BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9d0922750ee44dafe2e0d71783e63f5b.SwissProt.fasta
           4 sequences; 897 total letters



Query= ACIAD1591

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P9WMH3 CRP-like cAMP-activated global transcriptional regulator [...  56.6    1e-13
P9WMH2 CRP-like cAMP-activated global transcriptional regulator [...  56.6    1e-13
Q79VI7 CRP-like cAMP-activated global transcriptional regulator [...  53.9    9e-13
P29283 Global nitrogen regulator [Synechococcus elongatus (strain...  34.7    3e-06


>P9WMH3 CRP-like cAMP-activated global transcriptional regulator 
[Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)]
Length=224

 Score = 56.6 bits (135),  Expect = 1e-13
 Identities = 35/187 (19%), Positives = 84/187 (45%), Gaps = 0/187 (0%)

Query  74   QGQVLYSRNQDCREIIIVLSGVLKLGWNSYDGKYLIHRFIPTGALLNIVYLISESALEHE  133
            +G  +++  +    + I++SG +K+G  + DG+  +   +    +   + +         
Sbjct  33   RGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSS  92

Query  134  YVAHEATVIATIPEHIFKHTIQHNSRMLYQVLKLVCQRTRLLDNDIYHTSTQPLKVQIAR  193
                      ++     +  I     +  Q+L+++ +R R  +N++       +  ++A+
Sbjct  93   ATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAK  152

Query  194  QLIYLIEFFSTQTQKGIEVLLKLSQENLAELLKISRQSIRKEIQWFVEEGIIETKYNHIS  253
            QL+ L + F TQ    + V   L+QE +A+L+  SR+++ K +  F   G I  +   + 
Sbjct  153  QLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL  212

Query  254  VKDIDKL  260
            + D ++L
Sbjct  213  ISDSERL  219


>P9WMH2 CRP-like cAMP-activated global transcriptional regulator 
[Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)]
Length=224

 Score = 56.6 bits (135),  Expect = 1e-13
 Identities = 35/187 (19%), Positives = 84/187 (45%), Gaps = 0/187 (0%)

Query  74   QGQVLYSRNQDCREIIIVLSGVLKLGWNSYDGKYLIHRFIPTGALLNIVYLISESALEHE  133
            +G  +++  +    + I++SG +K+G  + DG+  +   +    +   + +         
Sbjct  33   RGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSS  92

Query  134  YVAHEATVIATIPEHIFKHTIQHNSRMLYQVLKLVCQRTRLLDNDIYHTSTQPLKVQIAR  193
                      ++     +  I     +  Q+L+++ +R R  +N++       +  ++A+
Sbjct  93   ATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAK  152

Query  194  QLIYLIEFFSTQTQKGIEVLLKLSQENLAELLKISRQSIRKEIQWFVEEGIIETKYNHIS  253
            QL+ L + F TQ    + V   L+QE +A+L+  SR+++ K +  F   G I  +   + 
Sbjct  153  QLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL  212

Query  254  VKDIDKL  260
            + D ++L
Sbjct  213  ISDSERL  219


>Q79VI7 CRP-like cAMP-activated global transcriptional regulator 
[Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 
/ BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)]
Length=227

 Score = 53.9 bits (128),  Expect = 9e-13
 Identities = 38/218 (17%), Positives = 91/218 (42%), Gaps = 0/218 (0%)

Query  43   EQMLSECEFMDACSLEEKQKLFNEIKIKHLYQGQVLYSRNQDCREIIIVLSGVLKLGWNS  102
            +++LS               L  +++     +G  ++   +    + I+ SG +KL  ++
Sbjct  5    QEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHA  64

Query  103  YDGKYLIHRFIPTGALLNIVYLISESALEHEYVAHEATVIATIPEHIFKHTIQHNSRMLY  162
             DG+  +   +    +   + +          V       AT+   + ++ +  +  +  
Sbjct  65   PDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAE  124

Query  163  QVLKLVCQRTRLLDNDIYHTSTQPLKVQIARQLIYLIEFFSTQTQKGIEVLLKLSQENLA  222
            Q+L+++ +R R  +  +       +  ++A+ L+ L   F TQ    + V   L+QE +A
Sbjct  125  QLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIA  184

Query  223  ELLKISRQSIRKEIQWFVEEGIIETKYNHISVKDIDKL  260
            +L+  SR+++ K +  F   G I  +   + + D + L
Sbjct  185  QLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHL  222


>P29283 Global nitrogen regulator [Synechococcus elongatus (strain 
ATCC 33912 / PCC 7942 / FACHB-805)]
Length=222

 Score = 34.7 bits (78),  Expect = 3e-06
 Identities = 30/190 (16%), Positives = 80/190 (42%), Gaps = 2/190 (1%)

Query  67   IKIKHLYQGQVLYSRNQDCREIIIVLSGVLKLGWNSYDGKYLIHRFIPTGALLNIVYLIS  126
            ++I+   +G+ ++        + +++ G +KL      G+ +    +   ++  ++ L++
Sbjct  22   LQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLT  81

Query  127  ESALEHEY--VAHEATVIATIPEHIFKHTIQHNSRMLYQVLKLVCQRTRLLDNDIYHTST  184
                +  Y  VA     + ++P    +  +     +   +L+ +  R    +  I   + 
Sbjct  82   GQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAH  141

Query  185  QPLKVQIARQLIYLIEFFSTQTQKGIEVLLKLSQENLAELLKISRQSIRKEIQWFVEEGI  244
            + +  ++   L+ L   F   +  GI + LKLS + +AE +  +R ++ + +    E  +
Sbjct  142  RDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKL  201

Query  245  IETKYNHISV  254
            I      I+V
Sbjct  202  IAIHKKRITV  211



Lambda      K        H        a         alpha
   0.325    0.139    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 178245


  Database: 9d0922750ee44dafe2e0d71783e63f5b.SwissProt.fasta
    Posted date:  May 20, 2024  4:40 PM
  Number of letters in database: 897
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40