BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d0d39581f798aefd7cc7e09e316ec110.TrEMBL.fasta
17 sequences; 5,419 total letters
Query= ACIAD1779
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SFP5 Transmembrane sensor [Acinetobacter sp] 632 0.0
Q6FBE6 Membrane bound regulator in multi-component regulatory sys... 632 0.0
A0A3A8F1D9 FecR family protein [Acinetobacter guerrae] 389 1e-139
S3N3T7 Transmembrane sensor [Acinetobacter rudis CIP 110305] 353 8e-126
N9QAL3 FecR protein domain-containing protein [Acinetobacter sp. ... 305 5e-107
A0A240EDF4 FecR family protein [Acinetobacter puyangensis] 296 2e-103
A0A1B2LZE3 Histidine kinase [Acinetobacter larvae] 296 3e-103
A0A1E7RDB1 DUF4880 domain-containing protein [Acinetobacter qingf... 292 1e-101
R9AZN4 FecR protein domain-containing protein [Acinetobacter sp. ... 283 5e-98
A0A1Z9Z1I7 Histidine kinase [Acinetobacter populi] 282 7e-98
A0A6A1RPW5 DUF4880 domain-containing protein [Acinetobacter guill... 276 3e-95
Q52209 PupR protein [Pseudomonas putida] 115 4e-33
Q8L1U8 RhuR [Bordetella avium] 87.4 4e-23
Q79AD3 HasS protein [Serratia marcescens] 71.6 2e-17
Q93JM7 Regulatory protein [Ralstonia solanacearum] 69.3 1e-16
B3Y996 Anti-sigma factor [Ralstonia solanacearum] 68.9 1e-16
Q9L429 Putative inner membrane sensor [Bordetella bronchiseptica] 67.4 5e-16
>A0A7G2SFP5 Transmembrane sensor [Acinetobacter sp]
Length=313
Score = 632 bits (1629), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%)
Query 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS
Sbjct 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
Query 61 LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD 120
LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD
Sbjct 61 LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD 120
Query 121 GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL 180
GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL
Sbjct 121 GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL 180
Query 181 VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL 240
VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL
Sbjct 181 VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL 240
Query 241 IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR 300
IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR
Sbjct 241 IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR 300
Query 301 YAMNHIIRIRQKK 313
YAMNHIIRIRQKK
Sbjct 301 YAMNHIIRIRQKK 313
>Q6FBE6 Membrane bound regulator in multi-component regulatory
system with cytoplasmic FecI (Sigma factor) and FecA (Outer
membrane receptor) [Acinetobacter baylyi (strain ATCC 33305
/ BD413 / ADP1)]
Length=313
Score = 632 bits (1629), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%)
Query 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS
Sbjct 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
Query 61 LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD 120
LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD
Sbjct 61 LPSHIAIPIIQKQKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPD 120
Query 121 GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL 180
GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL
Sbjct 121 GGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYL 180
Query 181 VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL 240
VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL
Sbjct 181 VKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL 240
Query 241 IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR 300
IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR
Sbjct 241 IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR 300
Query 301 YAMNHIIRIRQKK 313
YAMNHIIRIRQKK
Sbjct 301 YAMNHIIRIRQKK 313
>A0A3A8F1D9 FecR family protein [Acinetobacter guerrae]
Length=319
Score = 389 bits (998), Expect = 1e-139
Identities = 183/311 (59%), Positives = 246/311 (79%), Gaps = 2/311 (1%)
Query 4 QNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPS 63
++ + +IL++AVEWLM++KQ L E E + +W+NRS+LHQ IW +A +LE+KFQ LP
Sbjct 3 KSRKSEILDQAVEWLMRIKQGALTESEYQQLVEWQNRSRLHQKIWHKAIELEQKFQQLPP 62
Query 64 HIAIPIIQKQ--KSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPDG 121
+IA+P+IQKQ KSH + WL+VL LP + L+Y +NQQQQWTADYR G TV+LPDG
Sbjct 63 NIAMPVIQKQPLKSHLNNWLLVLGILPTVYLIYWLNQQQQWTADYRCGTGEQTTVQLPDG 122
Query 122 GKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLV 181
GKI+LN+N+AIDVKYTA++R+IILRKGEIWIET HD ++RPF VYTQQGQAQALGTKYLV
Sbjct 123 GKIVLNTNSAIDVKYTAEQRNIILRKGEIWIETHHDSQHRPFIVYTQQGQAQALGTKYLV 182
Query 182 KIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGLI 241
K+DQ SS +AV KGAVK+Q N+ I+ GQ+ N+Y + + + FD S+ WTKGL+
Sbjct 183 KMDQDSSFVAVEKGAVKIQAHANDHPQILNAGQQTVFNRYTIQTTQDFDVSQFAWTKGLL 242
Query 242 MVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDRY 301
MV+E+PLS+FV++L PYQ +IYLD ++ NI+ISGT+P+ N+ Q Y MLE+TY++++D Y
Sbjct 243 MVDEMPLSQFVKRLEPYQKGVIYLDHDIKNIRISGTYPVDNLQQAYTMLEHTYSVEIDHY 302
Query 302 AMNHIIRIRQK 312
AMNH++RIR K
Sbjct 303 AMNHVVRIRSK 313
>S3N3T7 Transmembrane sensor [Acinetobacter rudis CIP 110305]
Length=315
Score = 353 bits (906), Expect = 8e-126
Identities = 169/315 (54%), Positives = 234/315 (74%), Gaps = 2/315 (1%)
Query 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
M E+ I+E+AVEWL+ +KQ L E E +FEQW ++S LHQ IWQQ LE+KF+
Sbjct 1 MFKSTEKSVIVEQAVEWLLLIKQGKLTEFEKNQFEQWLSQSHLHQKIWQQTIVLEQKFKQ 60
Query 61 LPSHIAIPIIQKQ--KSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKL 118
LP+ IA+P+IQ+Q K+H WL++L L Y++N+QQQWTADYRNG A +TV L
Sbjct 61 LPAEIALPVIQQQPSKTHNGHWLLLLGSFSALWFAYLLNEQQQWTADYRNGKGAAKTVLL 120
Query 119 PDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTK 178
PDGG I+L++N+AIDV+YT+++R IILRKGEIWIET+ D +RPF V TQ GQAQALGT+
Sbjct 121 PDGGSILLHANSAIDVQYTSQQRKIILRKGEIWIETRPDAAHRPFVVSTQYGQAQALGTQ 180
Query 179 YLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTK 238
Y VKI+QK + +AV KGAVKVQP+ + QY ++ G++I NQ + +VE D +++ WTK
Sbjct 181 YSVKIEQKEAYVAVEKGAVKVQPQNSTQYKVVHVGEQIRFNQQKIGAVEALDITQLAWTK 240
Query 239 GLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDV 298
GL+MV+++PLS+F+++L+P+ A IYL+ +V +KISGT+P NM+QLYEMLE Y I V
Sbjct 241 GLMMVDDMPLSQFIERLKPFHRAFIYLERDVEQLKISGTYPTDNMSQLYEMLEQNYQIQV 300
Query 299 DRYAMNHIIRIRQKK 313
++YA N ++ I KK
Sbjct 301 NQYAANRMVSISAKK 315
>N9QAL3 FecR protein domain-containing protein [Acinetobacter
sp. NIPH 2100]
Length=316
Score = 305 bits (782), Expect = 5e-107
Identities = 147/312 (47%), Positives = 216/312 (69%), Gaps = 4/312 (1%)
Query 6 ERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHI 65
++ QILE+A+ WLM+M++K L+ EL + ++W+ +S LHQ +WQ+A L+ KF +P +
Sbjct 5 DKQQILEQAIAWLMRMQEKKLSLEELEQLQKWQQQSSLHQKVWQKALLLQTKFSDVPIEV 64
Query 66 AIPIIQK----QKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPDG 121
AIP++QK K + +L +L+ P+ LY+ +QQQQW ADYR+G +++ LPDG
Sbjct 65 AIPVVQKVSYSSKQYDKKYLWLLALFPIFSGLYLTSQQQQWFADYRSGIGERKSIVLPDG 124
Query 122 GKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLV 181
GK++LN+ +AIDV+YT +R +ILRKGEIWIETQHD NRPF V TQQG QALGTKYLV
Sbjct 125 GKLLLNAASAIDVEYTDHQRRVILRKGEIWIETQHDSFNRPFIVTTQQGTVQALGTKYLV 184
Query 182 KIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGLI 241
K+ +SS + V KG V V P + Q I+ Q++S ++ + ++ D S I WTKG +
Sbjct 185 KMMPESSYVTVTKGKVLVSPYQSQQKQIVEIKQQLSFDKQKIDKIKPLDESHIAWTKGFL 244
Query 242 MVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDRY 301
MVN++ + EF+ +L+PYQ LI +D E+ NIKISGT+PI ++ ++Y MLE TYA+ V++Y
Sbjct 245 MVNDLTVKEFISRLQPYQKGLIRVDAEIENIKISGTYPIDDLPKVYAMLEQTYALKVEQY 304
Query 302 AMNHIIRIRQKK 313
A + I+ K
Sbjct 305 AGGYWTMIQSAK 316
>A0A240EDF4 FecR family protein [Acinetobacter puyangensis]
Length=318
Score = 296 bits (759), Expect = 2e-103
Identities = 145/319 (45%), Positives = 214/319 (67%), Gaps = 9/319 (3%)
Query 2 LNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSL 61
+ Q R +I+EEA EWLM+M+++ L+ E + ++W+ +S +HQ +WQ A +L+ KF +
Sbjct 1 MQQATRQKIIEEASEWLMRMQEQELSPQEQQQLQEWQQQSPMHQKVWQNALKLQTKFSDV 60
Query 62 PSHIAIPIIQK------QKSHPD-IWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQ 114
P + P++ K Q+SH IWL+ + LP L LY N QQQW AD+R+ +
Sbjct 61 PLDLLHPVLDKLDSANDQQSHKKYIWLLAI--LPALSALYYANDQQQWLADHRSAVGERK 118
Query 115 TVKLPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQA 174
T+ LPDGGKIILN +AIDV Y+ K+R ++LRKGEIWIETQ D RPF V T+QG AQA
Sbjct 119 TITLPDGGKIILNGRSAIDVDYSDKQRTVVLRKGEIWIETQPDSLKRPFIVETKQGTAQA 178
Query 175 LGTKYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEI 234
LGT+YLV++ K + +AV +GAVK++ + N Q I+ Q+ +Q+++ +V D ++
Sbjct 179 LGTQYLVRMQPKQTFVAVHRGAVKIRTQVNQQEAILNLNQQAYFDQHHIDTVHPMDVNQY 238
Query 235 GWTKGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTY 294
WTKG +MVNE+PL +F+Q+L+PYQ I LD + +IKISGT+P+ ++ Q+Y ML TY
Sbjct 239 SWTKGFLMVNEMPLKDFIQRLQPYQKGKIQLDRHIQDIKISGTYPVDDLQQIYTMLAQTY 298
Query 295 AIDVDRYAMNHIIRIRQKK 313
+D+D YA + +RI KK
Sbjct 299 HLDIDIYAGGYWVRILPKK 317
>A0A1B2LZE3 Histidine kinase [Acinetobacter larvae]
Length=316
Score = 296 bits (757), Expect = 3e-103
Identities = 141/315 (45%), Positives = 214/315 (68%), Gaps = 4/315 (1%)
Query 1 MLNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS 60
M ++ E+ I+E+A W + ++Q+ L+ E +FEQW +S H WQ QL++KFQ
Sbjct 1 MYSKQEKINIIEQAAAWALLVQQRDLSSAEQQQFEQWLQQSTFHAQAWQNIEQLQQKFQQ 60
Query 61 LPSHIAIPIIQKQKSHP---DIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVK 117
LP+ IA P+I+KQ+++ LM+L+ LP L +LY +N QQW+ADYR +TV+
Sbjct 61 LPTEIAAPVIKKQRTYKVEVKHLLMLLATLPSLLILYYLNSIQQWSADYRTTTGERKTVQ 120
Query 118 LPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGT 177
L DGG+I+LN+NTAID+ Y+ R IILRKGEIWIETQHDV RPF V T QG AQALGT
Sbjct 121 LEDGGRILLNANTAIDIDYSRNSRSIILRKGEIWIETQHDVLQRPFWVKTPQGAAQALGT 180
Query 178 KYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWT 237
KYLVKI+Q+ + +AV +GAV +Q + Q ++ GQ++ N + VE ++ WT
Sbjct 181 KYLVKIEQQQAYVAVQQGAVAIQ-SLSGQQQYLSAGQQVYFNVDQIKKVEQLHPQQLSWT 239
Query 238 KGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAID 297
+G ++V ++PL +FV++++PYQ IYLDP + ++ISG +PI ++A+LY+ML++TY ++
Sbjct 240 QGFLLVKDMPLQQFVERIKPYQKGYIYLDPALQQLRISGNYPIDDLAKLYKMLQHTYGVE 299
Query 298 VDRYAMNHIIRIRQK 312
+ Y H + I+++
Sbjct 300 ISHYMHGHWVYIQKQ 314
>A0A1E7RDB1 DUF4880 domain-containing protein [Acinetobacter qingfengensis]
Length=317
Score = 292 bits (747), Expect = 1e-101
Identities = 143/315 (45%), Positives = 210/315 (67%), Gaps = 8/315 (3%)
Query 4 QNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPS 63
+ ++ QILE+A +WL ++++ L++ E + W+N+S HQ IW+ A L K LP
Sbjct 5 KRQKQQILEQASQWLTRLQEGNLSDEEKKQLLNWQNQSPYHQKIWKTALDLHHKLSELPQ 64
Query 64 HIAIPIIQKQKSHPD------IWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVK 117
+ +P+I K + +WL L+ LP+L +Y N+QQQW ADYR+ TV
Sbjct 65 DVTLPVIHKLRKEQTTSYKKYVWL--LAALPVLSAIYYGNEQQQWLADYRSPVGQQTTVH 122
Query 118 LPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGT 177
LPDGGKIILN +AIDV Y+ ++R IILRKGEIWIET D RPF V T+QG AQALGT
Sbjct 123 LPDGGKIILNGLSAIDVDYSQQQRTIILRKGEIWIETHPDQLKRPFIVQTKQGSAQALGT 182
Query 178 KYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWT 237
+YLV+++ + S +AV KGAVK+ + Q I+ Q+ +QY L++ + D +EI WT
Sbjct 183 QYLVRMEAQQSFVAVNKGAVKITTLNSKQSKILHSHQQTYFSQYTLNTPQNIDMAEIAWT 242
Query 238 KGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAID 297
KG IMVN++PL +F+Q+L+PYQ +I++DP +++IKISGT+PI ++ +Y ML +TYA+D
Sbjct 243 KGFIMVNDLPLQQFIQRLKPYQKGIIHIDPAIASIKISGTYPIHDLDGIYSMLAHTYALD 302
Query 298 VDRYAMNHIIRIRQK 312
+ YA ++ I I+ K
Sbjct 303 IHDYANHYFIHIKAK 317
>R9AZN4 FecR protein domain-containing protein [Acinetobacter
sp. CIP 110321]
Length=316
Score = 283 bits (723), Expect = 5e-98
Identities = 135/312 (43%), Positives = 210/312 (67%), Gaps = 4/312 (1%)
Query 6 ERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHI 65
++ QILE+A+EWL++M++ L+ E+ + +QW+ +S +HQ +W++A L+ KF +P +
Sbjct 5 DKQQILEQAIEWLIRMQESELSSDEIEQLQQWQLQSAVHQKVWEKALLLQTKFSDVPIDL 64
Query 66 AIPIIQK----QKSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPDG 121
IP++QK K + +L +L+ +PL LY +QQ QW ADYR+G +++ LPDG
Sbjct 65 VIPVVQKVSYSSKQNYKKYLWLLAFVPLCSSLYFSSQQMQWFADYRSGTGDRKSITLPDG 124
Query 122 GKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLV 181
G I+LN+ +AIDV+YT ++R IILRKGEIWIET+HD NRPF V T QG AQALGTKY+V
Sbjct 125 GIILLNAASAIDVEYTEQQRTIILRKGEIWIETRHDQLNRPFVVNTPQGSAQALGTKYMV 184
Query 182 KIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGLI 241
K+ + S + V +G V+V + + Q I+ Q++S N + + + ++ S I WTKG +
Sbjct 185 KMTPEYSMVTVTQGKVRVSAQKSKQNQIVEAEQQLSFNAHAIDKTKNYEESSIAWTKGFL 244
Query 242 MVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDRY 301
MVNE+ L EFV +L+PYQ +I + +V NIKISGT+PI ++ ++Y ML TY + + +Y
Sbjct 245 MVNEMSLKEFVARLQPYQKGMIRTNTDVENIKISGTYPIDHLEKVYAMLAQTYDLKIKQY 304
Query 302 AMNHIIRIRQKK 313
+ I+ ++
Sbjct 305 VGGYFTHIQAEE 316
>A0A1Z9Z1I7 Histidine kinase [Acinetobacter populi]
Length=317
Score = 282 bits (722), Expect = 7e-98
Identities = 138/316 (44%), Positives = 210/316 (66%), Gaps = 8/316 (3%)
Query 4 QNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPS 63
Q +R +I+++A EWL+++++ L+ E + +QW+ +S LHQ IW++A QL+ KF L
Sbjct 3 QADRKEIIKQASEWLVRLQEGDLSAEERQQLQQWQQQSTLHQRIWEKALQLQGKFADLSV 62
Query 64 HIAIPIIQKQK------SHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVK 117
+ +P++ K SH +L +L+ +P L LY N++QQW ADYR+ +T++
Sbjct 63 EVVLPVMDKMPQTNGHHSHKK-YLWLLAIIPALSALYYGNEKQQWLADYRSSVGERKTIQ 121
Query 118 LPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGT 177
LPDGG II+N+ +AID+KY+ ++R I+LRKGEIWIET HD RPF V T QG AQALGT
Sbjct 122 LPDGGTIIMNARSAIDIKYSGQQRKIVLRKGEIWIETHHDALKRPFLVETSQGTAQALGT 181
Query 178 KYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWT 237
+YLV+++ + + +AV +GAVKVQ Q I+ Q+ +Q + D SE WT
Sbjct 182 QYLVRLEPRQTFVAVNQGAVKVQ-SLKGQAQILNLHQQAYFDQTKIEQAADLDTSEYSWT 240
Query 238 KGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAID 297
KG +MVNE+ L +FV +L+PYQ IYL+P++ NIKISGT+PI ++ ++Y ML TY ++
Sbjct 241 KGFLMVNELSLKDFVDRLKPYQKGAIYLEPQLDNIKISGTYPIDDLQRVYSMLAQTYHLE 300
Query 298 VDRYAMNHIIRIRQKK 313
+D YA + + I++ K
Sbjct 301 IDVYAEGYWVNIQKPK 316
>A0A6A1RPW5 DUF4880 domain-containing protein [Acinetobacter guillouiae]
Length=335
Score = 276 bits (706), Expect = 3e-95
Identities = 140/317 (44%), Positives = 210/317 (66%), Gaps = 7/317 (2%)
Query 3 NQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLP 62
+Q + QIL EA +W M++ Q L+ EL + + W+ +S +H +WQ+ QL F LP
Sbjct 20 DQQQTQQILNEAADWCMRLSQGELSPQELQQLQIWQQQSSVHAKVWQKMQQLHHTFDQLP 79
Query 63 SHIAIPIIQKQ-----KSHPDIWLMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAPQTVK 117
+ +A PI+++ K H ++ VL+CL LL L Y +NQQQQWTADYR + +K
Sbjct 80 TEVARPILKQSTSFSWKKHRH-YMWVLACLSLLYLGYSLNQQQQWTADYRTKVGEIEKIK 138
Query 118 LPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGT 177
LPDGG++ L+S +AID+ Y+AK+R+++LRKG+IWI+T D + RPF V TQ GQ QALGT
Sbjct 139 LPDGGELYLDSASAIDLDYSAKQRNVVLRKGQIWIKTAKDQQQRPFFVQTQHGQMQALGT 198
Query 178 KYLVKIDQKSSQIAVLKGAVKVQPKTN-NQYVIITKGQKISINQYNLHSVEYFDHSEIGW 236
++ V++D K S + V +GAVK+QP+ + Q VI+ GQ +N+ + V D + W
Sbjct 199 EFSVELDPKQSWVFVEQGAVKLQPQRHPTQTVIVAAGQLSHLNREQVAEVISADLTRNSW 258
Query 237 TKGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAI 296
T+G ++VN++PLSEFVQ++ YQ I LD +++ IKISGT+PI ++ LY ML TY +
Sbjct 259 TQGWMIVNDLPLSEFVQRIGKYQKGYIALDDDIAQIKISGTYPINDLPTLYSMLAVTYKL 318
Query 297 DVDRYAMNHIIRIRQKK 313
D++RYA + + I +KK
Sbjct 319 DINRYAQGYWVSIGEKK 335
>Q52209 PupR protein [Pseudomonas putida]
Length=324
Score = 115 bits (287), Expect = 4e-33
Identities = 68/301 (23%), Positives = 148/301 (49%), Gaps = 8/301 (3%)
Query 9 QILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHIAIP 68
++ E+A+ W +++++ ++ L W+ LH+ WQ+ ++ + + S P
Sbjct 12 EVAEQAMHWHLELQEPAVSAATLAACMSWRQAHPLHEHAWQRTQVFAQRLREMRSPGQRP 71
Query 69 IIQKQKSHPDIWLMVLSCLPLL-----GLLYVMNQQ--QQWTADYRNGFHAPQTVKLPDG 121
+ L L LL G Y+ + Q W ADY + + + L DG
Sbjct 72 LAHAALRPQQSRRTALKQLSLLMAAGAGAWYLKDAALVQDWRADYHSRIGEQRRLTLADG 131
Query 122 GKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLV 181
++ LN+++A++V + + R + L +GE+ I +RP V T+ G+ ++ ++ V
Sbjct 132 TQVQLNTDSALNVAFDQQARRLRLVRGEMLITRPALADSRPLWVDTEHGRLESTLAQFNV 191
Query 182 KIDQKSSQIAVLKGAVKVQPKTN-NQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGL 240
++ + +Q V +G+V +QP + +++ G++ S NQ L + + W++G+
Sbjct 192 RLHGQHTQATVYQGSVALQPALHAYPPILLGAGEQASFNQQGLLARQAVAAVAPAWSQGM 251
Query 241 IMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDVDR 300
++ PL+ F++ L Y+ + DP ++ +++SGTFP+ N ++ + T ++V
Sbjct 252 LVAQGQPLAAFIEDLARYRRGHLACDPALAGLRVSGTFPLENTDKIIAAVAETLQLEVQH 311
Query 301 Y 301
+
Sbjct 312 F 312
>Q8L1U8 RhuR [Bordetella avium]
Length=307
Score = 87.4 bits (215), Expect = 4e-23
Identities = 66/296 (22%), Positives = 124/296 (42%), Gaps = 17/296 (6%)
Query 9 QILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHIAIP 68
++ EA WLM + + + E+W+ H+ WQ A ++ + LP +
Sbjct 10 RVAREAARWLMHLASGQASADDAAACERWRASDTRHEQAWQHAQRVNDLLGGLPPQLLHA 69
Query 69 IIQKQKSHPDIWLMVLSCL------PLLGLLYVMNQQQQWTADYRNGFHAPQTVKLPDGG 122
+ + +H L + + P + ++ ADYR+ + + LP G
Sbjct 70 TLGRP-AHKTRRLALKAMAGMALGTPAAWAAWRGGRETGLLADYRSAPGERRDIVLPGGT 128
Query 123 KIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGTKYLVK 182
+ LNS +A+D+ +LR GE+++ + QGQ A +Y ++
Sbjct 129 FVSLNSGSALDLSDDGA----VLRAGEVYVRA-----GLRCVAHAPQGQVTASHARYALR 179
Query 183 IDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEIGWTKGLIM 242
+D + +I V +G V+V+P + Q + Y + SE W +G++
Sbjct 180 LDAEGCRIEVYEGQVQVRPALGVAATLAAP-QAACFDAYTVRLRSAALESEPAWLRGVLH 238
Query 243 VNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAIDV 298
VN +PL+ F +L Y+ L+ V+ + +SGTF + N + L + V
Sbjct 239 VNAMPLAAFAAELGRYRRGLVRCAQAVAALPVSGTFQLDNTEGILRALPALLPVSV 294
>Q79AD3 HasS protein [Serratia marcescens]
Length=317
Score = 71.6 bits (174), Expect = 2e-17
Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 25/290 (9%)
Query 9 QILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHIAIP 68
Q ++A W + + + L + W H + +QA L LP
Sbjct 7 QARQQAAAWAVSLAEGALPADRRRALDAWLAADPQHPAALRQARLLWTTLGQLPPE---- 62
Query 69 IIQKQKSHPDIWLM------------VLSCLPLLGLLYVMNQQQQWT---ADYRNGFHAP 113
Q+Q P + + V + + L V W ADY+
Sbjct 63 --QRQALQPQVAALKTPSRHRWPRWAVAAAVALAVSFGVYRGPDLWIRLQADYQTVRGEV 120
Query 114 QTVKLPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIW--IETQHDVKNRPFTVYTQQGQ 171
+ V LPDG ++ L+S +AI + Y+A +R + L G + + ++RPF V + G
Sbjct 121 REVALPDGSRVALDSGSAIALAYSADERKVRLLSGAAYFIVAPLGGAESRPFRVEAKNGV 180
Query 172 AQALGTKYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDH 231
QALGT++ V ++ ++V + +V+V + + +++ + Q L
Sbjct 181 TQALGTEFSVARTEQGVDVSVHQHSVRVTLERGERSLVVAQRQAAHYRNGQLQLTRQ-TA 239
Query 232 SEIGWTKGLIMVNEIPLSEFVQKLRPYQ-SALIYLDPEVSNIKISGTFPI 280
+ W +G ++++ PL++ + +L Y+ + ++ ++P + +SG F +
Sbjct 240 GDDAWRRGWLVIDRQPLTQALAQLNRYRGTRIVAVNPALRTRTVSGVFAL 289
>Q93JM7 Regulatory protein [Ralstonia solanacearum]
Length=316
Score = 69.3 bits (168), Expect = 1e-16
Identities = 72/325 (22%), Positives = 136/325 (42%), Gaps = 29/325 (9%)
Query 2 LNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS- 60
+ Q +I E+A++WL+ ++ +E + F W+ + H + +LE +
Sbjct 1 MKQPLNDRIAEQAIQWLVLLRSGMASEADRQRFAAWREANPAHA---EAVRRLEGGLGAV 57
Query 61 -LPSHIAIPIIQKQKSH------PDIWLMVLSCLPLLG--------LLYVMNQQQQWTAD 105
LPS +P+ +Q + P + L+G L+ + AD
Sbjct 58 ALPS---VPMPHRQAARRLLDTPPSSPMQHARRALLVGGLGAGVAALVDLHMPLSDLAAD 114
Query 106 YRNGFHAPQTVKLPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTV 165
R + KL G ++ LN+ +A+DV D+ LR+G + + R V
Sbjct 115 MRTATSERRDFKLAGGHELRLNARSAVDVVPVVHGYDVRLRRGSVLAMAGAWERLR---V 171
Query 166 YTQQGQAQALGTKYLVKIDQKSSQI-AVLKGAVKVQPKTNNQYVIITKGQKISINQYNLH 224
+ G A+ +D + I AVL G+ + ++ G +
Sbjct 172 TSPVGTAECARGMLCASLDAQGRMIVAVLDGSAALSAP-EGAVTVVHSGGVHRFGPAGIE 230
Query 225 SVEYFDHSEIGWTKGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMA 284
+ S WT+G++ V PL++ + LRPY + +I + P +++ ++G FP+ +
Sbjct 231 PLRRSARSVAAWTQGMVEVEHRPLADVIDALRPYHAGMIEVQPSAASMHVTGRFPL-DPR 289
Query 285 QLYEMLENTYAIDVDRYAMNHIIRI 309
+ +ML +T +DV RY +RI
Sbjct 290 RALQMLVDTLPLDV-RYIAGLWVRI 313
>B3Y996 Anti-sigma factor [Ralstonia solanacearum]
Length=316
Score = 68.9 bits (167), Expect = 1e-16
Identities = 72/325 (22%), Positives = 136/325 (42%), Gaps = 29/325 (9%)
Query 2 LNQNERHQILEEAVEWLMQMKQKPLNEIELLEFEQWKNRSQLHQSIWQQAYQLEEKFQS- 60
+ Q +I E+A++WL+ ++ +E + F W+ + H + +LE +
Sbjct 1 MKQPLNDRIAEQAIQWLVLLRSGMASEADRQRFAAWREANPAHA---EAVRRLEGGLGAV 57
Query 61 -LPSHIAIPIIQKQKSH------PDIWLMVLSCLPLLG--------LLYVMNQQQQWTAD 105
LPS +P+ +Q + P + L+G L+ + AD
Sbjct 58 ALPS---VPMPHRQAARRLLDTPPSSPMQHARRALLVGGLGAGVAALVDLHMPLSDLAAD 114
Query 106 YRNGFHAPQTVKLPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTV 165
R + KL G ++ LN+ +A+DV D+ LR+G + + R V
Sbjct 115 MRTATAERRDFKLAGGHELRLNARSAVDVVPVVHGYDVRLRRGSVLAMAGAWERLR---V 171
Query 166 YTQQGQAQALGTKYLVKIDQKSSQI-AVLKGAVKVQPKTNNQYVIITKGQKISINQYNLH 224
+ G A+ +D + I AVL G+ + ++ G +
Sbjct 172 TSPVGTAECARGMLCASLDAQGRMIVAVLDGSAALSAP-EGAVTVVHSGGVHRFGPAGIE 230
Query 225 SVEYFDHSEIGWTKGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMA 284
+ S WT+G++ V PL++ + LRPY + +I + P +++ ++G FP+ +
Sbjct 231 PLRRSARSVAAWTQGMVEVEHRPLADVIDALRPYHAGMIEVQPSAASMHVTGRFPL-DPR 289
Query 285 QLYEMLENTYAIDVDRYAMNHIIRI 309
+ +ML +T +DV RY +RI
Sbjct 290 RALQMLVDTLPLDV-RYIAGLWVRI 313
>Q9L429 Putative inner membrane sensor [Bordetella bronchiseptica]
Length=344
Score = 67.4 bits (163), Expect = 5e-16
Identities = 57/316 (18%), Positives = 126/316 (40%), Gaps = 17/316 (5%)
Query 12 EEAVEWLMQMKQKPLNEIE----LLEFEQWKNRSQLHQSIWQQAYQLEEKFQSLPSHIAI 67
+EA+ W + +++ ++ + F W + H+ + + + L +H +
Sbjct 30 DEAMRWYLALRETGADDPDHAPLQARFRNWLEQDPRHRPAYDACARDWARLAPLQTHY-L 88
Query 68 PIIQKQKSHPDIW------LMVLSCLPLLGLLYVMNQQQQWTADYRNGFHAP----QTVK 117
+ H W +VL + GL + + ++ F P ++
Sbjct 89 ATRPGTRRHRGAWRAACALALVLVVTTIGGLAWQAHTYADFSLLGARQFDTPLEQTAALR 148
Query 118 LPDGGKIILNSNTAIDVKYTAKKRDIILRKGEIWIETQHDVKNRPFTVYTQQGQAQALGT 177
+ DG ++ ++ T + V Y +R+++L G + + D RPF + T G+ LGT
Sbjct 149 MRDGTRVDMDVGTTLTVAYDDARREVVLESGAAFFDVARD-SQRPFLIRTPAGEVHVLGT 207
Query 178 KYLVKIDQKSSQIAVLKGAVKVQPKTNNQYVIITKGQKISINQYNLHSVEYFDHSEI-GW 236
+ V+ + V +G V++ + V + GQ + + Q +V +++ W
Sbjct 208 AFEVQRLADGLLVNVARGHVRIAAPESPAGVELLTGQSVRLRQSRFDAVRPIGVNQVAAW 267
Query 237 TKGLIMVNEIPLSEFVQKLRPYQSALIYLDPEVSNIKISGTFPIANMAQLYEMLENTYAI 296
++ + L E Q + +++DP + + I+ + ++A + L A+
Sbjct 268 RHNRLVFDNRTLGEVAQAITRRGDWTVHVDPAAARLPITLAVQLNDVANSLQALPEILAV 327
Query 297 DVDRYAMNHIIRIRQK 312
DV R I R +
Sbjct 328 DVVRTGRTLTISARSR 343
Lambda K H a alpha
0.320 0.135 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1233540
Database: d0d39581f798aefd7cc7e09e316ec110.TrEMBL.fasta
Posted date: May 12, 2024 2:33 AM
Number of letters in database: 5,419
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
