100 VRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRA 136
A+ Y +IE+ D R+ +I ++ A
Sbjct 56 AYAIAKDY---AFDVIELNASDKRNKDVISQVVGTAA 89
>Q9UWR2 Replication factor C large subunit [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=479
Score = 39.7 bits (91), Expect = 1e-06
Identities = 54/226 (24%), Positives = 94/226 (42%), Gaps = 36/226 (16%)
Query 37 PAFKWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPAND--ILLTGSRGT 94
P W +K + PKK L ++ E +K+ +L G P +LL G G+
Sbjct 2 PELPWVEK-----YRPKK--LSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGS 54
Query 95 GKSTIVRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADR-------AEKFIVYCDDLA 147
GK+T V AL N Y + +IE+ D R I + + I++ D+ A
Sbjct 55 GKTTTVYALANEYNFE---VIELNASDERTYEKISRYVQAAYTMDILGKRRKIIFLDE-A 110
Query 148 FNAEDENYRSLKSVLDGSLQSGSSNFIIYATSNRRHLLPEFMHENTPVTKVDVPQYKELH 207
N E + + ++D + N II A +N+ +P+ + E K ++ +YK L
Sbjct 111 DNIEPSGAKEIAKLID-----KAKNPIIMA-ANKYWEVPKEIRE-----KAELVEYKRLT 159
Query 208 PQEAIEEKISLSDRFGMWLSFYPMDQALYLEIVEHYITQANLIFND 253
++ + I + R G+ + + + LEI + ND
Sbjct 160 QRDVMNALIRILKREGI-----TVPKEILLEIAKRSSGDLRAAIND 200
>A4FZL6 Replication factor C large subunit [Methanococcus maripaludis
(strain C5 / ATCC BAA-1333)]
Length=484
Score = 39.3 bits (90), Expect = 2e-06
Identities = 27/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query 40 KWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTI 99
+W +K + PK L+D+ G K+ +I F+ G ILL G G+GK+T+
Sbjct 3 EWVEK-----YRPKS--LNDVAGHNKTKQALINWIESFVNGQKQKPILLAGPPGSGKTTL 55
Query 100 VRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRA 136
A+ Y +IE+ D R+ +I ++ A
Sbjct 56 AHAIAKDY---AFDVIELNASDKRNKDVIAQVVGTAA 89
>Q6M0E9 Replication factor C large subunit [Methanococcus maripaludis
(strain S2 / LL)]
Length=486
Score = 38.9 bits (89), Expect = 2e-06
Identities = 27/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query 40 KWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTI 99
+W +K + PK L+D+ G K+ +I+ + G ILL G G+GK+T+
Sbjct 3 EWVEK-----YRPKS--LNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTL 55
Query 100 VRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRA 136
A+ N Y +IE+ D R+ +I ++ A
Sbjct 56 AYAIANDY---AFDVIELNASDKRNKDVISQVVGTAA 89
>A6URV8 Replication factor C large subunit [Methanococcus vannielii
(strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 /
SB)]
Length=492
Score = 38.9 bits (89), Expect = 2e-06
Identities = 26/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query 40 KWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTI 99
+W +K + PK L+D+ G K+ + F++G +LL G G+GK+T+
Sbjct 3 EWVEK-----YRPKS--LNDVAGHSKTKEALCYWIESFIRGNKQKPVLLFGPPGSGKTTM 55
Query 100 VRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRA 136
A+ N Y +IE+ D R+ +I ++ A
Sbjct 56 AHAIANDYNFD---VIELNASDKRNKDVISQVVGTAA 89
>O74894 26S proteasome regulatory subunit 6B homolog [Schizosaccharomyces
pombe (strain 972 / ATCC 24843)]
Length=389
Score = 37.4 bits (85), Expect = 7e-06
Identities = 41/186 (22%), Positives = 87/186 (47%), Gaps = 28/186 (15%)
Query 59 DLKGIETQKKKIIQNT-LQFLQGL--------PANDILLTGSRGTGKSTIVRALLNTYQH 109
D+ G++ QK+++ + L QG P +LL G GTGK+ +V+A+ N+
Sbjct 135 DVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAA 194
Query 110 QGLRLI--EIERDDLRDLP-LIQNI--IADRAEKFIVYCDDL------AFNAEDENYRSL 158
+R++ E + L + P +++++ +A I++ D++ F+A+ R +
Sbjct 195 NFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREV 254
Query 159 KSVL-------DGSLQSGSSNFIIYATSNRRHLLPEFMHENTPVTKVDVPQYKELHPQEA 211
+ +L DG G++ +I AT+ L P + K++ P Y++ +
Sbjct 255 QRILIELLTQMDG-FDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRL 313
Query 212 IEEKIS 217
+ + I+
Sbjct 314 VFQTIT 319
>Q21NS8 ATP-dependent lipid A-core flippase [Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)]
Length=586
Score = 37.0 bits (84), Expect = 1e-05
Identities = 30/97 (31%), Positives = 50/97 (52%), Gaps = 4/97 (4%)
Query 82 PANDILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRDLPL--IQNIIADRAEKF 139
P + L GS G+GKSTIV LL Y +Q I I+ ++ L L ++ IA ++
Sbjct 374 PGQTVALVGSSGSGKSTIVSLLLRFYDNQ-QGSITIDGTPIQSLELHNLREHIALVNQQT 432
Query 140 IVYCDDLAFN-AEDENYRSLKSVLDGSLQSGSSNFII 175
I++ D +A N A + + D + Q+ + +FI+
Sbjct 433 ILFNDTIAANIAYGSEHIDEARIQDAAKQANAHDFIM 469
>Q8TUS5 L-seryl-tRNA(Sec) kinase [Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938)]
Length=255
Score = 36.2 bits (82), Expect = 1e-05
Identities = 23/81 (28%), Positives = 38/81 (47%), Gaps = 9/81 (11%)
Query 86 ILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRDL------PLIQNIIADRAEKF 139
++LTG G+GK+ R L + +G R+ +E D LR P ++ + + K
Sbjct 4 LILTGPPGSGKTCFARELARELRQEGWRVAHVEADALRGFLWDEFDPKLEQVARELFLKS 63
Query 140 IVYCDDLAFN---AEDENYRS 157
+ C D + A+D NY S
Sbjct 64 VETCLDAELDLVIADDTNYYS 84
>A0A1P8AUY4 Midasin [Arabidopsis thaliana]
Length=5400
Score = 36.2 bits (82), Expect = 2e-05
Identities = 24/81 (30%), Positives = 42/81 (52%), Gaps = 1/81 (1%)
Query 46 LKPIFDPKKFDLDDLKGIETQKKKIIQNTLQFLQGLP-ANDILLTGSRGTGKSTIVRALL 104
+ P F K + ++ G E +N L+ L+ + + ILL GS G GK++++ AL
Sbjct 1741 IDPFFISKGDENPEIGGFEFLAPTTHRNVLRVLRAMQLSKPILLEGSPGVGKTSLILALG 1800
Query 105 NTYQHQGLRLIEIERDDLRDL 125
H+ +R+ E+ D+ DL
Sbjct 1801 KYSGHKVVRINLSEQTDMMDL 1821
Score = 26.6 bits (57), Expect = 0.023
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (5%)
Query 125 LPLIQNIIADRAEKFIVYCDDLAFNAEDENYRSLKSVLDGSLQSGSSNFIIYATSNRRHL 184
LP+I+N++ DR + DDL + + + + SVLD ++ G S Y +R
Sbjct 67 LPIIRNVV-DRVVGLLRLVDDLKSSIDYSD--DVSSVLDNAMTEGISVIDFYVRRGQRLE 123
Query 185 LPE 187
L E
Sbjct 124 LHE 126
Score = 25.8 bits (55), Expect = 0.040
Identities = 14/39 (36%), Positives = 21/39 (54%), Gaps = 3/39 (8%)
Query 86 ILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRD 124
+LL G G+GKS ++R L + G ++ I DD D
Sbjct 356 VLLYGPSGSGKSALIRKLAD---ESGNHVVFIHMDDQLD 391
Score = 25.8 bits (55), Expect = 0.040
Identities = 14/40 (35%), Positives = 23/40 (58%), Gaps = 0/40 (0%)
Query 86 ILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRDL 125
+LL G GTGK+T+V+ L + + L ++ D+ DL
Sbjct 670 VLLVGETGTGKTTLVQNLAHWIGQKLTVLNLSQQSDIVDL 709
Score = 25.8 bits (55), Expect = 0.040
Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 32/157 (20%)
Query 86 ILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADRAEKFI----- 140
+LL G +GK+++V+ L ++ +R+ E+ D+++ + + + D + K +
Sbjct 1075 VLLQGPTSSGKTSLVKYLAAISGNKFVRINNHEQTDIQE--YLGSYMTDSSGKLVFHEGA 1132
Query 141 ----------VYCDDLAFNAEDENYRSLKSVLDGSLQ----------SGSSNFIIYATSN 180
+ D+L A + +L +LD + + S NF+++AT N
Sbjct 1133 LVKAVRGGHWIVLDELNL-APSDVLEALNRLLDDNRELFVPELSETISAHPNFMLFATQN 1191
Query 181 RRHLLPEFMHENTPVTKVDVPQYKELHPQEAIEEKIS 217
P +++ ++ E+H E E+++S
Sbjct 1192 P----PTLYGGRKILSRAFRNRFVEIHVDEIPEDELS 1224
Score = 21.6 bits (44), Expect = 0.84
Identities = 9/18 (50%), Positives = 12/18 (67%), Gaps = 0/18 (0%)
Query 86 ILLTGSRGTGKSTIVRAL 103
+LL G G GK+TI + L
Sbjct 1365 VLLVGDTGGGKTTICQIL 1382
Score = 20.0 bits (40), Expect = 2.5
Identities = 26/110 (24%), Positives = 44/110 (40%), Gaps = 15/110 (14%)
Query 15 SQVLNQLHEVLPKIRQEPDFSAPAFKWQDKQLKPIFDPKKFDLDDLKGIETQKKKIIQNT 74
S + ++ ++LP+IRQ + A A Q+K L + P + K +
Sbjct 2061 SNIASEQLKLLPEIRQ--NLEAVAHCVQNKWLCILVGP-----------SSSGKTSVIRI 2107
Query 75 LQFLQGLPANDILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRD 124
L L G P N++ L S T S ++ + RL+ + L D
Sbjct 2108 LAQLTGYPLNELNL--SSATDSSDLLGCFEQYNAFRNFRLVMTRVEHLVD 2155
>Q5JHP1 Replication factor C large subunit [Thermococcus kodakarensis
(strain ATCC BAA-918 / JCM 12380 / KOD1)]
Length=499
Score = 35.8 bits (81), Expect = 2e-05
Identities = 35/146 (24%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query 86 ILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIERDDLRDLPLIQNIIADR-------AEK 138
+LL G G GK+T V AL N Y G +IE+ D R I+ + +
Sbjct 46 LLLAGPPGVGKTTTVYALANEY---GFEVIELNASDERTYEKIERYVQAAYTMDILGKRR 102
Query 139 FIVYCDDLAFNAEDENYRSLKSVLDGSLQSGSSNFIIYATSNRRHLLPEFMHENTPVTKV 198
+++ D+ A N E R + ++D + N II + ++ + E + K
Sbjct 103 KLIFLDE-ADNIEPSGAREIAKLID-----KARNPIIMSANHYWEVPREIRN------KA 150
Query 199 DVPQYKELHPQEAIEEKISLSDRFGM 224
+ +YK L ++ I+ + + R G+
Sbjct 151 QIVEYKRLTQRDIIKALVRILKREGL 176
>P45759 Putative type II secretion system protein E [Escherichia
coli (strain K12)]
Length=493
Score = 35.0 bits (79), Expect = 4e-05
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query 62 GIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTIVRALLNTYQHQGLRLIEIE 118
G+ K+ ++N +Q LP IL+TG G+GKST + A+L+ G ++ +E
Sbjct 225 GMTAADKQDLENLIQ----LPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVE 277
>P31205 Magnesium-chelatase subunit ChlI [Euglena gracilis]
Length=348
Score = 34.7 bits (78), Expect = 5e-05
Identities = 20/51 (39%), Positives = 28/51 (55%), Gaps = 4/51 (8%)
Query 55 FDLDDLKGIETQKKKIIQNTLQFLQGLPANDILLTGSRGTGKSTIVRALLN 105
F + G E K +I N + G +++ G RGTGKSTIVRAL++
Sbjct 11 FPFTSIVGQEEMKLSLILNVIDPKIG----GVMIMGDRGTGKSTIVRALVD 57
Lambda K H a alpha
0.321 0.137 0.402 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2499245
Database: 8fc98855f7c5bb37a294fc4ae9eb1545.SwissProt.fasta
Posted date: Jun 3, 2024 2:10 AM
Number of letters in database: 10,877
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
