BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c62010ca54b8248dd060319590ca876d.SwissProt.fasta
17 sequences; 5,183 total letters
Query= ACIAD1762
Length=307
Score E
Sequences producing significant alignments: (Bits) Value
P52684 Malonate utilization transcriptional regulator [Klebsiella... 251 6e-86
Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli ... 99.4 2e-27
P37499 Uncharacterized HTH-type transcriptional regulator YybE [B... 99.0 2e-27
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 97.4 8e-27
P0ACQ6 Hydrogen peroxide-inducible genes activator [Escherichia c... 79.3 3e-20
P0ACQ5 Hydrogen peroxide-inducible genes activator [Escherichia c... 79.3 3e-20
P0ACQ4 Hydrogen peroxide-inducible genes activator [Escherichia c... 79.3 3e-20
Q9X725 Hydrogen peroxide-inducible genes activator [Dickeya chrys... 79.3 3e-20
P71318 Hydrogen peroxide-inducible genes activator [Pectobacteriu... 79.0 4e-20
P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis... 73.2 4e-18
P23841 HTH-type transcriptional regulator XapR [Escherichia coli ... 71.6 1e-17
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 70.9 2e-17
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 69.3 8e-17
P52669 HTH-type transcriptional regulator TtuA [Agrobacterium vitis] 69.3 8e-17
P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli ... 65.5 2e-15
P06614 HTH-type transcriptional regulator CysB [Salmonella typhim... 65.1 3e-15
P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumo... 64.7 3e-15
>P52684 Malonate utilization transcriptional regulator [Klebsiella
pneumoniae]
Length=308
Score = 251 bits (641), Expect = 6e-86
Identities = 128/301 (43%), Positives = 200/301 (66%), Gaps = 1/301 (0%)
Query 2 EIDEELTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNL 61
+I++E+T +KL +F+ FM GN+++TA M++S+VSVH+ALH+LE + CPLF H+GRNL
Sbjct 4 DINQEITFRKLSVFMMFMAKGNIARTAEAMKLSSVSVHRALHTLEEGVGCPLFVHKGRNL 63
Query 62 IPLKSAYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKL 121
+PL++A+ L E+ ++ + + TR+ AG L +G+LYSLT+ T+P +I +KL
Sbjct 64 LPLQAAWTLLEYCQDVISLMNRGLEATRKVAGVGQGRLRIGTLYSLTLETVPRIIMGMKL 123
Query 122 RRGELDIQLLLSSNLDLVKKLKSTELDAIIVALNE-TTRDPDFESLPMFEDNIYLAVNKH 180
RR EL++ L + SN L+ L+ LDAI++A NE + F+ +P+FED+I+LA
Sbjct 124 RRPELELDLTMGSNQMLLDMLEDDALDAILIATNEGEFNNTAFDVVPLFEDDIFLAAPAT 183
Query 181 SPLASLDEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVS 240
L + DL D F++L++GFAT F AG +P++ +V+DIF+++S+V
Sbjct 184 ERLDASRLADLRDYADRKFVSLAEGFATYAGFREAFHIAGFEPEIVTRVNDIFSMISLVQ 243
Query 241 TGVGLALLPGRISTIYESSVKLIPLQGSYQIKQEIGLVFLKSKERDPNLLALVAECRMFA 300
GVG ALLPGR+ +YE V+L+ L YQ++Q I +V+ +ERD +LLAL AE RM+A
Sbjct 244 AGVGFALLPGRMKKVYEKDVQLLKLAEPYQMRQLISIVYSHHRERDADLLALAAEGRMYA 303
Query 301 K 301
+
Sbjct 304 R 304
>Q8X4M5 HTH-type transcriptional regulator CynR [Escherichia coli
O157:H7]
Length=299
Score = 99.4 bits (246), Expect = 2e-27
Identities = 67/256 (26%), Positives = 125/256 (49%), Gaps = 3/256 (1%)
Query 10 KKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYV 69
+ + FLA +G+ ++ AS + +S ++ + + LE +L PLF GR + + V
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIHLTDAGEV 63
Query 70 LQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGELDIQ 129
++++ + +Q++ + A L + + T I +++ R + +Q
Sbjct 64 WRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPGITLQ 123
Query 130 LLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEI 189
L S + L ELD I P+ E++P+ +++ L V +H PLA+ +++
Sbjct 124 LQEMSQEKIEDLLCRDELDVGIAFA--PVHLPELEAIPLLTESLALVVAQHHPLAACEQV 181
Query 190 DLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALLP 249
LS L DE + LS FATR D EKAG+ P+V ++ + I ++ ++ LLP
Sbjct 182 ALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLLP 241
Query 250 GRISTIYESSVKLIPL 265
I+T ++ +K IPL
Sbjct 242 AAIATQHD-GLKAIPL 256
>P37499 Uncharacterized HTH-type transcriptional regulator YybE
[Bacillus subtilis (strain 168)]
Length=292
Score = 99.0 bits (245), Expect = 2e-27
Identities = 63/278 (23%), Positives = 140/278 (50%), Gaps = 4/278 (1%)
Query 10 KKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYV 69
++L+ F R +++K A + I+ ++ +++ LE+ L PLF +GR++ + ++
Sbjct 4 EQLEYFQTLARMQHVTKAAKSLSITQPALSRSIARLENHLGVPLFDRQGRSISLNQYGHI 63
Query 70 LQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGELDIQ 129
++++ + + V+ LG L++L +P++I + + Q
Sbjct 64 FLRRVQAMMKEYTEGKEEIQALLKPDQGVVSLGFLHTLGTTLVPDLIGSFQQEYPNISFQ 123
Query 130 LLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEI 189
L + + L+++LKS +LD ++A + + + ++ + +++ V PLAS + I
Sbjct 124 LKQNHSYWLLERLKSGDLDLCLLA--SIKPENPIQWIKLWSEELFVFVPNDHPLASRESI 181
Query 190 DLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALLP 249
L+ + E F+ L KG+A R D +FEKA I P + + + T V+ G+G+++LP
Sbjct 182 TLNEIAGERFILLKKGYALRMTVDELFEKANIQPNIMFEGEEATTAAGFVAAGLGISILP 241
Query 250 GRISTIYESSVKLIPLQGSYQIKQEIGLVFLKSKERDP 287
+ + +S + I + + ++ IG+ ++K + P
Sbjct 242 D-LKGLDQSKITKIRVSWP-ECQRVIGIAWIKGRFLSP 277
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 97.4 bits (241), Expect = 8e-27
Identities = 65/257 (25%), Positives = 123/257 (48%), Gaps = 4/257 (2%)
Query 10 KKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYV 69
+ + FLA +G+ ++ AS + +S ++ + + LE +L PLF GR + + V
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEV 63
Query 70 LQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGELDIQ 129
++++ + +Q++ + A L + + T I +++ R + +Q
Sbjct 64 WRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQ 123
Query 130 LLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEI 189
L S + L ELD I P+ E++P+ +++ L V +H PLA +++
Sbjct 124 LQEMSQEKIEDMLCRDELDVGIAFA--PVHSPELEAIPLLTESLALVVAQHHPLAVHEQV 181
Query 190 DLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALLP 249
LS L DE + LS FATR D EKAG+ P+V ++ + I ++ ++ LLP
Sbjct 182 ALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLLP 241
Query 250 GRISTIYE--SSVKLIP 264
I+T ++ ++ L P
Sbjct 242 AAIATQHDGLKAISLAP 258
>P0ACQ6 Hydrogen peroxide-inducible genes activator [Escherichia
coli O157:H7]
Length=305
Score = 79.3 bits (194), Expect = 3e-20
Identities = 60/281 (21%), Positives = 131/281 (47%), Gaps = 17/281 (6%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L+ +A + + + A +S ++ + LE L L + R ++ ++
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+L + + +++++ V + + LH+G + ++ +P++I L +L
Sbjct 61 GMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
++ L + L+ +L S +LD +I+AL + + F +P+F++ + LA+ + P A+
Sbjct 121 EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEA--FIEVPLFDEPMLLAIYEDHPWANR 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
+ + ++ L E L L G R+ + +AG D + + + TL +MV+ G G+
Sbjct 179 ECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGIT 238
Query 247 LLPG--------RISTIYESSVKLIPLQGSYQIKQEIGLVF 279
LLP R +Y +K P ++ IGLV+
Sbjct 239 LLPALAVPPERKRDGVVYLPCIKPEP-------RRTIGLVY 272
>P0ACQ5 Hydrogen peroxide-inducible genes activator [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=305
Score = 79.3 bits (194), Expect = 3e-20
Identities = 60/281 (21%), Positives = 131/281 (47%), Gaps = 17/281 (6%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L+ +A + + + A +S ++ + LE L L + R ++ ++
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+L + + +++++ V + + LH+G + ++ +P++I L +L
Sbjct 61 GMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
++ L + L+ +L S +LD +I+AL + + F +P+F++ + LA+ + P A+
Sbjct 121 EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEA--FIEVPLFDEPMLLAIYEDHPWANR 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
+ + ++ L E L L G R+ + +AG D + + + TL +MV+ G G+
Sbjct 179 ECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGIT 238
Query 247 LLPG--------RISTIYESSVKLIPLQGSYQIKQEIGLVF 279
LLP R +Y +K P ++ IGLV+
Sbjct 239 LLPALAVPPERKRDGVVYLPCIKPEP-------RRTIGLVY 272
>P0ACQ4 Hydrogen peroxide-inducible genes activator [Escherichia
coli (strain K12)]
Length=305
Score = 79.3 bits (194), Expect = 3e-20
Identities = 60/281 (21%), Positives = 131/281 (47%), Gaps = 17/281 (6%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L+ +A + + + A +S ++ + LE L L + R ++ ++
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+L + + +++++ V + + LH+G + ++ +P++I L +L
Sbjct 61 GMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPHIIPMLHQTFPKL 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
++ L + L+ +L S +LD +I+AL + + F +P+F++ + LA+ + P A+
Sbjct 121 EMYLHEAQTHQLLAQLDSGKLDCVILALVKESEA--FIEVPLFDEPMLLAIYEDHPWANR 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
+ + ++ L E L L G R+ + +AG D + + + TL +MV+ G G+
Sbjct 179 ECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGIT 238
Query 247 LLPG--------RISTIYESSVKLIPLQGSYQIKQEIGLVF 279
LLP R +Y +K P ++ IGLV+
Sbjct 239 LLPALAVPPERKRDGVVYLPCIKPEP-------RRTIGLVY 272
>Q9X725 Hydrogen peroxide-inducible genes activator [Dickeya chrysanthemi]
Length=305
Score = 79.3 bits (194), Expect = 3e-20
Identities = 53/243 (22%), Positives = 116/243 (48%), Gaps = 2/243 (1%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L+ +A + + + A +S ++ + LE L L + R ++ ++
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+L E + +++++ V + + LH+G + ++ +P +I L +L
Sbjct 61 GLLLVEQARTVLREVKVLKEMASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHRAFPKL 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
++ L + L+ +L S +LD I+A+ + + F +P+F++ + LA+ + P A+
Sbjct 121 EMYLHEAQTHQLLAQLDSGKLDCAILAMVKESEA--FIEVPLFDEPMKLAIYQDHPWANR 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
+ + +S L E L L G R+ + +AG D + + + TL +MV+ G G+
Sbjct 179 ERVAMSDLSGEKLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSGIT 238
Query 247 LLP 249
LLP
Sbjct 239 LLP 241
>P71318 Hydrogen peroxide-inducible genes activator [Pectobacterium
carotovorum subsp. carotovorum]
Length=302
Score = 79.0 bits (193), Expect = 4e-20
Identities = 53/243 (22%), Positives = 116/243 (48%), Gaps = 2/243 (1%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L+ +A + + + A +S ++ + LE L L + R ++ ++
Sbjct 1 MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+L E + +++++ V + + LH+G + ++ +P +I L +L
Sbjct 61 GLLLVEQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVGPYLLPQIIPMLHRTFPKL 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
++ L + L+ +L S +LD I+A+ + + F +P+F++ + LA+ + P A+
Sbjct 121 EMYLHEAQTHQLLAQLDSGKLDCAILAMVKESEA--FIEVPLFDEPMKLAIYQDHPWANR 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
+ + +S L E L L G R+ + +AG D + + + TL +MV+ G G+
Sbjct 179 ERVAMSDLAGEKLLMLEDGHCLRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSGIT 238
Query 247 LLP 249
LLP
Sbjct 239 LLP 241
>P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis
(strain 168)]
Length=296
Score = 73.2 bits (178), Expect = 4e-18
Identities = 53/259 (20%), Positives = 116/259 (45%), Gaps = 13/259 (5%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ LQ+FL R G++SK A + + +V + LE+ L+ LF R +
Sbjct 1 MNIQLLQVFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPP 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAK---VLHLGSLYSLTVNTIPNVISRLKLRR 123
+L +S K++ TI + R A G ++ L +GS+ + +P +++
Sbjct 61 GQILVSYSEKILH----TIEEARAAMGESSAPSGPLRIGSMETTAAVWLPQLLAHYNNLY 116
Query 124 GELDIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPL 183
+D+ L+ ++ + EL+ + + PD + ++ + L + P+
Sbjct 117 PNVDLNLVTGPTEQQIQAVLHYELNGAFI--SGPIEHPDLVQEKVLDEEMVLVTSASHPV 174
Query 184 ASLDEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGV 243
S + ++ +T L KG + R + + ++ G+ P ++ + ++ VS G+
Sbjct 175 IS----SIQDVQTQTMLVFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGL 230
Query 244 GLALLPGRISTIYESSVKL 262
G++LLP I +E ++
Sbjct 231 GISLLPRSIIASHEKEGRI 249
>P23841 HTH-type transcriptional regulator XapR [Escherichia coli
(strain K12)]
Length=294
Score = 71.6 bits (174), Expect = 1e-17
Identities = 64/286 (22%), Positives = 131/286 (46%), Gaps = 4/286 (1%)
Query 9 LKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAY 68
LK L+ FLA + + A+ + +S + + LE+ L LF R+++ +
Sbjct 9 LKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKELENQLGTQLFIRHSRSVVLTHAGK 68
Query 69 VLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGELDI 128
+L E S +L+ + + + + A + LG + + + V+ R +D+
Sbjct 69 ILMEESRRLLVNANNVLARIEQIGRGEAGRIELGVVGTAMWGRMRPVMRRFLRENPNVDV 128
Query 129 QLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDE 188
+ L+ ELDA I + T F SL + E +A+ + L+S
Sbjct 129 LFREKMPAMQMALLERRELDAGIWRM-ATEPPTGFTSLRLHESAFLVAMPEEHHLSSFST 187
Query 189 IDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALL 248
+ L L+DE F+T+ + + V ++ G P V +V++ T+++MVS G+G+ L+
Sbjct 188 VPLEALRDEYFVTMPPVYTDWDFLQRVCQQVGFSPVVIREVNEPQTVLAMVSMGIGITLI 247
Query 249 PGRISTIYESSVKLIPLQGSYQIKQEIGLVFLKSKERDPNLLALVA 294
+ + V PL+ +I ++ +V+ ++++ P ++ L+A
Sbjct 248 ADSYAQMNWPGVIFRPLK--QRIPADLYIVY-ETQQVTPAMVKLLA 290
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 70.9 bits (172), Expect = 2e-17
Identities = 57/260 (22%), Positives = 109/260 (42%), Gaps = 3/260 (1%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ ++ L FL R + +K + + +S ++ K + +LE L LF GR + +
Sbjct 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDA 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
+ + + ++++ ++ + + +G + P V+ + +
Sbjct 61 GHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNV 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
QL+ ++ + + + LD +V L + F S + ++ + L V+ LA
Sbjct 121 TFQLVEDGSIKVQEGVGDGSLDIGVVVL--PANEDIFHSFTIVKETLMLVVHPSHRLADE 178
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLA 246
E L LKDE F+ + F N KAG P + + S + MVS +G+
Sbjct 179 KECQLRELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEMVSANLGIG 238
Query 247 LLPGRIST-IYESSVKLIPL 265
LLP RI + VK+IPL
Sbjct 239 LLPERICRGLDPEKVKVIPL 258
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 69.3 bits (168), Expect = 8e-17
Identities = 57/271 (21%), Positives = 121/271 (45%), Gaps = 19/271 (7%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ L+ L+ F+A + N ++ A ++ S S+ + LE+ + PL + R +
Sbjct 1 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRDKRKV----- 55
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKV------LHLGSLYSLTVNTIPNVISRLK 120
L +QD + + + A A K+ L +G + S VN +P V+ +
Sbjct 56 --ALTAAGECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEVNLLPKVLPMFR 113
Query 121 LRRGELDIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKH 180
LR+ + I+L+ +K++ ELD + + P+ + L +F++ + + +
Sbjct 114 LRQPDTLIELVSLITTQQEEKIRRGELD--VGLMRHPVYSPEIDYLELFDEPLVVVLPVD 171
Query 181 SPLASLDEIDLSTLKDETFLTLSKGFATRNDSDLV---FEKAGIDPKVFLQVSDIFTLVS 237
PLA EI + L F++ ++ + + +V F + P + ++I ++
Sbjct 172 HPLAHEKEITAAQLDGVNFVSTDPVYSG-SLAPIVKAWFAQENSQPNIVQVATNILVTMN 230
Query 238 MVSTGVGLALLPGRISTIYESSVKLIPLQGS 268
+V G+G+ L+PG ++ V P+ G+
Sbjct 231 LVGMGLGVTLIPGYMNNFNTGQVVFRPIAGN 261
>P52669 HTH-type transcriptional regulator TtuA [Agrobacterium
vitis]
Length=304
Score = 69.3 bits (168), Expect = 8e-17
Identities = 56/262 (21%), Positives = 120/262 (46%), Gaps = 5/262 (2%)
Query 7 LTLKKLQIFLAFMRNGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKS 66
+ L++L+ F+A + + A +M I S+ + L LE +L L R++ +
Sbjct 1 MELEQLKCFVAAAEELHFGRAAQKMGILPASLGRHLRLLEESLGTRLMSRTTRSVALTED 60
Query 67 AYVLQEHSHKLVQDIVVTINKTREAAGFAAKVLHLGSLYSLTVNTIPNVISRLKLRRGEL 126
L E L+ + + R A VL +G++ S IP ++ + R +
Sbjct 61 GVALLEEVRPLLHRLQTLAEEFRSRKTQQATVLRIGAIDSAAAGLIPPLLHDFRERFPGI 120
Query 127 DIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASL 186
QL+ ++ L+ KL + LD + + + + + + ++ +A+ PLA+
Sbjct 121 ITQLVEDKSIRLIPKLIAGRLDIVFIRPRDGL-NRNLVVRTLTQETPVIALPVTHPLANR 179
Query 187 DEIDLSTLKDETFLTLSKGFATRNDSDL---VFEKAGIDPKVFLQVSDIFTLVSMVSTGV 243
+ I + L++E + + + + DL +FE AG+ P++ + T++++V+ G+
Sbjct 180 ERISVDELREEPLIVPERR-SRPHSYDLTMKLFEDAGLHPRIAQTADEKQTIINLVAAGI 238
Query 244 GLALLPGRISTIYESSVKLIPL 265
G A++P + + V +PL
Sbjct 239 GSAIVPRWTAKLAVFGVTFVPL 260
>P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli
(strain K12)]
Length=324
Score = 65.5 bits (158), Expect = 2e-15
Identities = 53/233 (23%), Positives = 97/233 (42%), Gaps = 10/233 (4%)
Query 21 NGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYVLQEHSHKLVQD 80
N N+S TA + S + K + LE L +F G++L + A + ++ ++
Sbjct 16 NLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVTPA---GQEIIRIARE 72
Query 81 IVVTINKTREAAGFAAKVLHLGSLYSLTVNT-----IPNVISRLKLRRGELDIQLLLSSN 135
++ ++ + AG GSLY T +T +PNVI R + + + S
Sbjct 73 VLSKVDAIKSVAGEHTWP-DKGSLYIATTHTQARYALPNVIKGFIERYPRVSLHMHQGSP 131
Query 136 LDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEIDLSTLK 195
+ + D +A D LP + N + V PLA I + L
Sbjct 132 TQIADAVSKGNAD-FAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAGKKAITIEELA 190
Query 196 DETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALL 248
+T + GF R++ D F +AG+ P++ +D + + V G+G+ ++
Sbjct 191 QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVI 243
>P06614 HTH-type transcriptional regulator CysB [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=324
Score = 65.1 bits (157), Expect = 3e-15
Identities = 51/233 (22%), Positives = 98/233 (42%), Gaps = 10/233 (4%)
Query 21 NGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYVLQEHSHKLVQD 80
N N+S TA + S + K + LE L +F G++L + A + ++ ++
Sbjct 16 NLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPA---GQEIIRIARE 72
Query 81 IVVTINKTREAAGFAAKVLHLGSLYSLTVNT-----IPNVISRLKLRRGELDIQLLLSSN 135
++ ++ + AG GSLY T +T +P VI R + + + S
Sbjct 73 VLSKVDAIKSVAGEHTWP-DKGSLYIATTHTQARYALPGVIKGFIERYPRVSLHMHQGSP 131
Query 136 LDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEIDLSTLK 195
+ + + D +A D LP + N + V PLA+ + + L
Sbjct 132 TQIAEAVSKGNAD-FAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAATSSVTIEALA 190
Query 196 DETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALL 248
+T + GF R++ D F +AG+ P++ +D + + V G+G+ ++
Sbjct 191 QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVI 243
>P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumoniae]
Length=324
Score = 64.7 bits (156), Expect = 3e-15
Identities = 51/233 (22%), Positives = 98/233 (42%), Gaps = 10/233 (4%)
Query 21 NGNLSKTASEMEISNVSVHKALHSLESALRCPLFKHEGRNLIPLKSAYVLQEHSHKLVQD 80
N N+S TA + S + K + LE L +F G++L + A + ++ ++
Sbjct 16 NLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPA---GQEIIRIARE 72
Query 81 IVVTINKTREAAGFAAKVLHLGSLYSLTVNT-----IPNVISRLKLRRGELDIQLLLSSN 135
++ ++ + AG GSLY T +T +P VI R + + + S
Sbjct 73 VLSKVDAIKSVAGEHTWP-DKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSP 131
Query 136 LDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLASLDEIDLSTLK 195
+ + + D +A D LP + N + V PLA+ + + L
Sbjct 132 TQIAEAVSKGNAD-FAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELA 190
Query 196 DETFLTLSKGFATRNDSDLVFEKAGIDPKVFLQVSDIFTLVSMVSTGVGLALL 248
+T + GF R++ D F +AG+ P++ +D + + V G+G+ ++
Sbjct 191 QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVI 243
Score = 17.7 bits (34), Expect = 5.8
Identities = 14/65 (22%), Positives = 28/65 (43%), Gaps = 1/65 (2%)
Query 126 LDIQLLLSSNLDLVKKLKSTELDAIIVALNETTRDPDFESLPMFEDNIYLAVNKHSPLAS 185
L + ++ S +D V +LDA + + TT+ F +Y + + +P +
Sbjct 238 LGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTK-IGFRRSTFLRSYMYDFIQRFAPHLT 296
Query 186 LDEID 190
D +D
Sbjct 297 RDVVD 301
Lambda K H a alpha
0.321 0.137 0.371 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1148661
Database: c62010ca54b8248dd060319590ca876d.SwissProt.fasta
Posted date: Jun 2, 2024 4:10 AM
Number of letters in database: 5,183
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
