BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6f1bcb647e1223c12141efcf9c2d9b6f.SwissProt.fasta
           1 sequences; 317 total letters



Query= ACIAD1779

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P23485 Ferric citrate uptake sigma factor regulator FecR [Escheri...  130     5e-40


>P23485 Ferric citrate uptake sigma factor regulator FecR [Escherichia 
coli (strain K12)]
Length=317

 Score = 130 bits (326),  Expect = 5e-40
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 7/307 (2%)

Query  5    NERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSH  64
            + R Q L  A  W   +  + ++  +   ++QW  + Q +Q  WQQ   L  +   +P  
Sbjct  7    DSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQLGGVPGD  66

Query  65   IAIPIIQKQK---SHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPDG  121
            +A   +   +    H    L++L        L+     +   ADYR         +L DG
Sbjct  67   VASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSRQQLEDG  126

Query  122  GKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLV  181
              + LN+ +A DV++ A +R + L  GEI I T  D   RPF V T+QGQ  ALGT++ V
Sbjct  127  SLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTV  186

Query  182  KIDQKSSQIAVLKGAVKV-QPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL  240
            +     +Q+ V + AV+V       Q  I+  G+ +  +     +V+  D     WTK +
Sbjct  187  RQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDI  246

Query  241  IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAI---D  297
            +  ++ PL E +  L  Y++ ++  DP V+ +++SGTFP+ N   +  ++  T  +    
Sbjct  247  LSFSDKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTLPVKIQS  306

Query  298  VDRYAMN  304
            + RY +N
Sbjct  307  ITRYWIN  313



Lambda      K        H        a         alpha
   0.320    0.135    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83230


  Database: 6f1bcb647e1223c12141efcf9c2d9b6f.SwissProt.fasta
    Posted date:  May 11, 2024  6:10 AM
  Number of letters in database: 317
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40