BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ae02e8946bcc14e1c940c524f6cc1515.SwissProt.fasta
           3 sequences; 375 total letters



Query= ACIAD1479

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AAR7 Inner membrane protein YbaN [Shigella flexneri]                79.7    2e-24
P0AAR6 Inner membrane protein YbaN [Escherichia coli O157:H7]         79.7    2e-24
P0AAR5 Inner membrane protein YbaN [Escherichia coli (strain K12)]    79.7    2e-24


>P0AAR7 Inner membrane protein YbaN [Shigella flexneri]
Length=125

 Score = 79.7 bits (195),  Expect = 2e-24
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 0/111 (0%)

Query  33   RWVFIGLAWLCIALGILGIFIPGLPTVDFIILAVFFAARGSEKLHQWFRNHRYIGPLIRE  92
            R + I + WL + LG LG+ +P LPT  FI+LA +  AR S + H W     + G  +R 
Sbjct  3    RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF  62

Query  93   WQEHRRISKKAKYISTLSMSLAAGLMIWTIPHPWFVYPAILCMAGVLAWMW  143
            WQ+H  + +  K  + L + L   + +W +  PW     ++ +A +L +MW
Sbjct  63   WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMW  113


>P0AAR6 Inner membrane protein YbaN [Escherichia coli O157:H7]
Length=125

 Score = 79.7 bits (195),  Expect = 2e-24
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 0/111 (0%)

Query  33   RWVFIGLAWLCIALGILGIFIPGLPTVDFIILAVFFAARGSEKLHQWFRNHRYIGPLIRE  92
            R + I + WL + LG LG+ +P LPT  FI+LA +  AR S + H W     + G  +R 
Sbjct  3    RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF  62

Query  93   WQEHRRISKKAKYISTLSMSLAAGLMIWTIPHPWFVYPAILCMAGVLAWMW  143
            WQ+H  + +  K  + L + L   + +W +  PW     ++ +A +L +MW
Sbjct  63   WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMW  113


>P0AAR5 Inner membrane protein YbaN [Escherichia coli (strain 
K12)]
Length=125

 Score = 79.7 bits (195),  Expect = 2e-24
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 0/111 (0%)

Query  33   RWVFIGLAWLCIALGILGIFIPGLPTVDFIILAVFFAARGSEKLHQWFRNHRYIGPLIRE  92
            R + I + WL + LG LG+ +P LPT  FI+LA +  AR S + H W     + G  +R 
Sbjct  3    RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF  62

Query  93   WQEHRRISKKAKYISTLSMSLAAGLMIWTIPHPWFVYPAILCMAGVLAWMW  143
            WQ+H  + +  K  + L + L   + +W +  PW     ++ +A +L +MW
Sbjct  63   WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMW  113



Lambda      K        H        a         alpha
   0.333    0.142    0.501    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 38934


  Database: ae02e8946bcc14e1c940c524f6cc1515.SwissProt.fasta
    Posted date:  May 20, 2024  6:39 PM
  Number of letters in database: 375
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40