BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c2d007c728d5ead0fa8b6d98cdf7f1e8.SwissProt.fasta
14 sequences; 4,287 total letters
Query= ACIAD1675
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 187 4e-61
P44876 Uncharacterized HTH-type transcriptional regulator HI_0775... 106 4e-30
P20668 Transcriptional dual regulator GltC [Bacillus subtilis (st... 105 6e-30
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat... 101 3e-28
Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis... 99.8 9e-28
O68014 HTH-type transcriptional regulator BenM [Acinetobacter bay... 96.7 1e-26
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 93.2 2e-25
P94387 Uncharacterized HTH-type transcriptional regulator YcgK [B... 93.6 2e-25
Q85G62 Probable RuBisCO transcriptional regulator [Cyanidioschyzo... 91.7 8e-25
P71318 Hydrogen peroxide-inducible genes activator [Pectobacteriu... 90.9 1e-24
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 90.1 3e-24
P0ACQ4 Hydrogen peroxide-inducible genes activator [Escherichia c... 88.6 1e-23
B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia ceno... 85.1 2e-22
P25544 RuBisCO operon transcriptional regulator [Allochromatium v... 84.7 2e-22
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 187 bits (474), Expect = 4e-61
Identities = 100/295 (34%), Positives = 168/295 (57%), Gaps = 6/295 (2%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
MDI+ L F+++ + +SFT A++ L+V+QPT+SK I LEEELG LF + R+VE
Sbjct 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNG----RQVE 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPL-GSVLLTSLIAIFHKQ 119
LT G +Y A I+ + + L+DI +K+G + +GLPP+ GS ++ F +
Sbjct 57 LTDAGHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFREN 116
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGIL-LNHIHPLLAVIPIIDSPLCLLSPRHSRWK 178
+PN+ + +E GS +++ + ++D+G++ L + I+ L L+ R
Sbjct 117 YPNVTFQLVEDGSIKVQEGVGDGSLDIGVVVLPANEDIFHSFTIVKETLMLVVHPSHRLA 176
Query 179 HAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESAMG 238
K L +LKDE F+ + + F L++ I+ GF PHI+ ++SQWDFI+++V + +G
Sbjct 177 DEKECQLRELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVSANLG 236
Query 239 IALLPQIYCEQLDQDKFSITPLINTPLRWTLSMAWNTSVPMTAATRAWLAIVEQY 293
I LLP+ C LD +K + PL++ + W L++ W ++ A RAWL + Y
Sbjct 237 IGLLPERICRGLDPEKVKVIPLVDPVIPWHLAIIWRKDRYLSFAARAWLEHTKSY 291
>P44876 Uncharacterized HTH-type transcriptional regulator HI_0775
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=315
Score = 106 bits (264), Expect = 4e-30
Identities = 74/280 (26%), Positives = 141/280 (50%), Gaps = 16/280 (6%)
Query 1 MDIKSLKIFVQIIQSQ-SFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREV 59
MDI+ L+ FV I+ + + + A++ L+V+QP +S I E +FK+ + +
Sbjct 16 MDIRHLRYFVSIVDNDFNLSRASQNLYVSQPALSMMITEFENRENIQIFKRASG---KII 72
Query 60 ELTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLG-SVLLTSLIAIFHK 118
LT+ G+ Y+ A ++ + L K K+G +T+G+PPL S + +S++
Sbjct 73 GLTFAGENYYRDAKEVIKRYNDMRTNLYKSKDCKKGTITIGIPPLVLSAVFSSVLPHLIL 132
Query 119 QHPNIELKFLEVGSNTIEQAILAKTIDVGILLNHIHP------LLAVIPIIDSPLCL-LS 171
++P+I E+G+ ++ +L +D+ +LL +P ++ I I S L L LS
Sbjct 133 KNPDINFIIKEIGAYALKSELLLDKVDLAVLL---YPERISKNIIDSIEIHSSELALFLS 189
Query 172 PRHSRWKHAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAK 231
P+H K + IT DL ++ ++D +F ++H + +A P IV SS WDF+
Sbjct 190 PKHVLAKKQQ-ITWADLHQQKMAIFDQTFMIHHHLKEAFERNNCYPDIVLDSSCWDFLLS 248
Query 232 LVESAMGIALLPQIYCEQLDQDKFSITPLINTPLRWTLSM 271
V++ + + + +L K + I +P+ W +++
Sbjct 249 AVKTNKELLTILPLPMAELYHSKEFLCRKIESPVPWKVTL 288
>P20668 Transcriptional dual regulator GltC [Bacillus subtilis
(strain 168)]
Length=300
Score = 105 bits (262), Expect = 6e-30
Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 9/248 (4%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+++ L+ F+++ + + + AA+ L V Q +S+ IA LEEEL TLF++ R ++
Sbjct 1 MELRQLRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFER----EGRNIK 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPP-LGSVLLTSLIAIFHKQ 119
LT G++ H + E +D+ RG + +G P L S LL ++I+ F ++
Sbjct 57 LTPIGKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEE 116
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGIL---LNHIHPLLAVIPIIDSPLCLLSPRHSR 176
+P++E + + +A+ + ID+ +L + + I + L+ H
Sbjct 117 YPHVEFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPL 176
Query 177 WKHAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESA 236
K K + L DL+++QF+L+ + F L + I GF P + + D I LV +
Sbjct 177 AKQ-KTVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAG 235
Query 237 MGIALLPQ 244
MG+ LLP+
Sbjct 236 MGVTLLPE 243
>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442
/ H16 / Stanier 337)]
Length=317
Score = 101 bits (251), Expect = 3e-28
Identities = 85/299 (28%), Positives = 140/299 (47%), Gaps = 8/299 (3%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
+ ++ L+IFV + + SF AAE+L +TQP VS + LE +G LF++ K ++
Sbjct 8 LTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERV----KGQLT 63
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSVLLTSLIAIFHKQH 120
LT G ++ HA IL E K E L +K +++G +T+GL L+A F H
Sbjct 64 LTEPGDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGLISTSKYFAPKLLAGFTALH 123
Query 121 PNIELKFLEVGSNTIEQAILAKTIDVGILLNHIHPLLAVI-PIIDSPLCLL-SPRHSRWK 178
P ++L+ E T+ + + ID+ ++ L AV PI P L+ SPRH
Sbjct 124 PGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPRHP-LH 182
Query 179 HAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESAMG 238
AKG L +L+ E FLL + + F P V + I + V + MG
Sbjct 183 DAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMG 242
Query 239 IALLP-QIYCEQLDQDKFSITPLINTPLRWTLSMAWNTSVPMTAATRAWLAIVEQYRHE 296
I+LL +L + + + TP+ +A +S ++ A+ + A + ++ E
Sbjct 243 ISLLSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLLEHTAE 301
>Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis
(strain 168)]
Length=302
Score = 99.8 bits (247), Expect = 9e-28
Identities = 71/249 (29%), Positives = 125/249 (50%), Gaps = 12/249 (5%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+++ L+ F+ + + F AA +L +TQP +S+ I LEEE+G TL K+ KR VE
Sbjct 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKR----TKRFVE 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSV---LLTSLIAIFH 117
LT G+ H L + + E+ ++G L +G +GS L ++ +
Sbjct 57 LTAAGEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGF--VGSATYEFLPPIVREYR 114
Query 118 KQHPNIELKFLEVGSNTIEQAILAKTIDVGILLNHI-HPLLAVIPIIDSPLCLLSPRHSR 176
K+ P+++++ E+ S+ ++ +L ID+GIL + H L + SP L P+
Sbjct 115 KKFPSVKIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHP 174
Query 177 WKHAKGITLNDLKDEQFLLYDDSF--TLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVE 234
+ IT+ DL+DE + TL IQ GF P+IV +++++ + LV
Sbjct 175 LTSKESITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVS 234
Query 235 SAMGIALLP 243
+ +G+ +P
Sbjct 235 AGIGMTFVP 243
>O68014 HTH-type transcriptional regulator BenM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=304
Score = 96.7 bits (239), Expect = 1e-26
Identities = 71/251 (28%), Positives = 127/251 (51%), Gaps = 15/251 (6%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+++ L+ FV +++ QSFT AA++L + QP +S+ I LEEELG L ++G R V+
Sbjct 1 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERG----SRPVK 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSV---LLTSLIAIFH 117
T G YQ+A+ +L + +++ K + + T+ + +GS+ LL +I ++
Sbjct 57 TTPEGHFFYQYAIKLL---SNVDQMVSMTKRIASVEKTIRIGFVGSLLFGLLPRIIHLYR 113
Query 118 KQHPNIELKFLEVGSNTIEQAILAKTIDVGILLNHIHPLLAVIPIIDSPLCLLSPRHS-- 175
+ HPN+ ++ E+G+ +A+ ID G I ++ + +++ S
Sbjct 114 QAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKRTLLRNERLMVAVHASHP 173
Query 176 -RWKHAKGITLNDLKDEQFLLYDDSFTLNHL--IIQAANLEGFEPHIVCKSSQWDFIAKL 232
KG+ LNDL DE+ LLY S N ++ + G EP + + + L
Sbjct 174 LNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGL 233
Query 233 VESAMGIALLP 243
V + GI+L+P
Sbjct 234 VAAGEGISLVP 244
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 93.2 bits (230), Expect = 2e-25
Identities = 81/296 (27%), Positives = 141/296 (48%), Gaps = 11/296 (4%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+++ L+ FV + Q+ +FT AAE+L +QP++S I LE +G L + KR+V
Sbjct 1 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRD----KRKVA 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSV-LLTSLIAIFHKQ 119
LT G+ Q AL IL++ + I R +LT+G P V LL ++ +F +
Sbjct 57 LTAAGECFLQDALAILEQAENAKLRARKIVQEDR-QLTIGFVPSAEVNLLPKVLPMFRLR 115
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGILLNHIH-PLLAVIPIIDSPLCLLSPRHSRWK 178
P+ ++ + + + E+ I +DVG++ + ++ P + + + D PL ++ P
Sbjct 116 QPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLVVVLPVDHPLA 175
Query 179 HAKGITLNDLKDEQFLLYDD--SFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESA 236
H K IT L F+ D S +L ++ E +P+IV ++ LV
Sbjct 176 HEKEITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMG 235
Query 237 MGIALLPQIYCEQLDQDKFSITPLINTPLRWTLSMAWNTSVPMTAATRAWLAIVEQ 292
+G+ L+P Y + + P+ L MAW M A R ++AIV++
Sbjct 236 LGVTLIPG-YMNNFNTGQVVFRPIAGNVPSIALLMAWKKG-EMKPALRDFIAIVQE 289
>P94387 Uncharacterized HTH-type transcriptional regulator YcgK
[Bacillus subtilis (strain 168)]
Length=324
Score = 93.6 bits (231), Expect = 2e-25
Identities = 66/265 (25%), Positives = 127/265 (48%), Gaps = 24/265 (9%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
MDIK ++ +I + QSFT AAE L + QP++S+ I LE ELG TLF + V
Sbjct 1 MDIKVMEYAAEIARRQSFTKAAEHLHIAQPSLSQQIKKLEAELGLTLFHRSHG----SVT 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPL-GSVLLTSLIAIFHKQ 119
LT G++ + A +I+ + + + + KL++G+P + G L L+ F +
Sbjct 57 LTPHGRRFIEKAEDIIRSRDDLLREMQERSQGIGHKLSIGIPAVTGRYLFPPLLKQFLAR 116
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGILLNHIH-PLLAVIPIIDSPLCLLSPRH-SRW 177
+P++E++ +E ++E+ +D+ +L I L++ P++ P+ L P+ RW
Sbjct 117 YPHVEVQLVEKDPVSLEKMTAKGEVDLSVLSLPIEDERLSITPLLTEPVVLAVPKEKQRW 176
Query 178 KHAKGITLND-----------------LKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIV 220
+ + L + +++ F+L + F ++ GF+P+
Sbjct 177 MPPELVALIEKALEEDEGRQPCVPIDMVRNVPFILLKEGFGFRRTVLDLCAESGFKPNAA 236
Query 221 CKSSQWDFIAKLVESAMGIALLPQI 245
K+S + LV + +G+ + P +
Sbjct 237 FKTSHIETAQSLVANGLGVTMAPNM 261
Score = 20.4 bits (41), Expect = 0.66
Identities = 6/16 (38%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
Query 250 LDQDKFSITPLINTPL 265
++ ++ SITPL+ P+
Sbjct 150 IEDERLSITPLLTEPV 165
>Q85G62 Probable RuBisCO transcriptional regulator [Cyanidioschyzon
merolae (strain NIES-3377 / 10D)]
Length=303
Score = 91.7 bits (226), Expect = 8e-25
Identities = 62/219 (28%), Positives = 109/219 (50%), Gaps = 9/219 (4%)
Query 3 IKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVELT 62
+ L+IF I+ SF AA+ L+++QP VS I LE++L LF + R+ +LT
Sbjct 8 LDQLRIFQAIVVEGSFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSH----RKAKLT 63
Query 63 YTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGL-PPLGSVLLTSLIAIFHKQHP 121
GQ +++A IL ++ L+D+ HL+ G L +G +G+ L+ LI +F +++P
Sbjct 64 EAGQVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYP 123
Query 122 NIELKFLEVGSNTIEQAILAKTIDV----GILLNHIHPLLAVIPIIDSPLCLLSPRHSRW 177
+I ++ + I ++ IDV G + + PLL++ P + L L+ P +
Sbjct 124 HICVQLQVHSTRRIAWSVAKGHIDVAVIGGAIPTELIPLLSIQPFAEDELTLIVPPDHPF 183
Query 178 KHAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFE 216
I DL +F+ D T+ +I Q + G +
Sbjct 184 ARLSKIQKEDLYRLRFVSLDRHSTIRKVIDQILHQNGID 222
>P71318 Hydrogen peroxide-inducible genes activator [Pectobacterium
carotovorum subsp. carotovorum]
Length=302
Score = 90.9 bits (224), Expect = 1e-24
Identities = 66/282 (23%), Positives = 129/282 (46%), Gaps = 7/282 (2%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+I+ L+ V + + + F AA+ V+QPT+S I LE+ELG L ++ R+V
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER----TSRKVL 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGL-PPLGSVLLTSLIAIFHKQ 119
T G + + A +L E K + E+ G L +GL P +G LL +I + H+
Sbjct 57 FTQAGLLLVEQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPQIIPMLHRT 116
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGIL-LNHIHPLLAVIPIIDSPLCLLSPRHSRWK 178
P +E+ E ++ + + + +D IL + +P+ D P+ L + W
Sbjct 117 FPKLEMYLHEAQTHQLLAQLDSGKLDCAILAMVKESEAFIEVPLFDEPMKLAIYQDHPWA 176
Query 179 HAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESAMG 238
+ + + ++DL E+ L+ +D L + G + +++ + + +V + G
Sbjct 177 NRERVAMSDLAGEKLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSG 236
Query 239 IALLPQIYC-EQLDQDKFSITPLINTPLRWTLSMAWNTSVPM 279
I LLP + + ++D P + T+++ + P+
Sbjct 237 ITLLPALSVPRERERDGVCYLPCYKPEPKRTIALVYRPGSPL 278
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 90.1 bits (222), Expect = 3e-24
Identities = 79/274 (29%), Positives = 128/274 (47%), Gaps = 25/274 (9%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+++ L+ FV +++ QS + AAE+L + QP +S+ I LEEELG LF++G R +
Sbjct 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERG----FRPAK 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSV---LLTSLIAIFH 117
+T G YQHA+ IL + + K + TL + + S+ LL +I +F
Sbjct 57 VTEAGMFFYQHAVQILTHTAQASSM---AKRIATVSQTLRIGYVSSLLYGLLPEIIYLFR 113
Query 118 KQHPNIELKFLEVGSNTIEQAILAKTIDVGI-LLNHIHPLLAVIPIIDSPLCLLSPRHSR 176
+Q+P I ++ +E G+ A+ ID+G L P + I + L L +H
Sbjct 114 QQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIVLHKEQLKLAIHKHHH 173
Query 177 WKH--AKGITLNDLKDEQFLLYDDSFTLNH-LIIQAANLE-GFEPHIVCKSSQWDFIAKL 232
A G+ L+ + DE LLY S N IQ+ E G P + + + L
Sbjct 174 LNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGL 233
Query 233 VESAMGIALLPQ----------IYCEQLDQDKFS 256
V + G+ ++P +Y LD D +S
Sbjct 234 VAAGEGVCIVPASAMDIGVKNLLYIPILDDDAYS 267
>P0ACQ4 Hydrogen peroxide-inducible genes activator [Escherichia
coli (strain K12)]
Length=305
Score = 88.6 bits (218), Expect = 1e-23
Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 7/282 (2%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
M+I+ L+ V + + + F AA+ V+QPT+S I LE+ELG L ++ R+V
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER----TSRKVL 56
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGL-PPLGSVLLTSLIAIFHKQ 119
T G + A +L E K + E+ G L +GL P +G LL +I + H+
Sbjct 57 FTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQT 116
Query 120 HPNIELKFLEVGSNTIEQAILAKTIDVGIL-LNHIHPLLAVIPIIDSPLCLLSPRHSRWK 178
P +E+ E ++ + + + +D IL L +P+ D P+ L W
Sbjct 117 FPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPLFDEPMLLAIYEDHPWA 176
Query 179 HAKGITLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESAMG 238
+ + + + DL E+ L+ +D L + G + +++ + + +V + G
Sbjct 177 NRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSG 236
Query 239 IALLPQIYC-EQLDQDKFSITPLINTPLRWTLSMAWNTSVPM 279
I LLP + + +D P I R T+ + + P+
Sbjct 237 ITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGSPL 278
>B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC
13227 / J2315 / CF5610)]
Length=313
Score = 85.1 bits (209), Expect = 2e-22
Identities = 70/242 (29%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Query 9 FVQIIQSQSFTL--AAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVELTYTGQ 66
FV+ Q+F L AA+ L+ +QP VSKAI LE+ELG +F + KR LT G+
Sbjct 8 FVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEDELGVEIFTRHG---KRVRSLTEPGR 64
Query 67 QVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGS-VLLTSLIAIFHKQHPNIEL 125
+ IL E + + V D +G LT+ + L + IA F K+ P + L
Sbjct 65 IILASVERILQEVESLKRVGKDYAAQDQGNLTIAATHTQARYSLPAAIAEFKKRFPKVHL 124
Query 126 KFLEVGSNTIEQAILAKTIDVGILLNHI--HPLLAVIPIIDSPLCLLSPRHSRWKHAKGI 183
L+ + + ++ D+ I I + L +P + P K +
Sbjct 125 SILQGSPTQVAEMVIHDQADLAIATEAISDYKELVSLPCFQWHHAAVVPADHPLLERKPV 184
Query 184 TLNDLKDEQFLLYDDSFTLNHLIIQAANLEGFEPHIVCKSSQWDFIAKLVESAMGIALLP 243
TL+DL + YDD+F I A L G P IV ++ D I VE +G+ ++
Sbjct 185 TLDDLAQYPLITYDDAFAGRKKINHAFALRGLSPDIVLEAIDADVIKTYVELGLGVGIMA 244
Query 244 QI 245
I
Sbjct 245 DI 246
>P25544 RuBisCO operon transcriptional regulator [Allochromatium
vinosum]
Length=302
Score = 84.7 bits (208), Expect = 2e-22
Identities = 51/201 (25%), Positives = 110/201 (55%), Gaps = 9/201 (4%)
Query 1 MDIKSLKIFVQIIQSQSFTLAAEQLFVTQPTVSKAIAGLEEELGTTLFKKGEAGRKREVE 60
+ ++ L++F + + S+T AAE+L ++QP VS + LE+E+G +LF++ ++V
Sbjct 3 VSLRQLRVFEAVARHNSYTRAAEELHLSQPAVSMQVRQLEDEIGLSLFER----LGKQVV 58
Query 61 LTYTGQQVYQHALNILDEQKKIYEVLDDIKHLKRGKLTLGLPPLGSVLLTSLIAIFHKQH 120
LT G++V+ ++ I +++ EVL+ +K + RG L + + + L+AIF ++H
Sbjct 59 LTEAGREVFHYSRAIGQSLREMEEVLESLKGVSRGSLRIAVASTVNYFAPRLMAIFQQRH 118
Query 121 PNIELKFLEVGSNTIEQAILAKTIDVGILLNHIHPLLAVI---PIIDSPLCLLSPRHSRW 177
I L+ ++ Q + + ++D ++L + P + +D+PL +++P
Sbjct 119 SGIGLRLDVTNRESLVQMLDSNSVD--LVLMGVPPRNVEVEAEAFMDNPLVVIAPPDHPL 176
Query 178 KHAKGITLNDLKDEQFLLYDD 198
+ I+L L +E F++ ++
Sbjct 177 AGERAISLARLAEETFVMREE 197
Lambda K H a alpha
0.323 0.138 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 932535
Database: c2d007c728d5ead0fa8b6d98cdf7f1e8.SwissProt.fasta
Posted date: May 20, 2024 5:06 PM
Number of letters in database: 4,287
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
