BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 2542bbe625cc31597d07df7582d30662.SwissProt.fasta
           1 sequences; 209 total letters



Query= ACIAD1349

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76657 Inner membrane protein YqiJ [Escherichia coli (strain K12)]    60.1    5e-16


>P76657 Inner membrane protein YqiJ [Escherichia coli (strain 
K12)]
Length=209

 Score = 60.1 bits (144),  Expect = 5e-16
 Identities = 47/200 (24%), Positives = 91/200 (46%), Gaps = 23/200 (12%)

Query  9    YFMPFNLSVIALLILSMAETIGIYIGLRPSTFLKKFLPRWLSNSP--------LVNVKFS  60
            Y  P+  ++  +L++ + E   +  G   S  L   L  + S +          +N+   
Sbjct  7    YNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLDHYDSITTGHISQALHYLNIGRL  66

Query  61   KVLILVFFLINF-SFAGYFLQ-LCVFAQQQFFISPFYLIIPALIIGIFFTVFMIHCLDQV  118
              L+++  L  F    G  LQ  C+   Q    + F  ++P   + + FT+  +H   ++
Sbjct  67   PALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLF--VVP---VSLLFTIIAVHYTGKI  121

Query  119  IKPQVEHQYSSLL------GRLATISSGSARPGFSAQARVRDEFGQLHYVQVEPEFGELE  172
            + P +   +SS +      G +A I+   A  G   + ++ D+FGQ+HY+ +EPE G++ 
Sbjct  122  VAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGKLTDQFGQIHYLLLEPEEGKIF  181

Query  173  LQSQVILI--RFRQTHYIAK  190
             +   +LI  R   T Y+A+
Sbjct  182  TKGDKVLIICRLSATRYLAE  201



Lambda      K        H        a         alpha
   0.335    0.148    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 34216


  Database: 2542bbe625cc31597d07df7582d30662.SwissProt.fasta
    Posted date:  Jun 2, 2024  2:23 PM
  Number of letters in database: 209
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40