BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4de2014df178061bb73e2b020b7d059c.SwissProt.fasta
1 sequences; 358 total letters
Query= ACIAD1653
Length=181
Score E
Sequences producing significant alignments: (Bits) Value
Q5WGS7 3-dehydroquinate synthase [Shouchella clausii (strain KSM-... 33.5 2e-06
>Q5WGS7 3-dehydroquinate synthase [Shouchella clausii (strain
KSM-K16)]
Length=358
Score = 33.5 bits (75), Expect = 2e-06
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 0/50 (0%)
Query 131 IYDKDFTQNFPENRVLFIHKKILQLGITTEKEWIKWLDEVIPALKSFETD 180
++D + PE+ +I++LG + ++ WL E +PAL S + D
Sbjct 160 LFDTELLATLPEHEWRSGFAEIVKLGFIADASFLAWLRETVPALTSIKAD 209
Lambda K H a alpha
0.322 0.136 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 52438
Database: 4de2014df178061bb73e2b020b7d059c.SwissProt.fasta
Posted date: May 20, 2024 11:54 PM
Number of letters in database: 358
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40