BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 3618e50c8f5e08f1740b1fbd74df4f6c.SwissProt.fasta
           6 sequences; 885 total letters



Query= ACIAD1559

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P62574 Homoprotocatechuate degradative operon repressor [Shigella...  63.9    1e-18
P62573 Homoprotocatechuate degradative operon repressor [Escheric...  63.9    1e-18
P0DPR8 HTH-type transcriptional regulator FarR [Neisseria gonorrh...  63.5    2e-18
Q8CN77 HTH-type transcriptional regulator SarZ [Staphylococcus ep...  33.1    6e-07
Q5HLK8 HTH-type transcriptional regulator SarZ [Staphylococcus ep...  33.1    6e-07
O34777 Organic hydroperoxide resistance transcriptional regulator...  32.3    1e-06


>P62574 Homoprotocatechuate degradative operon repressor [Shigella 
flexneri]
Length=148

 Score = 63.9 bits (154),  Expect = 1e-18
 Identities = 34/82 (41%), Positives = 54/82 (66%), Gaps = 2/82 (2%)

Query  1    LAERACILKPSLTGILNRMQN--LVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA RACIL+PSLTGIL RM+   LV++ K   DQR   I L++EG   +     ++E++Y
Sbjct  51   LAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRAQTQIEEAY  110

Query  59   ARIQELYGEEKLKELIEMLKDF  80
             +I+  +  EK+++L  +L++F
Sbjct  111  RQIEAQFTAEKMQQLTHLLEEF  132


>P62573 Homoprotocatechuate degradative operon repressor [Escherichia 
coli]
Length=148

 Score = 63.9 bits (154),  Expect = 1e-18
 Identities = 34/82 (41%), Positives = 54/82 (66%), Gaps = 2/82 (2%)

Query  1    LAERACILKPSLTGILNRMQN--LVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA RACIL+PSLTGIL RM+   LV++ K   DQR   I L++EG   +     ++E++Y
Sbjct  51   LAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRAQTQIEEAY  110

Query  59   ARIQELYGEEKLKELIEMLKDF  80
             +I+  +  EK+++L  +L++F
Sbjct  111  RQIEAQFTAEKMQQLTHLLEEF  132


>P0DPR8 HTH-type transcriptional regulator FarR [Neisseria gonorrhoeae]
Length=146

 Score = 63.5 bits (153),  Expect = 2e-18
 Identities = 33/85 (39%), Positives = 54/85 (64%), Gaps = 2/85 (2%)

Query  1    LAERACILKPSLTGILNRMQN--LVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA +ACIL+PSLTGIL R++   LV++ K   DQR   ++L+ EG   +E    ++++ Y
Sbjct  56   LANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVYLKLTSEGEKLYEEIGEEVDERY  115

Query  59   ARIQELYGEEKLKELIEMLKDFEKV  83
              I+E+ G EK+  L ++L +  K+
Sbjct  116  DAIEEVLGREKMLLLKDLLAELAKI  140


 Score = 15.8 bits (29),  Expect = 0.79
 Identities = 9/30 (30%), Positives = 17/30 (57%), Gaps = 1/30 (3%)

Query  23  VIKRKDEQDQRISLIR-LSEEGLNHFEHQA  51
           ++ + +  DQ+  +IR L+E G   F+  A
Sbjct  28  ILNQANITDQQWRIIRLLAENGTLDFQDLA  57


>Q8CN77 HTH-type transcriptional regulator SarZ [Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200)]
Length=148

 Score = 33.1 bits (74),  Expect = 6e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query  1    LAERACILKPSLTGILNRMQ--NLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            L ER  +   +LT +L +++  N VI+ ++EQD+R   I L+E G    + Q V  + S 
Sbjct  58   LGERVFLDSGTLTPLLKKLEKKNYVIRTREEQDERNLQISLTERGK---DIQNVLSDISQ  114

Query  59   ARIQEL-YGEEKLKELIEMLKDF  80
            +   E    +E+ + L+E L++F
Sbjct  115  SVFNEFNITQEETQNLVEDLQNF  137


>Q5HLK8 HTH-type transcriptional regulator SarZ [Staphylococcus 
epidermidis (strain ATCC 35984 / RP62A)]
Length=148

 Score = 33.1 bits (74),  Expect = 6e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query  1    LAERACILKPSLTGILNRMQ--NLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            L ER  +   +LT +L +++  N VI+ ++EQD+R   I L+E G    + Q V  + S 
Sbjct  58   LGERVFLDSGTLTPLLKKLEKKNYVIRTREEQDERNLQISLTERGK---DIQNVLSDISQ  114

Query  59   ARIQEL-YGEEKLKELIEMLKDF  80
            +   E    +E+ + L+E L++F
Sbjct  115  SVFNEFNITQEETQNLVEDLQNF  137


>O34777 Organic hydroperoxide resistance transcriptional regulator 
[Bacillus subtilis (strain 168)]
Length=147

 Score = 32.3 bits (72),  Expect = 1e-06
 Identities = 23/75 (31%), Positives = 44/75 (59%), Gaps = 4/75 (5%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            + E+  +   +LT +L RM  Q L+ +++ E+D+R  LI L+E+G    + +AV +  + 
Sbjct  60   MGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGA-LLKEKAVDIPGTI  118

Query  59   ARIQELYGEEKLKEL  73
              + +  GE+ LK+L
Sbjct  119  LGLSKQSGED-LKQL  132



Lambda      K        H        a         alpha
   0.325    0.140    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 48555


  Database: 3618e50c8f5e08f1740b1fbd74df4f6c.SwissProt.fasta
    Posted date:  May 20, 2024  11:55 PM
  Number of letters in database: 885
  Number of sequences in database:  6



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40