Comparative Genomics

ACIAD1559 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 64f14e8665579c928c125b37e2af4413.TrEMBL.fasta
           19 sequences; 2,593 total letters



Query= ACIAD1559

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FC02 Putative transcriptional regulator (MarR family) [Acinetob...  169     1e-60
A0A7G2SE70 MarR family transcriptional regulator [Acinetobacter sp]   169     1e-60
A0A2U3N3U4 Organic hydroperoxide resistance transcriptional regul...  117     2e-39
N8ZNZ8 Homoprotocatechuate degradation operon regulator, HpaR [Ac...  115     2e-38
A0A241ZIZ7 Homoprotocatechuate degradation operon regulator HpaR ...  114     3e-38
N9JK28 Homoprotocatechuate degradation operon regulator, HpaR [Ac...  114     3e-38
A0A836M1E6 Homoprotocatechuate degradation operon regulator, HpaR...  114     3e-38
A0A4Q4GPX4 Homoprotocatechuate degradation operon regulator HpaR ...  114     3e-38
K9AVR5 Homoprotocatechuate degradation operon regulator, HpaR [Ac...  114     7e-38
A0A427QVD5 Homoprotocatechuate degradation operon regulator HpaR ...  114     7e-38
A0A0E1FT52 Homoprotocatechuate degradation operon regulator HpaR ...  114     7e-38
A0A241WGN0 Homoprotocatechuate degradation operon regulator HpaR ...  107     4e-35
N8WW90 Homoprotocatechuate degradation operon regulator, HpaR [Ac...  107     4e-35
A0A072CUH4 Homoprotocatechuate degradative operon repressor [Acin...  107     4e-35
A0A6A1RU73 Homoprotocatechuate degradation operon regulator HpaR ...  106     6e-35
A0A371YVS3 Homoprotocatechuate degradation operon regulator HpaR ...  106     7e-35
Q7DD70 Transcriptional regulator, MarR family [Neisseria meningit...  63.5    5e-18
O50574 Hypothetical 16.1 kDa transcriptional regulator [Alkalihal...  37.4    5e-08
Q96ZY1 MarR family transcriptional regulator [Sulfurisphaera toko...  35.8    2e-07


>Q6FC02 Putative transcriptional regulator (MarR family) [Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=87

 Score = 169 bits (429),  Expect = 1e-60
 Identities = 86/87 (99%), Positives = 87/87 (100%), Gaps = 0/87 (0%)

Query  1   LAERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR  60
           +AERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR
Sbjct  1   MAERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR  60

Query  61  IQELYGEEKLKELIEMLKDFEKVRLSD  87
           IQELYGEEKLKELIEMLKDFEKVRLSD
Sbjct  61  IQELYGEEKLKELIEMLKDFEKVRLSD  87


>A0A7G2SE70 MarR family transcriptional regulator [Acinetobacter 
sp]
Length=87

 Score = 169 bits (429),  Expect = 1e-60
 Identities = 86/87 (99%), Positives = 87/87 (100%), Gaps = 0/87 (0%)

Query  1   LAERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR  60
           +AERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR
Sbjct  1   MAERACILKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSYAR  60

Query  61  IQELYGEEKLKELIEMLKDFEKVRLSD  87
           IQELYGEEKLKELIEMLKDFEKVRLSD
Sbjct  61  IQELYGEEKLKELIEMLKDFEKVRLSD  87


>A0A2U3N3U4 Organic hydroperoxide resistance transcriptional regulator 
[Acinetobacter stercoris]
Length=141

 Score = 117 bits (294),  Expect = 2e-39
 Identities = 59/88 (67%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACILKPSLTGILNRM  QNL+ KRKD+QDQRI+LI L++EG N FE QAVKME SY
Sbjct  54   LADLACILKPSLTGILNRMIDQNLIQKRKDDQDQRINLITLTDEGKNRFEIQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+++L+E+LKD  +V+++
Sbjct  114  KKIQEQYGEEKMQQLMELLKDLSRVKIN  141


>N8ZNZ8 Homoprotocatechuate degradation operon regulator, HpaR 
[Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824]
Length=141

 Score = 115 bits (287),  Expect = 2e-38
 Identities = 61/87 (70%), Positives = 72/87 (83%), Gaps = 2/87 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACILKPSLTGILNRM  QNL+ KRKDEQDQRI+LI L+EEG   FE QAVKME SY
Sbjct  54   LADLACILKPSLTGILNRMIDQNLIQKRKDEQDQRINLITLTEEGKKLFEIQAVKMEISY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRL  85
             +IQE YG EKL++L+++LKD  KV+L
Sbjct  114  KKIQEQYGAEKLQDLLDLLKDLSKVKL  140


 Score = 15.4 bits (28),  Expect = 3.1
 Identities = 14/67 (21%), Positives = 29/67 (43%), Gaps = 23/67 (34%)

Query  8   LKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFE---HQAVKMEKSYARIQEL  64
           ++PSLT                    ++L++  E  ++HF    ++    E+ +  I+ L
Sbjct  4   IRPSLT--------------------LALLQAREATMSHFRPALNEIGLTEQQWRVIRIL  43

Query  65  YGEEKLK  71
           Y  E+L+
Sbjct  44  YQHEELE  50


>A0A241ZIZ7 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter baumannii]
Length=141

 Score = 114 bits (286),  Expect = 3e-38
 Identities = 60/88 (68%), Positives = 71/88 (81%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K+L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKQLLELLKDLSKIKLN  141


>N9JK28 Homoprotocatechuate degradation operon regulator, HpaR 
[Acinetobacter baumannii NIPH 80]
Length=141

 Score = 114 bits (286),  Expect = 3e-38
 Identities = 60/88 (68%), Positives = 71/88 (81%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K+L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKQLLELLKDLSKIKLN  141


>A0A836M1E6 Homoprotocatechuate degradation operon regulator, 
HpaR [Acinetobacter baumannii 1499986]
Length=141

 Score = 114 bits (286),  Expect = 3e-38
 Identities = 60/88 (68%), Positives = 71/88 (81%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K+L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKQLLELLKDLSKIKLN  141


>A0A4Q4GPX4 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter baumannii]
Length=141

 Score = 114 bits (286),  Expect = 3e-38
 Identities = 60/88 (68%), Positives = 71/88 (81%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K+L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKQLLELLKDLSKIKLN  141


>K9AVR5 Homoprotocatechuate degradation operon regulator, HpaR 
[Acinetobacter sp. WC-323]
Length=141

 Score = 114 bits (284),  Expect = 7e-38
 Identities = 58/87 (67%), Positives = 70/87 (80%), Gaps = 2/87 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA  ACILKPSLTGILNRM  QNL+ KRKDE DQRISLIRL+E G   FE QA++ME SY
Sbjct  54   LAVLACILKPSLTGILNRMVEQNLIQKRKDEADQRISLIRLTENGYKCFEAQAIRMESSY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRL  85
             +IQE YGEEK+ EL+++LKD  +++L
Sbjct  114  TKIQEQYGEEKMNELLKLLKDLSRIKL  140


>A0A427QVD5 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter sp. FDAARGOS_558]
Length=141

 Score = 114 bits (284),  Expect = 7e-38
 Identities = 60/88 (68%), Positives = 70/88 (80%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKHLLELLKDLSKIKLN  141


>A0A0E1FT52 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter baumannii]
Length=141

 Score = 114 bits (284),  Expect = 7e-38
 Identities = 60/88 (68%), Positives = 70/88 (80%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE ACILKPSLTGILNRM  Q L+ KRKD  DQRISLI L+E GL  F+ QAVKME SY
Sbjct  54   LAELACILKPSLTGILNRMVEQKLIQKRKDYDDQRISLISLTESGLECFKTQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE YGEEK+K L+E+LKD  K++L+
Sbjct  114  QKIQEQYGEEKMKHLLELLKDLSKIKLN  141


>A0A241WGN0 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter sp. ANC 3832]
Length=141

 Score = 107 bits (266),  Expect = 4e-35
 Identities = 57/88 (65%), Positives = 69/88 (78%), Gaps = 2/88 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACILKPSLTGILNRM  Q L+ KRKD  DQRI+LI L+E+G   FE QAVKME SY
Sbjct  54   LADLACILKPSLTGILNRMIDQGLIQKRKDNNDQRINLITLTEQGKQCFEIQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRLS  86
             +IQE +G EK ++L+E+LKD  KV+LS
Sbjct  114  KKIQEQFGLEKTRQLMELLKDLSKVKLS  141


 Score = 16.5 bits (31),  Expect = 1.2
 Identities = 14/67 (21%), Positives = 29/67 (43%), Gaps = 23/67 (34%)

Query  8   LKPSLTGILNRMQNLVIKRKDEQDQRISLIRLSEEGLNHFE---HQAVKMEKSYARIQEL  64
           ++PSLT                    ++L++  E  + HF    ++A   E+ +  ++ L
Sbjct  4   IRPSLT--------------------LALLQAREATMTHFRPALNEAGLTEQQWRIVRIL  43

Query  65  YGEEKLK  71
           Y  E+L+
Sbjct  44  YQHEELE  50


>N8WW90 Homoprotocatechuate degradation operon regulator, HpaR 
[Acinetobacter guillouiae NIPH 991]
Length=143

 Score = 107 bits (266),  Expect = 4e-35
 Identities = 54/86 (63%), Positives = 69/86 (80%), Gaps = 2/86 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACIL+PSLTGILNRM  QNL+ KRKD  DQR+SLI+LS+EG  +FE QAVKME+SY
Sbjct  56   LADLACILRPSLTGILNRMLDQNLIKKRKDLHDQRVSLIQLSDEGKRYFETQAVKMEESY  115

Query  59   ARIQELYGEEKLKELIEMLKDFEKVR  84
              IQ  YG EK+++L+E+L D  K++
Sbjct  116  TDIQTQYGAEKIQQLMELLNDLSKIK  141


>A0A072CUH4 Homoprotocatechuate degradative operon repressor [Acinetobacter 
sp. ETR1]
Length=143

 Score = 107 bits (266),  Expect = 4e-35
 Identities = 54/86 (63%), Positives = 69/86 (80%), Gaps = 2/86 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACIL+PSLTGILNRM  QNL+ KRKD  DQR+SLI+LS+EG  +FE QAVKME+SY
Sbjct  56   LADLACILRPSLTGILNRMLDQNLIKKRKDLHDQRVSLIQLSDEGKRYFETQAVKMEESY  115

Query  59   ARIQELYGEEKLKELIEMLKDFEKVR  84
              IQ  YG EK+++L+E+L D  K++
Sbjct  116  TDIQTQYGAEKIQQLMELLNDLSKIK  141


>A0A6A1RU73 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter guillouiae]
Length=143

 Score = 106 bits (265),  Expect = 6e-35
 Identities = 54/86 (63%), Positives = 69/86 (80%), Gaps = 2/86 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACIL+PSLTGILNRM  QNL+ KRKD  DQR+SLI+LS+EG  +FE QAVKME+SY
Sbjct  56   LADLACILRPSLTGILNRMRDQNLIKKRKDLHDQRVSLIQLSDEGKRYFETQAVKMEESY  115

Query  59   ARIQELYGEEKLKELIEMLKDFEKVR  84
              IQ  YG EK+++L+E+L D  K++
Sbjct  116  TDIQTQYGAEKVQQLMELLNDLSKIK  141


>A0A371YVS3 Homoprotocatechuate degradation operon regulator HpaR 
[Acinetobacter sichuanensis]
Length=140

 Score = 106 bits (264),  Expect = 7e-35
 Identities = 55/87 (63%), Positives = 69/87 (79%), Gaps = 2/87 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA+ ACILKPSLTGILNRM  Q+L++KRKD  DQRI+LI L++EG   FE QAVKME SY
Sbjct  54   LADFACILKPSLTGILNRMIEQDLILKRKDVNDQRINLITLTDEGKACFEQQAVKMEASY  113

Query  59   ARIQELYGEEKLKELIEMLKDFEKVRL  85
             +IQE YG EK+++L+ ML D  K++L
Sbjct  114  KKIQEQYGVEKMQQLMTMLNDLSKIKL  140


>Q7DD70 Transcriptional regulator, MarR family [Neisseria meningitidis 
serogroup B (strain MC58)]
Length=146

 Score = 63.5 bits (153),  Expect = 5e-18
 Identities = 33/85 (39%), Positives = 54/85 (64%), Gaps = 2/85 (2%)

Query  1    LAERACILKPSLTGILNRMQN--LVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA +ACIL+PSLTGIL R++   LV++ K   DQR   ++L+ EG   +E    ++++ Y
Sbjct  56   LANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERY  115

Query  59   ARIQELYGEEKLKELIEMLKDFEKV  83
              I+E+ G EK+  L ++L +  K+
Sbjct  116  DAIEEVLGREKMLLLKDLLAELAKI  140


 Score = 15.8 bits (29),  Expect = 2.3
 Identities = 9/30 (30%), Positives = 17/30 (57%), Gaps = 1/30 (3%)

Query  23  VIKRKDEQDQRISLIR-LSEEGLNHFEHQA  51
           ++ + +  DQ+  +IR L+E G   F+  A
Sbjct  28  ILNQANITDQQWRIIRLLAENGTLDFQDLA  57


>O50574 Hypothetical 16.1 kDa transcriptional regulator [Alkalihalophilus 
pseudofirmus]
Length=148

 Score = 37.4 bits (85),  Expect = 5e-08
 Identities = 20/85 (24%), Positives = 44/85 (52%), Gaps = 2/85 (2%)

Query  1    LAERACILKPSLTGILNRM--QNLVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LAE   +   ++T +++R+   + VI+ +DE+D+R   +R+S+EG    +    K     
Sbjct  58   LAEELQVKPSAITAMVDRLLKNDFVIRERDEKDRRAVYVRISDEGRRALKSSVKKRNIIM  117

Query  59   ARIQELYGEEKLKELIEMLKDFEKV  83
             +      EE++++L  +L+    +
Sbjct  118  EKYMSKLTEEEMEQLTTVLEKLTSI  142


>Q96ZY1 MarR family transcriptional regulator [Sulfurisphaera 
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)]
Length=146

 Score = 35.8 bits (81),  Expect = 2e-07
 Identities = 23/85 (27%), Positives = 50/85 (59%), Gaps = 5/85 (6%)

Query  1    LAERACILKPSLTGILNRMQN--LVIKRKDEQDQRISLIRLSEEGLNHFEHQAVKMEKSY  58
            LA R  + + ++T  +++++   LV++ +D +D+R  LI ++E+GL  F ++ +++ K  
Sbjct  56   LANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF-NKGIEIYKKL  114

Query  59   ARIQELYGEEKLKELIEMLKDFEKV  83
            A   E+ G+    E+I +L    K+
Sbjct  115  A--NEVTGDLSEDEVILVLDKISKI  137



Lambda      K        H        a         alpha
   0.325    0.140    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 117334


  Database: 64f14e8665579c928c125b37e2af4413.TrEMBL.fasta
    Posted date:  Jun 3, 2024  6:07 AM
  Number of letters in database: 2,593
  Number of sequences in database:  19



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40