BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fa80c30bbf6fe65d74d40048753ffba4.SwissProt.fasta
1 sequences; 719 total letters
Query= ACIAD1761
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
Q163V9 Phosphoribosylformylglycinamidine synthase subunit PurL [R... 36.6 7e-07
>Q163V9 Phosphoribosylformylglycinamidine synthase subunit PurL
[Roseobacter denitrificans (strain ATCC 33942 / OCh 114)]
Length=719
Score = 36.6 bits (83), Expect = 7e-07
Identities = 35/123 (28%), Positives = 49/123 (40%), Gaps = 15/123 (12%)
Query 134 DAVSITTIGAGAVTYIVGPVTGAAIGASSDVMALSIATGLVKA-----------ICVMVS 182
D V I IGAG V + G T A+ +SDV + V+ + + +
Sbjct 425 DTVRIPGIGAGIVR-VHG--TDKALAFTSDVTPRYVQANPVEGGKQAVAEAYRNLSAVGA 481
Query 183 TPM-TAKFMGLDNPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALTATFHTGLGCLMG 241
TP+ T M NP I G G + G+SA +AA D +V G L
Sbjct 482 TPLATTDNMNFGNPEKPEIMGQFVGAIKGISAAVAALDMPIVSGNVSLYNETDGTAILPT 541
Query 242 PTV 244
PT+
Sbjct 542 PTI 544
Score = 17.7 bits (34), Expect = 0.70
Identities = 16/70 (23%), Positives = 30/70 (43%), Gaps = 21/70 (30%)
Query 150 VGPVTGAAIGASSDVMALSIATGLVKAICVMVSTPMTA----KFMGLDNPRSAMIFGGLA 205
+ P GAA G G+++ + M + P+ A F + +P++ +
Sbjct 99 IEPYQGAATGVG----------GILRDVFTMGARPIAAMNSLSFGEISHPKTRQL----- 143
Query 206 GTVSGVSAGL 215
V+GV AG+
Sbjct 144 --VNGVVAGV 151
Score = 17.7 bits (34), Expect = 0.70
Identities = 6/22 (27%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 121 IVGCIFAWIFGYRDAVSITTIG 142
+V + A + GY + + T+G
Sbjct 143 LVNGVVAGVGGYGNCFGVPTVG 164
Score = 14.6 bits (26), Expect = 6.4
Identities = 5/12 (42%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 136 VSITTIGAGAVT 147
+SI +GA +T
Sbjct 262 ISIQDMGAAGLT 273
Lambda K H a alpha
0.329 0.142 0.425 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 153888
Database: fa80c30bbf6fe65d74d40048753ffba4.SwissProt.fasta
Posted date: May 11, 2024 3:17 PM
Number of letters in database: 719
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40