BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6f8f10ed91d6b6227f4aa2c16e17ede6.SwissProt.fasta
10 sequences; 1,766 total letters
Query= ACIAD1493
Length=281
Score E
Sequences producing significant alignments: (Bits) Value
P73475 Universal stress protein Slr1230 [Synechocystis sp. (strai... 118 2e-35
P42297 Universal stress protein YxiE [Bacillus subtilis (strain 1... 49.3 3e-11
Q57951 Universal stress protein MJ0531 [Methanocaldococcus jannas... 42.0 1e-08
Q83M07 Universal stress protein G [Shigella flexneri] 41.2 2e-08
Q8XBT3 Universal stress protein G [Escherichia coli O157:H7] 41.2 2e-08
P39177 Universal stress protein UP12 [Escherichia coli (strain K12)] 41.2 2e-08
Q8FK07 Universal stress protein G [Escherichia coli O6:H1 (strain... 40.0 4e-08
P67093 Universal stress protein G [Salmonella typhimurium (strain... 38.5 1e-07
P67094 Universal stress protein G [Salmonella typhi] 38.5 1e-07
Q9ZE60 Elongation factor Ts [Rickettsia prowazekii (strain Madrid... 36.2 2e-06
>P73475 Universal stress protein Slr1230 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=287
Score = 118 bits (296), Expect = 2e-35
Identities = 79/285 (28%), Positives = 140/285 (49%), Gaps = 9/285 (3%)
Query 1 MNRVIACIDSSPCINAIAEAAAWVARQTKRELVLLQILDYYPA-SYHLGEISGVIGFESN 59
M ++ C D S AAW+A + + +L + D + +SG IG ++
Sbjct 1 MKNILLCTDGSDFAQQSYPYAAWLASKLGGNIKVLYVTDIRAQKAVESVNLSGSIGLGTS 60
Query 60 AMLLKELAELEQKQSDLAIDYSNNLLKHISDMILEKYGIQSTKIQEKGDFLEQSFNVLR- 118
LLK+L +LE ++ L + +L + L++ GI+S ++ K FL L+
Sbjct 61 EELLKQLVDLEHTKAKLNHQKAKLVLATAKNT-LQQAGIESVQVMHKTGFLLDCLEDLKG 119
Query 119 ETDFVIIGKVGERAAEKNKPIGSNVENFIRGANCTVMTVGEHFKIPTRFIFAYEYSPTCL 178
+ D +I+GK GE A +G+N+E IR + + F+ T+ +FAY+ S +C
Sbjct 120 DFDVIILGKRGETAKFAQGHLGANMERIIRSIPKPCLVTPKQFQTITKVLFAYDGSASCQ 179
Query 179 NLMQRIAQSDLLKTLQCHLLYVG---DHPEVLKD---PEEFLKNAGLDVITVYRYGDVAE 232
++Q +A S LL L H++ VG P+ + + E+ L+ AG + G E
Sbjct 180 KILQFLAGSSLLADLPLHIVTVGKTNQDPQAIANLGTAEKVLEKAGFKLEVELLVGHAEE 239
Query 233 NILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLL 277
I+ YQ++ I ++++GA HS+I +GS + R ++P+L
Sbjct 240 AIVRYQEDNAIDLLLMGAHGHSRIRHLVIGSTTAQVLRKTSIPVL 284
Score = 15.8 bits (29), Expect = 7.2
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (3%)
Query 121 DFVIIGKVGERAAEKNKPIGSNVENFIRGANCTVMT 156
D +++G G ++ IGS +R + V+T
Sbjct 251 DLLLMGAHGHSRI-RHLVIGSTTAQVLRKTSIPVLT 285
>P42297 Universal stress protein YxiE [Bacillus subtilis (strain
168)]
Length=148
Score = 49.3 bits (116), Expect = 3e-11
Identities = 29/97 (30%), Positives = 53/97 (55%), Gaps = 13/97 (13%)
Query 197 LLYVGDH------PEVLKDPEEFLKNA-------GLDVITVYRYGDVAENILEYQKELGI 243
++YV +H EV K+ + L+NA G+ T+Y G+ A IL + KE G+
Sbjct 52 IVYVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGV 111
Query 244 QMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
+IV+G+ S + + LGS++ + + +T P+L+ +
Sbjct 112 SLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
Score = 19.2 bits (38), Expect = 0.48
Identities = 8/27 (30%), Positives = 16/27 (59%), Gaps = 0/27 (0%)
Query 109 FLEQSFNVLRETDFVIIGKVGERAAEK 135
F+++ N +++ I+ E+AAEK
Sbjct 59 FIDEIRNEVKKEGLKILENAKEKAAEK 85
>Q57951 Universal stress protein MJ0531 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=170
Score = 42.0 bits (97), Expect = 1e-08
Identities = 22/76 (29%), Positives = 40/76 (53%), Gaps = 0/76 (0%)
Query 205 EVLKDPEEFLKNAGLDVITVYRYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSI 264
E LK ++ + G+ + T G A I+E+ ++ +IV+G + + + LGS+
Sbjct 90 EALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSV 149
Query 265 ATSIFRNATVPLLVAK 280
A + +NA P+LV K
Sbjct 150 AERVIKNAHCPVLVVK 165
Score = 28.1 bits (61), Expect = 6e-04
Identities = 33/159 (21%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
Query 3 RVIACIDSSPCINAIAEAAAWVARQTKRELVLLQILDYYPASYHLGEISGVIGF--ESNA 60
+++ D S A+ A +A++ E+ + ++D +S +G E +
Sbjct 28 KIVIPTDGSDVSLEAAKHAINIAKEFDAEVYAIYVVD----------VSPFVGLPAEGSW 77
Query 61 MLLKELAELEQKQSDLAIDYSNNLLKHISDMILEKYGIQSTKIQEKGDFLEQ--SFNVLR 118
L+ EL + E +++ LK + M E++G++ +G + F +
Sbjct 78 ELISELLKEEGQEA----------LKKVKKMA-EEWGVKIHTEMLEGVPANEIVEFAEKK 126
Query 119 ETDFVIIGKVGERAAEKNKPIGSNVENFIRGANCTVMTV 157
+ D +++G G+ E+ +GS E I+ A+C V+ V
Sbjct 127 KADLIVMGTTGKTGLERIL-LGSVAERVIKNAHCPVLVV 164
>Q83M07 Universal stress protein G [Shigella flexneri]
Length=142
Score = 41.2 bits (95), Expect = 2e-08
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (2%)
Query 226 RYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
R+G V + + E +ELG ++V+G+ + S I LGS A+S+ R+A +P+LV +
Sbjct 89 RFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142
>Q8XBT3 Universal stress protein G [Escherichia coli O157:H7]
Length=142
Score = 41.2 bits (95), Expect = 2e-08
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (2%)
Query 226 RYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
R+G V + + E +ELG ++V+G+ + S I LGS A+S+ R+A +P+LV +
Sbjct 89 RFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142
>P39177 Universal stress protein UP12 [Escherichia coli (strain
K12)]
Length=142
Score = 41.2 bits (95), Expect = 2e-08
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (2%)
Query 226 RYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
R+G V + + E +ELG ++V+G+ + S I LGS A+S+ R+A +P+LV +
Sbjct 89 RFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142
>Q8FK07 Universal stress protein G [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=142
Score = 40.0 bits (92), Expect = 4e-08
Identities = 21/55 (38%), Positives = 35/55 (64%), Gaps = 1/55 (2%)
Query 226 RYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
R+G V + + E KEL ++V+G+ + S I LGS A+S+ R+A +P+LV +
Sbjct 89 RFGSVRDEVNELAKELDADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142
>P67093 Universal stress protein G [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=142
Score = 38.5 bits (88), Expect = 1e-07
Identities = 22/58 (38%), Positives = 37/58 (64%), Gaps = 1/58 (2%)
Query 223 TVYRYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
T R+G V + + E +EL ++V+G+ + S I LGS A+S+ R+AT+P+LV +
Sbjct 86 THVRFGSVRDVVNEMGEELDADVVVIGSRNPS-ITTHLLGSNASSVVRHATLPVLVVR 142
>P67094 Universal stress protein G [Salmonella typhi]
Length=142
Score = 38.5 bits (88), Expect = 1e-07
Identities = 22/58 (38%), Positives = 37/58 (64%), Gaps = 1/58 (2%)
Query 223 TVYRYGDVAENILEYQKELGIQMIVLGAFSHSKIHQFFLGSIATSIFRNATVPLLVAK 280
T R+G V + + E +EL ++V+G+ + S I LGS A+S+ R+AT+P+LV +
Sbjct 86 THVRFGSVRDVVNEMGEELDADVVVIGSRNPS-ITTHLLGSNASSVVRHATLPVLVVR 142
>Q9ZE60 Elongation factor Ts [Rickettsia prowazekii (strain Madrid
E)]
Length=309
Score = 36.2 bits (82), Expect = 2e-06
Identities = 30/93 (32%), Positives = 48/93 (52%), Gaps = 14/93 (15%)
Query 28 TKRELVLLQILDYYPASY-------HLGEISGVIGFESNAMLLKELAELEQKQSDLAIDY 80
T R + +L+I + SY HLG+IS ++G ESNA K+ +LE +A+
Sbjct 138 TLRRMDILEISNGAIGSYVHNEVVPHLGKISVLVGLESNA---KDKVKLEALAKQIAVHV 194
Query 81 SNNLLKHISDMILEKYGIQSTKIQEKGDFLEQS 113
+ N + I + L+K I+ +EK F E+S
Sbjct 195 AGNNPQSIDTLSLDKSLIE----REKKVFFEKS 223
Lambda K H a alpha
0.323 0.139 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 340624
Database: 6f8f10ed91d6b6227f4aa2c16e17ede6.SwissProt.fasta
Posted date: Jun 3, 2024 10:37 AM
Number of letters in database: 1,766
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
