BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fca9f53be39d171886971978fa867faa.SwissProt.fasta
17 sequences; 5,218 total letters
Query= ACIAD1745
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
P39376 HTH-type transcriptional regulator YjiE [Escherichia coli ... 161 3e-51
Q8X487 HTH domain-truncated transcriptional regulator QseD [Esche... 115 5e-34
P49518 Probable RuBisCO transcriptional regulator [Trieres chinen... 72.8 5e-18
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 71.2 2e-17
P73123 Probable RuBisCO transcriptional regulator [Synechocystis ... 69.7 7e-17
Q3MCB5 Probable RuBisCO transcriptional regulator [Trichormus var... 68.6 2e-16
Q8YQ82 Probable RuBisCO transcriptional regulator [Nostoc sp. (st... 68.6 2e-16
O68014 HTH-type transcriptional regulator BenM [Acinetobacter bay... 67.0 5e-16
O34827 Uncharacterized HTH-type transcriptional regulator YkuM [B... 66.2 8e-16
Q4G384 Probable RuBisCO transcriptional regulator [Emiliania huxl... 66.2 9e-16
P07774 HTH-type transcriptional regulator CatM [Acinetobacter bay... 64.7 3e-15
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 61.2 4e-14
Q47083 HTH-type transcriptional regulator cbl [Escherichia coli (... 61.2 4e-14
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 60.8 5e-14
Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis... 60.8 6e-14
Q08598 HTH-type transcriptional regulator cbl [Klebsiella aerogenes] 60.8 6e-14
P44418 Hydrogen peroxide-inducible genes activator [Haemophilus i... 60.5 7e-14
>P39376 HTH-type transcriptional regulator YjiE [Escherichia coli
(strain K12)]
Length=303
Score = 161 bits (408), Expect = 3e-51
Identities = 95/297 (32%), Positives = 161/297 (54%), Gaps = 10/297 (3%)
Query 2 SLEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTD 61
++E +W+ D LTLE+ R+FS+AA R VSQ AF+RRI+ LEQ++G + R ++ ++
Sbjct 10 NIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSE 69
Query 62 AGQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKD 121
G+I + + + QQL + LA L + + IK A HSLS + P
Sbjct 70 QGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPPL--- 126
Query 122 FKIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPVTLIDE 181
F + A +V E L+EG D + + DE L+ +++L E+++ PV DE
Sbjct 127 FTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLE----APFDHIRLFESQLFPVCASDE 182
Query 182 DGNAKYDLNQ-RFPLLSYSKNAYLRNLVDQVIV--NRLDYRILYETDHANNLKDFVLQGA 238
G A ++L Q FPLL+YS+N+Y+ L+++ + + L + + + + LK L G
Sbjct 183 HGEALFNLAQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQVALDGC 242
Query 239 GIAWLPKITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLRKDDYLKIFWDSLRNIE 295
GIAWLP+ I++++ +L ++N E +I Q + ++ R + + FW LR +E
Sbjct 243 GIAWLPEYAIQQEIRSGKLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELE 299
>Q8X487 HTH domain-truncated transcriptional regulator QseD [Escherichia
coli O157:H7]
Length=242
Score = 115 bits (287), Expect = 5e-34
Identities = 70/242 (29%), Positives = 123/242 (51%), Gaps = 10/242 (4%)
Query 57 MEFTDAGQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFP 116
++ ++ G+I + + + QQL + LA L + + IK A HSLS + P
Sbjct 4 LQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMP 63
Query 117 EYIKDFKIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPV 176
F + A +V E L+EG D + + DE L+ +++L E+++ PV
Sbjct 64 PL---FTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLEA----PFDHIRLFESQLFPV 116
Query 177 TLIDEDGNAKYDLNQ-RFPLLSYSKNAYLRNLVDQVIV--NRLDYRILYETDHANNLKDF 233
DE G A +DL Q FPLL+YS+N+Y+ L+++ + + L + + + + LK
Sbjct 117 CASDEHGEALFDLVQPHFPLLNYSRNSYMGRLINRTLTRHSELSFSTFFVSSMSELLKQV 176
Query 234 VLQGAGIAWLPKITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLRKDDYLKIFWDSLRN 293
L G GIAWLP+ I++++ +L ++N E +I Q + ++ R + + FW LR
Sbjct 177 ALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRE 236
Query 294 IE 295
+E
Sbjct 237 LE 238
>P49518 Probable RuBisCO transcriptional regulator [Trieres chinensis]
Length=309
Score = 72.8 bits (177), Expect = 5e-18
Identities = 61/278 (22%), Positives = 124/278 (45%), Gaps = 17/278 (6%)
Query 11 LLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQILLTTA 70
L + E+SF++AAE FVSQ + +++I+ LE L +L R + + T AG++ L +
Sbjct 13 LKAIATEKSFTRAAEVLFVSQPSLSKQIKTLESRLNISLLNRENNIVSLTQAGKLFLEYS 72
Query 71 KSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAAN 130
+ I + +LN+L + + ++ + + L LF + IE+ +
Sbjct 73 ERILALCEESCRVLNDLKTGDRGNLIVGASQTIGTYLMPRVLALFAQNHPQINIEVHVDS 132
Query 131 VGEGFKLLKEGACDFLICYSD-----ESKLKL---INHEVLSYLKLGETEIIPVTLIDED 182
+ K + EG D + + E LK+ +N E++ + P L +
Sbjct 133 TRKIAKRVLEGDIDIAVVGGNIPEEIEKNLKVEDFVNDELILIIPKSH----PFALKKKK 188
Query 183 GNAKYDLNQRFPLLSYSKNAYLRNLVDQVIV----NRLDYRILYETDHANNLKDFVLQGA 238
K DL ++ + N+ +R L+D +++ + I+ + + +K V G
Sbjct 189 KINKDDL-YHLNFITLNSNSTIRKLIDNILIQIAFEPKQFNIIMQLNSIEAIKTAVSLGL 247
Query 239 GIAWLPKITIEEDLLRKRLKIINAREFIIKQQIFIFKN 276
G A++ IE+++ K ++I+ + I + + I N
Sbjct 248 GAAFVSSSAIEKEIELKTIEIVTIEDIKITRILSIISN 285
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 71.2 bits (173), Expect = 2e-17
Identities = 74/289 (26%), Positives = 135/289 (47%), Gaps = 19/289 (7%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
++IR + L + + +SF+KA++ +VSQ ++ I+ LE+ LG + RN R +E TDA
Sbjct 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDA 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G + A+ I + + LN++ + ++ + + S FF + L F E +
Sbjct 61 GHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNV 120
Query 123 KIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVL--SYLKLGETEIIPV---- 176
+LV +G ++EG D + D + L +E + S+ + ET ++ V
Sbjct 121 TFQLVE----DGSIKVQEGVGDGSL---DIGVVVLPANEDIFHSFTIVKETLMLVVHPSH 173
Query 177 TLIDEDGNAKYDLNQRFPLLSYSKNAYLRN-LVDQVIVNRLDYRILYETDHANNLKDFVL 235
L DE +L P + + ++ L N ++ + I I+YET + + + V
Sbjct 174 RLADEKECQLRELKDE-PFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVS 232
Query 236 QGAGIAWLPKITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLRKDDYL 284
GI LP+ I L +++K+I + +I + I RKD YL
Sbjct 233 ANLGIGLLPE-RICRGLDPEKVKVIPLVDPVIPWHLAII---WRKDRYL 277
>P73123 Probable RuBisCO transcriptional regulator [Synechocystis
sp. (strain PCC 6803 / Kazusa)]
Length=345
Score = 69.7 bits (169), Expect = 7e-17
Identities = 65/278 (23%), Positives = 119/278 (43%), Gaps = 13/278 (5%)
Query 11 LLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQILLTTA 70
L + E SF +AA+ +VSQ A + ++Q LE+ L P+ +R R + T+AG +LL
Sbjct 14 LKAIASEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQLTEAGHLLLNYG 73
Query 71 KSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAAN 130
+ I T + +L T+ + + + + +F + D ++L +
Sbjct 74 EKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDVTVQLQVHS 133
Query 131 VGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETE---IIPV--TLIDEDGNA 185
+ G D I E +L E L+ L E E I+PV L +
Sbjct 134 TRRTAWGVANGQVDLAI-IGGEVPAEL--QETLTVLPYAEDELALILPVLHPLAQAETIQ 190
Query 186 KYDLNQRFPLLSYSKNAYLRNLVDQVI----VNRLDYRILYETDHANNLKDFVLQGAGIA 241
K DL + +S + +R ++D+V+ ++ +I E + +K+ V G G A
Sbjct 191 KEDL-YKLKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEAIKNAVQSGLGAA 249
Query 242 WLPKITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLR 279
++ IE++L L I + I++ + + N R
Sbjct 250 FVSTTAIEKELEMNVLHIAPIKNVEIRRVLSVIINPNR 287
>Q3MCB5 Probable RuBisCO transcriptional regulator [Trichormus
variabilis (strain ATCC 29413 / PCC 7937)]
Length=337
Score = 68.6 bits (166), Expect = 2e-16
Identities = 59/275 (21%), Positives = 117/275 (43%), Gaps = 7/275 (3%)
Query 11 LLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQILLTTA 70
L + E SF +AA+ +VSQ A + ++Q LE+ L P+ +R R + T+AG +LL
Sbjct 14 LKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAGHLLLNYG 73
Query 71 KSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAAN 130
+ I T + +L T+ + + K + +F + D ++L +
Sbjct 74 EKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVAVQLHVHS 133
Query 131 VGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPV--TLIDEDGNAKYD 188
+ G D I + + E++ Y + I+PV ++ K D
Sbjct 134 TRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPFTKQETIQKED 193
Query 189 LNQRFPLLSYSKNAYLRNLVDQVI----VNRLDYRILYETDHANNLKDFVLQGAGIAWLP 244
L + ++ + +R ++DQV+ ++ ++I E + +K+ V G G A++
Sbjct 194 L-YKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQSGLGAAFVS 252
Query 245 KITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLR 279
I ++L L +IK+ +++ N R
Sbjct 253 TSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNR 287
>Q8YQ82 Probable RuBisCO transcriptional regulator [Nostoc sp.
(strain PCC 7120 / SAG 25.82 / UTEX 2576)]
Length=337
Score = 68.6 bits (166), Expect = 2e-16
Identities = 60/275 (22%), Positives = 117/275 (43%), Gaps = 7/275 (3%)
Query 11 LLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQILLTTA 70
L + E SF +AA+ +VSQ A + ++Q LE+ L P+ +R R + T+AG +LL+
Sbjct 14 LKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAGHLLLSYG 73
Query 71 KSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAAN 130
+ I T + +L T+ + + K + +F + D ++L +
Sbjct 74 EKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVAVQLHVHS 133
Query 131 VGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPV--TLIDEDGNAKYD 188
+ G D I + + E++ Y + I+PV D K D
Sbjct 134 TRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPFTKLDTIQKED 193
Query 189 LNQRFPLLSYSKNAYLRNLVDQVI----VNRLDYRILYETDHANNLKDFVLQGAGIAWLP 244
L + ++ + +R ++DQV+ ++ ++I E + +K+ V G G A++
Sbjct 194 L-YKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQSGLGAAFVS 252
Query 245 KITIEEDLLRKRLKIINAREFIIKQQIFIFKNKLR 279
I ++L L +IK+ +++ N R
Sbjct 253 TSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNR 287
>O68014 HTH-type transcriptional regulator BenM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=304
Score = 67.0 bits (162), Expect = 5e-16
Identities = 53/211 (25%), Positives = 101/211 (48%), Gaps = 18/211 (9%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
+E+R + + + +E+SF+KAA++ ++Q +R+IQ LE+ LG +LER SR ++ T
Sbjct 1 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPE 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G A + ++ +++ + + E TI+ V SL + + L+ + +
Sbjct 61 GHFFYQYAIKLLSNVDQMVSMTKRI-ASVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNL 119
Query 123 KIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPVTLIDED 182
+IEL + LKEG D + +LK+ + + L E ++ V
Sbjct 120 RIELYEMGTKAQTEALKEGRID-----AGFGRLKISDPAIKRTLLRNERLMVAV------ 168
Query 183 GNAKYDLNQRFPLLSYSKNAYLRNLVDQVIV 213
+A + LNQ K +L +L+D+ I+
Sbjct 169 -HASHPLNQ-----MKDKGVHLNDLIDEKIL 193
>O34827 Uncharacterized HTH-type transcriptional regulator YkuM
[Bacillus subtilis (strain 168)]
Length=293
Score = 66.2 bits (160), Expect = 8e-16
Identities = 63/254 (25%), Positives = 113/254 (44%), Gaps = 8/254 (3%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
++++ + L+ L +E + KAAER FVSQ A ++R+Q +E++ G I R+ + + T A
Sbjct 1 MQLQELHMLVVLAEELNMRKAAERLFVSQPALSQRLQTIEKAWGTKIFLRSQKGLTVTPA 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G+ ++ A + + ++ L T+K AV + + K LK + E +
Sbjct 61 GEKIIQFANDVTLEQERIRENIDELEGEIHGTLKLAVASIIGQHWLPKVLKTYVEKYPNA 120
Query 123 KIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPVTLIDED 182
KI L+ E K L E I + ++ + +L L +TEI + I++
Sbjct 121 KISLITGWSSEMLKSLYEDQVHIGIIRGNPEWKGRKDYLMTDHLYLVDTEI---SCIEDI 177
Query 183 GNAKYDLNQRFPLLSYSKNAYLRNLVDQVIVNRLDYRILYETDHANNLKDFVLQGAGIAW 242
+ + Q +Y + +++ Q IL D K L G G A
Sbjct 178 AHTERPFIQFKSDSTYFQE--IQHWWHQKFKTSPKQTIL--VDQIETCKQMALHGIGYAI 233
Query 243 LPKITIE-EDLLRK 255
LP +T++ ED + K
Sbjct 234 LPSVTLQNEDKVNK 247
>Q4G384 Probable RuBisCO transcriptional regulator [Emiliania
huxleyi]
Length=314
Score = 66.2 bits (160), Expect = 9e-16
Identities = 62/273 (23%), Positives = 112/273 (41%), Gaps = 7/273 (3%)
Query 13 TLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQILLTTAKS 72
T+ +E SF AA++ ++SQ A +R++Q LE+ L PI R+ R T+ G IL+ A+
Sbjct 16 TIHREGSFKTAAKKLYISQPAVSRQVQNLERQLNTPIFYRDKRKARLTETGHILVKYAEQ 75
Query 73 IEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAANVG 132
I T L+ L N T+ + + + + +F IEL +
Sbjct 76 ILSLCEETCQALDELKSINSGTLVIGASQTTGTYLMPRLIGIFRHKYPQISIELKVHSTR 135
Query 133 EGFKLLKEGACDFLICYSDESKLKLINHEVLSYLKLGETEIIPVT--LIDEDGNAKYDLN 190
+ G D I + E++SY + IIP K DL
Sbjct 136 RISWGVANGEIDLAIVGGEVPPELQGTLEIISYAEDELALIIPQAHPFATLQSIQKEDL- 194
Query 191 QRFPLLSYSKNAYLRNLVDQVI----VNRLDYRILYETDHANNLKDFVLQGAGIAWLPKI 246
R ++ + +R++++ + ++ ++I E + +K+ V G G A++
Sbjct 195 YRLRFIALDTQSTIRSVIENTLTQSGIDSRYFKIEMELNSIEAIKNAVQSGLGAAFVSVS 254
Query 247 TIEEDLLRKRLKIINAREFIIKQQIFIFKNKLR 279
I ++L L + IK+ + I N R
Sbjct 255 AISKELELGILHWAKIEDVTIKRTLSILINPKR 287
>P07774 HTH-type transcriptional regulator CatM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=303
Score = 64.7 bits (156), Expect = 3e-15
Identities = 47/193 (24%), Positives = 88/193 (46%), Gaps = 17/193 (9%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
+E+R + +T+ +E+S SKAAE+ ++Q +R+IQ+LE+ LG + ER R + T+A
Sbjct 1 MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEA 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G A I ++ + ++ T++ V SL + + LF + +
Sbjct 61 GMFFYQHAVQILTHTAQASSMAKRIATVSQ-TLRIGYVSSLLYGLLPEIIYLFRQQNPEI 119
Query 123 KIELVAANVGEGFKLLKEGACDF--------------LICYSDESKLKLINHEVLSYLKL 168
IEL+ + LK+G D ++ + ++ KL + H L+ +
Sbjct 120 HIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIVLHKEQLKLAIHKHHHLN--QF 177
Query 169 GETEIIPVTLIDE 181
T + +IDE
Sbjct 178 AATGVHLSQIIDE 190
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 61.2 bits (147), Expect = 4e-14
Identities = 52/183 (28%), Positives = 87/183 (48%), Gaps = 17/183 (9%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
+E+R + + + Q +F++AAE+ SQ + + +I+ LE +G P+L R+ R + T A
Sbjct 1 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKVALTAA 60
Query 63 GQILLTTAKSI-EQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKD 121
G+ L A +I EQ NA L + ++TI F V S K L +F D
Sbjct 61 GECFLQDALAILEQAENAKLRARKIVQEDRQLTIGF--VPSAEVNLLPKVLPMFRLRQPD 118
Query 122 FKIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLS----YLKLGETEIIPVT 177
IELV+ + + ++ G D + L+ H V S YL+L + ++ V
Sbjct 119 TLIELVSLITTQQEEKIRRGELD----------VGLMRHPVYSPEIDYLELFDEPLVVVL 168
Query 178 LID 180
+D
Sbjct 169 PVD 171
>Q47083 HTH-type transcriptional regulator cbl [Escherichia coli
(strain K12)]
Length=316
Score = 61.2 bits (147), Expect = 4e-14
Identities = 60/253 (24%), Positives = 111/253 (44%), Gaps = 23/253 (9%)
Query 16 QERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPI-LERNSRYMEFTDAGQILLTTAKSIE 74
Q+ + ++ A F SQS +R I++LE LG I + R R + T+ G+ LL A+ I
Sbjct 15 QDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMTEPGKALLVIAERIL 74
Query 75 QQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAANVGEG 134
+ + L + + A H+ + + +K F E + ++EL+ E
Sbjct 75 NEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEI 134
Query 135 FKLLKEGACDFLIC---YSDESKLKLI-----NHEVLSYLKLGETEIIPVTLIDEDGNAK 186
LL+ G D I S++ +L +H +L T+I P+TL
Sbjct 135 ATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTL-------- 186
Query 187 YDLNQRFPLLSYSKNAYLRNLVDQVIVNR-LDYRILYETDHANNLKDFVLQGAGIAWLPK 245
+ ++PL++Y + R+ +D + L I+ ++ +K +V G GI + +
Sbjct 187 -ESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAE 245
Query 246 ITI----EEDLLR 254
+ EE+L+R
Sbjct 246 QSSGEQEEENLIR 258
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 60.8 bits (146), Expect = 5e-14
Identities = 34/110 (31%), Positives = 60/110 (55%), Gaps = 0/110 (0%)
Query 6 RWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDAGQI 65
R I L + + SF++AA VSQ A +++I+QLE+SLG P+ +R+ R + TDAG++
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEV 63
Query 66 LLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLF 115
A Q+L A ++++ +++ AV + +S F + F
Sbjct 64 WRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADF 113
>Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis
(strain 168)]
Length=302
Score = 60.8 bits (146), Expect = 6e-14
Identities = 33/124 (27%), Positives = 63/124 (51%), Gaps = 0/124 (0%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
+E+R ++ + + +E F KAA R ++Q +++I+QLE+ +G +L+R R++E T A
Sbjct 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G+I L + Q+ + L R + + V S + F ++ + +
Sbjct 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120
Query 123 KIEL 126
KIEL
Sbjct 121 KIEL 124
>Q08598 HTH-type transcriptional regulator cbl [Klebsiella aerogenes]
Length=316
Score = 60.8 bits (146), Expect = 6e-14
Identities = 56/235 (24%), Positives = 102/235 (43%), Gaps = 19/235 (8%)
Query 16 QERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPI-LERNSRYMEFTDAGQILLTTAKSIE 74
Q+ + ++ A + SQS +R I++LE+ LG I + R R + T+ G+ LL+ A+ I
Sbjct 15 QDYNLTEVANMLYTSQSGVSRHIRELEEELGIEIFIRRGKRLLGMTEPGKALLSIAERIL 74
Query 75 QQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDFKIELVAANVGEG 134
+ + L + + A H+ + +K F E D ++ELV E
Sbjct 75 NEASNVRRLADLFTNDASGVLTIATTHTQARYSLPPVIKAFRELFSDVRVELVQGTPQEI 134
Query 135 FKLLKEGACDFLIC---YSDESKLKLI-----NHEVLSYLKLGETEIIPVTLIDEDGNAK 186
LL G D I S++ L +H +L T++ P+TL
Sbjct 135 EALLHNGGADIGIASERLSNDPTLAAFPWFRWHHSLLVPKDHPLTQVSPLTL-------- 186
Query 187 YDLNQRFPLLSYSKNAYLRNLVDQVIVNR-LDYRILYETDHANNLKDFVLQGAGI 240
+ R+PL++Y + R+ +D+ + L I+ ++ +K +V G G+
Sbjct 187 -EAIARWPLITYRQGITGRSRIDEAFNRKGLMPDIVLSAQDSDVIKTYVELGLGV 240
>P44418 Hydrogen peroxide-inducible genes activator [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=301
Score = 60.5 bits (145), Expect = 7e-14
Identities = 53/259 (20%), Positives = 110/259 (42%), Gaps = 3/259 (1%)
Query 3 LEIRWIEDLLTLEQERSFSKAAERRFVSQSAFTRRIQQLEQSLGYPILERNSRYMEFTDA 62
+ IR +E L+ L + + F +AA+ VSQ + +I++LE LG +LER SR + FT +
Sbjct 1 MNIRDLEYLVALSEYKHFRRAADSCNVSQPTLSGQIRKLEDELGIILLERTSRKVLFTQS 60
Query 63 GQILLTTAKSIEQQLNATLALLNNLNRANEVTIKFAVVHSLSSTFFSKFLKLFPEYIKDF 122
G +L+ A+++ +++ + +N + + ++ ++ + + D
Sbjct 61 GMLLVDQARTVLREVKLLKEMASNQGKEMTGPLHIGLIPTVGPYLLPYIVPMLKAAFPDL 120
Query 123 KIELVAANVGEGFKLLKEGACDFLICYSDESKLKLINHEVLS-YLKLGETEIIPVTLIDE 181
++ L A + + L+ G D I + I + + + L +E P E
Sbjct 121 EVFLYEAQTHQLLEQLETGRLDCAIVATVPETEAFIEVPIFNEKMLLAVSEHHP--WAQE 178
Query 182 DGNAKYDLNQRFPLLSYSKNAYLRNLVDQVIVNRLDYRILYETDHANNLKDFVLQGAGIA 241
LN + L+ + +D ++ L++ V AGI
Sbjct 179 SKLPMNQLNGQEMLMLDDGHCLRNQALDYCFTAGAKENSHFQATSLETLRNMVAANAGIT 238
Query 242 WLPKITIEEDLLRKRLKII 260
++P++ + + RK +K I
Sbjct 239 FMPELAVLNEGTRKGVKYI 257
Score = 18.9 bits (37), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 7/34 (21%)
Query 126 LVAANVGEGF----KLLKEG---ACDFLICYSDE 152
+VAAN G F +L EG ++ CYS E
Sbjct 230 MVAANAGITFMPELAVLNEGTRKGVKYIPCYSPE 263
Lambda K H a alpha
0.324 0.140 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1113436
Database: fca9f53be39d171886971978fa867faa.SwissProt.fasta
Posted date: May 20, 2024 9:38 PM
Number of letters in database: 5,218
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
