BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 42c82cd0f6a5d4172c662a4bd4faf52a.SwissProt.fasta
13 sequences; 2,680 total letters
Query= ACIAD1729
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
P43506 HTH-type transcriptional repressor Bm3R1 [Priestia megater... 50.8 1e-11
P9WMB8 HTH-type transcriptional repressor KstR2 [Mycobacterium tu... 45.4 1e-09
P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium tu... 45.4 1e-09
P0ACT3 Probable acrEF/envCD operon repressor [Escherichia coli O1... 44.3 3e-09
P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli (s... 44.3 3e-09
A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacteriu... 43.9 4e-09
P32398 Uncharacterized HTH-type transcriptional regulator YhgD [B... 43.5 4e-09
Q0S7V2 HTH-type transcriptional repressor KstR2 [Rhodococcus jost... 43.5 5e-09
P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrh... 42.7 9e-09
O34381 HTH-type transcriptional regulator PksA [Bacillus subtilis... 42.0 2e-08
P51561 Tetracycline repressor protein class H [Pasteurella multoc... 41.6 2e-08
P03038 Tetracycline repressor protein class A from transposon 172... 41.2 3e-08
P0C068 Probable HTH-type transcriptional regulator MepR [Pseudomo... 39.7 1e-07
>P43506 HTH-type transcriptional repressor Bm3R1 [Priestia megaterium]
Length=192
Score = 50.8 bits (120), Expect = 1e-11
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 9/186 (5%)
Query 26 IIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQEILKMIK 85
I A + A G TT IA+ A V G++Y YFKNKE + + + V E L+ I+
Sbjct 11 IFSASLLLFAERGFDATTMPMIAENAKVGAGTIYRYFKNKESLVNELFQQHVNEFLQCIE 70
Query 86 DLTPVIMDMELESVIEIIFYNFRDLL--TRNNERYLICLR-HANELRYDKYINQIERELM 142
+ E + + + F ++ T+N+ R L ++ H+ + ++L+
Sbjct 71 S----GLANERDGYRDGFHHIFEGMVTFTKNHPRALGFIKTHSQGTFLTEESRLAYQKLV 126
Query 143 NIVMKYMMHNPKYLKVNNLAVTAYVSINSGIFNIARHLILPNPYISF-DELVDGLKTMIM 201
V + K + NL A ++I G F + + ++ N Y+S DEL+ G++ +
Sbjct 127 EFVCTFFREGQKQGVIRNLPENALIAILFGSF-MEVYEMIENDYLSLTDELLTGVEESLW 185
Query 202 SYINAE 207
+ ++ +
Sbjct 186 AALSRQ 191
>P9WMB8 HTH-type transcriptional repressor KstR2 [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=200
Score = 45.4 bits (106), Expect = 1e-09
Identities = 22/62 (35%), Positives = 34/62 (55%), Gaps = 0/62 (0%)
Query 26 IIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQEILKMIK 85
++E A G+ TT R IAD AG+ GSLY +F +KEE+ D + F+ + +
Sbjct 15 LLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYR 74
Query 86 DL 87
D+
Sbjct 75 DI 76
>P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=200
Score = 45.4 bits (106), Expect = 1e-09
Identities = 22/62 (35%), Positives = 34/62 (55%), Gaps = 0/62 (0%)
Query 26 IIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQEILKMIK 85
++E A G+ TT R IAD AG+ GSLY +F +KEE+ D + F+ + +
Sbjct 15 LLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYR 74
Query 86 DL 87
D+
Sbjct 75 DI 76
>P0ACT3 Probable acrEF/envCD operon repressor [Escherichia coli
O157:H7]
Length=220
Score = 44.3 bits (103), Expect = 3e-09
Identities = 22/60 (37%), Positives = 34/60 (57%), Gaps = 0/60 (0%)
Query 13 KPRQTRAKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAM 72
K + A T +IE A HG+S TT IAD A V+ G++Y +F+NK ++++ M
Sbjct 3 KRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEM 62
>P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli
(strain K12)]
Length=220
Score = 44.3 bits (103), Expect = 3e-09
Identities = 22/60 (37%), Positives = 34/60 (57%), Gaps = 0/60 (0%)
Query 13 KPRQTRAKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAM 72
K + A T +IE A HG+S TT IAD A V+ G++Y +F+NK ++++ M
Sbjct 3 KRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEM 62
>A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=205
Score = 43.9 bits (102), Expect = 4e-09
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 0/54 (0%)
Query 24 DTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFV 77
D +++ A G+ TT R IAD AG+ GSLY +FK+KE++ + + F+
Sbjct 14 DELLQLAATMFADRGLKATTVRDIADSAGILSGSLYHHFKSKEQMVEEVLRDFL 67
>P32398 Uncharacterized HTH-type transcriptional regulator YhgD
[Bacillus subtilis (strain 168)]
Length=191
Score = 43.5 bits (101), Expect = 4e-09
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 0/55 (0%)
Query 26 IIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQEI 80
I+EA S G TT +A +A V G++Y +FKNKEE++D + + ++E+
Sbjct 9 ILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLKEM 63
>Q0S7V2 HTH-type transcriptional repressor KstR2 [Rhodococcus
jostii (strain RHA1)]
Length=204
Score = 43.5 bits (101), Expect = 5e-09
Identities = 20/59 (34%), Positives = 33/59 (56%), Gaps = 0/59 (0%)
Query 35 ALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQEILKMIKDLTPVIMD 93
A G+ TT R IAD AG+ GSLY +F +KE + D + F+ ++ +++ +D
Sbjct 28 AERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLD 86
Score = 19.2 bits (38), Expect = 0.58
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query 21 VTVDTIIEAGFISVALHGMS 40
VTVDT+ + ++S+ L G++
Sbjct 182 VTVDTVAKQ-YLSIVLDGLA 200
>P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrhoeae]
Length=210
Score = 42.7 bits (99), Expect = 9e-09
Identities = 22/65 (34%), Positives = 38/65 (58%), Gaps = 0/65 (0%)
Query 16 QTRAKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAAS 75
+T A T + ++ A + G++ T+ IA AGV+ G+LY +FKNKE+++DA+
Sbjct 5 KTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQR 64
Query 76 FVQEI 80
+I
Sbjct 65 ICDDI 69
>O34381 HTH-type transcriptional regulator PksA [Bacillus subtilis
(strain 168)]
Length=205
Score = 42.0 bits (97), Expect = 2e-08
Identities = 31/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query 14 PRQTRAKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMA 73
P+Q + I EA + + GM G + R+IA AG+S+G+L YF ++E+ A A
Sbjct 2 PKQIDHEKRRKQIAEATWRVILERGMEGASARNIAKEAGLSLGALRHYFSTQDELL-AFA 60
Query 74 ASFVQE-ILKMIKDLTPVIMD-MELESVIEII 103
VQE + IKD+ + D + E V++I+
Sbjct 61 MKLVQEKVTDRIKDI--AVRDLLPKEKVLQIL 90
>P51561 Tetracycline repressor protein class H [Pasteurella multocida]
Length=207
Score = 41.6 bits (96), Expect = 2e-08
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 0/61 (0%)
Query 19 AKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQ 78
AK+ + +I+ I + G+ G TTR++A GV +LY + KNK + DA+A + +Q
Sbjct 2 AKLDKEQVIDDALILLNEVGIEGLTTRNVAQKIGVEQPTLYWHVKNKRALLDALAETILQ 61
Query 79 E 79
+
Sbjct 62 K 62
>P03038 Tetracycline repressor protein class A from transposon
1721 [Escherichia coli]
Length=216
Score = 41.2 bits (95), Expect = 3e-08
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 0/60 (0%)
Query 20 KVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAASFVQE 79
K+ +T+I A + G+ G TTR +A+ GV +LY +F+NK + DA+A + + E
Sbjct 3 KLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAE 62
>P0C068 Probable HTH-type transcriptional regulator MepR [Pseudomonas
putida]
Length=210
Score = 39.7 bits (91), Expect = 1e-07
Identities = 22/57 (39%), Positives = 34/57 (60%), Gaps = 0/57 (0%)
Query 19 AKVTVDTIIEAGFISVALHGMSGTTTRHIADIAGVSVGSLYEYFKNKEEIYDAMAAS 75
A+ T IIEA + G++ TT IA++AGV+ G++Y +F NK E+ A+ S
Sbjct 9 AQETPAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDS 65
Lambda K H a alpha
0.326 0.140 0.395 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 384736
Database: 42c82cd0f6a5d4172c662a4bd4faf52a.SwissProt.fasta
Posted date: Jun 1, 2024 10:09 PM
Number of letters in database: 2,680
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
