BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9156fc53136808684d2f5a3040d5171f.SwissProt.fasta
11 sequences; 3,017 total letters
Query= ACIAD1688
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Q6XL52 HTH-type transcriptional regulator TsaQ1/TsaQ2 [Comamonas ... 151 7e-48
P76268 HTH-type transcriptional regulator KdgR [Escherichia coli ... 90.5 6e-25
P37728 HTH-type transcriptional regulator KdgR [Dickeya chrysanth... 84.0 2e-22
Q52154 Pca regulon regulatory protein [Pseudomonas putida] 83.6 3e-22
P77300 HTH-type transcriptional regulator XynR [Escherichia coli ... 80.9 2e-21
P42968 HTH-type transcriptional regulator KipR [Bacillus subtilis... 71.6 3e-18
Q43992 p-hydroxybenzoate hydroxylase transcriptional activator [A... 69.3 3e-17
P77569 DNA-binding transcriptional activator MhpR [Escherichia co... 68.9 4e-17
P37671 DNA-binding transcriptional repressor YiaJ [Escherichia co... 64.3 2e-15
P16528 Transcriptional repressor IclR [Escherichia coli (strain K... 61.6 1e-14
P17430 Acetate operon repressor [Salmonella typhimurium (strain L... 61.2 2e-14
>Q6XL52 HTH-type transcriptional regulator TsaQ1/TsaQ2 [Comamonas
testosteroni]
Length=278
Score = 151 bits (381), Expect = 7e-48
Identities = 85/251 (34%), Positives = 146/251 (58%), Gaps = 6/251 (2%)
Query 29 RENNPQFIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQM 88
+E+ + SLA+GLE+L CFS + ++LGNQ+L ++TGLPK T++R+T+TLV LGYL+
Sbjct 12 QESGTGLVHSLAKGLEILSCFS-EGELLGNQQLVELTGLPKATVSRLTSTLVKLGYLQVD 70
Query 89 PNSPKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVV 148
P S K + VL LG + L ++ A ME +S V + RDRL+++ L+V
Sbjct 71 PRSRKLAMGARVLGLGVSVQRKLGLQRIARPHMEALSQRFGLTVTMGTRDRLSVVLLEVC 130
Query 149 QTNSTMRRPI----GSTLPLHNSSMGRACLAATPKQERYFLLEAIQKREPENWIEIKEKL 204
+ S + + G+ +PL +++G A L +P ++R ++E ++K+ + W+E + ++
Sbjct 131 RPPSLAQLVVNFDAGTHMPLSQTALGLASLVNSPVKDREQVIEGLRKQLGDQWVEARNRI 190
Query 205 DIAFDQYAEYGYCLSLGEWQQGINSVAVPLMST-KHGLYVFNCGAPSYALSTEKLIEDIG 263
+ A ++ YGY +S + ++ VAV ++ + YVF+ PS + + D+G
Sbjct 191 ERAHQEHERYGYIVSQRSLGRDVSGVAVGMVPMGSNTPYVFHMAGPSNQMPLSLMRSDMG 250
Query 264 PRLKYMVNSIQ 274
P LK MV IQ
Sbjct 251 PALKQMVQDIQ 261
>P76268 HTH-type transcriptional regulator KdgR [Escherichia coli
(strain K12)]
Length=263
Score = 90.5 bits (223), Expect = 6e-25
Identities = 66/236 (28%), Positives = 117/236 (50%), Gaps = 7/236 (3%)
Query 30 ENNPQFIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMP 89
+ P ++S+ + +L+ + ++ G EL++ + K T+ R T+ +LGY+ Q
Sbjct 7 DKQPDSVSSVLKVFGILQALGEEREI-GITELSQRVMMSKSTVYRFLQTMKTLGYVAQEG 65
Query 90 NSPKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVVQ 149
S KY L L + LG AL N+ + +A M E+S + + L A D +++Y+ +
Sbjct 66 ESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKID 125
Query 150 T--NSTMRRPIGSTLPLHNSSMGRACLAATPKQERYFLLEAIQ-KREPENWIEIKEKLDI 206
+ N M IG PL+++++G+ LA + E +LE ++ KR E I E L
Sbjct 126 SMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLP 185
Query 207 AFDQYAEYGYCLSLGEWQQGINSVAVPLMSTKHGLYV--FNCGAPSYALSTEKLIE 260
DQ E GY E ++G+ +AVP+ + G+ + + P+ S E+L E
Sbjct 186 VLDQVREQGYGEDNEEQEEGLRCIAVPVFD-RFGVVIAGLSISFPTLRFSEERLQE 240
Score = 16.9 bits (32), Expect = 5.2
Identities = 11/30 (37%), Positives = 14/30 (47%), Gaps = 0/30 (0%)
Query 108 LSNLSIRTTAHRFMEEMSMYAQAPVALAAR 137
++ LSI RF EE A + AAR
Sbjct 221 IAGLSISFPTLRFSEERLQEYVAMLHTAAR 250
>P37728 HTH-type transcriptional regulator KdgR [Dickeya chrysanthemi]
Length=305
Score = 84.0 bits (206), Expect = 2e-22
Identities = 58/208 (28%), Positives = 105/208 (50%), Gaps = 4/208 (2%)
Query 30 ENNPQFIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMP 89
+ P ++S+ + +L+ + ++ G EL++ + K T+ R T+ SLGY+ Q
Sbjct 49 DKQPDSVSSVLKVFGILQALGEEREI-GITELSQRVMMSKSTVYRFLQTMKSLGYVAQEG 107
Query 90 NSPKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVVQ 149
S KY L L + LG AL N+ + +A M E+S + + L A D +++Y+ +
Sbjct 108 ESEKYSLTLKLFELGAKALQNVDLIRSADIQMRELSALTRETIHLGALDEDSIVYIHKID 167
Query 150 T--NSTMRRPIGSTLPLHNSSMGRACLAATPKQERYFLLEAIQ-KREPENWIEIKEKLDI 206
+ N M IG PLH++++G+ LA ++E +L ++ KR + I E+L
Sbjct 168 SMYNLRMYSRIGRRNPLHSTAIGKVLLAWRDREEVKEILSQVEFKRTTVHTIGSTEELLP 227
Query 207 AFDQYAEYGYCLSLGEWQQGINSVAVPL 234
D + GY E ++G+ +AVP+
Sbjct 228 QLDLVRQQGYGEDNEEQEEGLRCIAVPV 255
>Q52154 Pca regulon regulatory protein [Pseudomonas putida]
Length=291
Score = 83.6 bits (205), Expect = 3e-22
Identities = 59/207 (29%), Positives = 103/207 (50%), Gaps = 6/207 (3%)
Query 32 NPQFIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNS 91
+P F+ SLARGL +++ F + + L +++ T +P+ + R +TL+ LGY +
Sbjct 41 DPDFMTSLARGLAVIQAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLIKLGYATS--DG 98
Query 92 PKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYL---DVV 148
Y L VL+LG+A LS+ + +A +++ +S +A + ++LY+ V
Sbjct 99 RTYSLLPKVLTLGHAYLSSTPLAISAQPYLDRISDQLHEAANMATLEGDDILYIARSATV 158
Query 149 QTNSTMRRPIGSTLPLHNSSMGRACLAATPKQE-RYFLLEAIQKREPENWIEIKEKLDIA 207
+ ++ +G LP + +SMGR LAA R +L A K + E L
Sbjct 159 ERLISVDLSVGGRLPAYCTSMGRILLAAMDDTSLREYLGRADLKARTSRTLHDPESLFAC 218
Query 208 FDQYAEYGYCLSLGEWQQGINSVAVPL 234
Q G+C+ E +QG+ S+AVP+
Sbjct 219 IQQVRAQGWCVVDQELEQGLRSIAVPI 245
>P77300 HTH-type transcriptional regulator XynR [Escherichia coli
(strain K12)]
Length=252
Score = 80.9 bits (198), Expect = 2e-21
Identities = 58/202 (29%), Positives = 98/202 (49%), Gaps = 3/202 (1%)
Query 36 IASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNSPKYM 95
I S+ R L++L F+ Q L +++K+ GL K T+ + TL GY+ Q P + KY
Sbjct 4 IQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYR 63
Query 96 LDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVVQTN--ST 153
L + ++ G+ + ++ IR A ++ E+S L D +Y++ ++ +
Sbjct 64 LGMKLVERGHFVVGSIDIRQKAKGWLTELSRRTGQTTHLGILDGREGVYIEKIEGKLAAI 123
Query 154 MRRPIGSTLPLHNSSMGRACLAATPKQERYFLLEAIQKRE-PENWIEIKEKLDIAFDQYA 212
IG LP+H +++G+ +A + E LLE Q + +E L A Q
Sbjct 124 AYSRIGRRLPVHATAIGKVLIAWLGEAELNALLEGYQYTTFTPATLASREALMSALAQTR 183
Query 213 EYGYCLSLGEWQQGINSVAVPL 234
E GY L E +QG+ VAVP+
Sbjct 184 EQGYALDSEENEQGVRCVAVPV 205
>P42968 HTH-type transcriptional regulator KipR [Bacillus subtilis
(strain 168)]
Length=250
Score = 71.6 bits (174), Expect = 3e-18
Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 20/246 (8%)
Query 38 SLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNSPKYMLD 97
++ + + LL F L L EL +TG+PK ++ R+ ++L +G+L + S Y L
Sbjct 7 TVVKSMALLNLF-LHKPSLTLSELVSLTGMPKTSVHRMVSSLEEMGFLSR-DASGAYSLG 64
Query 98 LGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVVQTNSTMR-- 155
L L G L IR A MEE+ V L RD +Y++ ++ T+R
Sbjct 65 LVFLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQLIMRDGNEAIYVEKIEGTQTVRLY 124
Query 156 RPIGSTLPLHNSSMGRACLAATPKQERYFLLEAIQKREP-----ENWIEIKEKLDIAFDQ 210
IG PL+ + R+ L+ P++E +EA K+ I EKL D
Sbjct 125 TAIGRRSPLYAGACARSILSFLPREE----IEAYIKQTELISIGSGTITDPEKLLQEIDA 180
Query 211 YAEYGYCLSLGEWQQGINSVAVPLMSTKHGLYVFNCGAPSYALSTEKLIEDIGPRLKYMV 270
+ GY +S E + ++ P+ + + + S A + ED RL Y+
Sbjct 181 SVQNGYTVSYSELENYTAAIGAPIFNHERQV----AAGISIAGFEARFTED---RLPYLT 233
Query 271 NSIQDA 276
++DA
Sbjct 234 EKVKDA 239
>Q43992 p-hydroxybenzoate hydroxylase transcriptional activator
[Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=271
Score = 69.3 bits (168), Expect = 3e-17
Identities = 64/252 (25%), Positives = 113/252 (45%), Gaps = 15/252 (6%)
Query 35 FIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNSPKY 94
+IA LA+GL LL F + Q L ++A+ TG+ + R TL LGYL + +
Sbjct 22 YIAGLAKGLALLEAFGIDRQRLNVTQVAERTGISRTAARRYLKTLKFLGYLD--TDEHYF 79
Query 95 MLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNML-----YLDVVQ 149
L VL + LS+ + A F+ + ++ D ++ YL Q
Sbjct 80 WLTHRVLRFSSSYLSSAHLPKVAQSFLNLLCAQTSLTFSIVVLDEHEVVPVARSYLP-QQ 138
Query 150 TN---STMRRPIGSTLPLHNSSMGRACLAATPKQERYFLLEAI-QKREPENWIEIKEKLD 205
N S +G+ LP H +S G+ L+ ++ + +E KR I +
Sbjct 139 DNLRVSPYGMHLGNRLPAHATSTGKVLLSVLDREVQIEWIEKYGLKRLTPYTITDEHTFL 198
Query 206 IAFDQYAEYGYCLSLGEWQQGINSVAVPLMSTKHGLYV--FNCGAPSYALSTEKLIEDIG 263
D + YCLS E + G+ ++AVP+++ + GL + NC + + + + LI+ +
Sbjct 199 ETLDAVRQSDYCLSTEEHELGLIAIAVPVLNAQ-GLTIAALNCMSQTNRVQPQYLIDQVL 257
Query 264 PRLKYMVNSIQD 275
P L+ N +++
Sbjct 258 PLLRNTANELRN 269
>P77569 DNA-binding transcriptional activator MhpR [Escherichia
coli (strain K12)]
Length=277
Score = 68.9 bits (167), Expect = 4e-17
Identities = 64/259 (25%), Positives = 114/259 (44%), Gaps = 11/259 (4%)
Query 30 ENNPQF----IASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYL 85
+NN Q + L RGL LL + LA+++GL + T+ R+ TL GY+
Sbjct 2 QNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLLAELSGLHRTTVRRLLETLQEEGYV 61
Query 86 KQMPNSPKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYL 145
++ P+ + L + V L I A + ++ P ++ D M+
Sbjct 62 RRSPSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLREVVWPTDVSTLDVDAMVVR 121
Query 146 DVVQTNSTM---RRPIGSTLPLHNSSMGRACLAATPKQERYFLLEAIQKREPENWIEIKE 202
+ S + R +G LPL ++ G LA P+Q+R L+E + R +++ +E
Sbjct 122 ETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPEQDRKELIEMLASRPGDDYQLARE 181
Query 203 --KLDIAFDQYAEYGYCLSLGEWQQ--GINSVAVPLMSTKHGLYVFNCGAPSYALSTEKL 258
KL+ + + GY + W Q I S+AVPL S + + N + A++ E+
Sbjct 182 PLKLEAILARARKEGYGQNYRGWDQEEKIASIAVPLRSEQRVIGCLNLVYMASAMTIEQA 241
Query 259 IEDIGPRLKYMVNSIQDAL 277
E P L+ + I++ +
Sbjct 242 AEKHLPALQRVAKQIEEGV 260
>P37671 DNA-binding transcriptional repressor YiaJ [Escherichia
coli (strain K12)]
Length=282
Score = 64.3 bits (155), Expect = 2e-15
Identities = 63/236 (27%), Positives = 110/236 (47%), Gaps = 12/236 (5%)
Query 30 ENNPQFIASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMP 89
+ P SL RGL L+ S L+++ GL K T+ R+ L S GY+ P
Sbjct 17 KERPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAP 76
Query 90 NSPKYMLDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLNMLYLDVVQ 149
+ Y L +++G ALS+L+I A +E +++ + ++R+ + + + ++
Sbjct 77 AAGSYRLTTKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIYKLE 136
Query 150 TNSTMRRP---IGSTLPLHNSSMGRACLA-ATPKQERYFLLEAIQKREPENWIEIKEKLD 205
+ M R IG +PL+ S+MG+ +A P + + + +P I E L
Sbjct 137 PTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQPLTRNTITE-LP 195
Query 206 IAFDQYA---EYGYCLSLGEWQQGINSVAVPLMSTKHGLYVFNCGAPSYALSTEKL 258
FD+ A E G + E + G++ +AVP+ HG + A S +LST +L
Sbjct 196 AMFDELAHIRESGAAMDREENELGVSCIAVPVFDI-HGRVPY---AVSISLSTSRL 247
>P16528 Transcriptional repressor IclR [Escherichia coli (strain
K12)]
Length=274
Score = 61.6 bits (148), Expect = 1e-14
Identities = 40/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (3%)
Query 36 IASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNSPKYM 95
+ SL RGL+LL + + + ELA+ GLP T R+ T+ G+++Q+ +
Sbjct 24 VQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWA 83
Query 96 LDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLN--MLYLDVVQTNST 153
+ +G + L + ++ H + + + V +A D+ + + +D VQ
Sbjct 84 IGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCTHL 143
Query 154 MR--RPIGSTLPLHNSSMGRACLAATPKQE 181
MR PIG LP+H S G+A LA +++
Sbjct 144 MRMSAPIGGKLPMHASGAGKAFLAQLSEEQ 173
>P17430 Acetate operon repressor [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=274
Score = 61.2 bits (147), Expect = 2e-14
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 4/155 (3%)
Query 36 IASLARGLELLRCFSLQHQVLGNQELAKMTGLPKPTIARITNTLVSLGYLKQMPNSPKYM 95
+ SL RGL+LL + + + ELA+ GLP T R+ T+ G+++Q+ +
Sbjct 24 VQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWA 83
Query 96 LDLGVLSLGYAALSNLSIRTTAHRFMEEMSMYAQAPVALAARDRLN--MLYLDVVQTNST 153
+ +G + L + ++ H + ++ + V LA D+ + + +D VQ
Sbjct 84 VGAHAFIVGSSFLQSRNLLAIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQL 143
Query 154 MR--RPIGSTLPLHNSSMGRACLAATPKQERYFLL 186
MR PIG LP+H S G+A L+ +++ LL
Sbjct 144 MRMSAPIGGKLPMHASGAGKAFLSQLSEEQVTSLL 178
Lambda K H a alpha
0.320 0.134 0.391 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 613200
Database: 9156fc53136808684d2f5a3040d5171f.SwissProt.fasta
Posted date: May 20, 2024 9:36 PM
Number of letters in database: 3,017
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
