BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 112b0de6abd8fbdcbc5aeaa121e834e4.SwissProt.fasta
1 sequences; 276 total letters
Query= ACIAD1552
Length=63
Score E
Sequences producing significant alignments: (Bits) Value
Q00462 Probable transposase for insertion sequence element IS702 ... 32.7 1e-07
>Q00462 Probable transposase for insertion sequence element IS702
[Microchaete diplosiphon]
Length=276
Score = 32.7 bits (73), Expect = 1e-07
Identities = 16/26 (62%), Positives = 20/26 (77%), Gaps = 1/26 (4%)
Query 17 NVVIIDVTEIPIQRPKK-QSSCHSGK 41
N+V++DVTE PI+RPKK Q SGK
Sbjct 114 NLVVMDVTESPIERPKKSQKKFFSGK 139
Score = 18.1 bits (35), Expect = 0.023
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 8 ISAGEGIDWNVVIIDVTEIPIQRPK 32
+ A +G I ++E PI++PK
Sbjct 187 VIADKGYQGITKIHKLSETPIKKPK 211
Lambda K H a alpha
0.327 0.141 0.439 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 12838
Database: 112b0de6abd8fbdcbc5aeaa121e834e4.SwissProt.fasta
Posted date: May 13, 2024 4:16 AM
Number of letters in database: 276
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40