BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1742f40a52d89f2e88031e3c723c5f57.SwissProt.fasta
25 sequences; 1,699 total letters
Query= ACIAD1787
Length=71
Score E
Sequences producing significant alignments: (Bits) Value
P95459 Major cold shock protein CspA [Pseudomonas aeruginosa (str... 94.4 2e-31
Q9KL16 Cold shock protein CspV [Vibrio cholerae serotype O1 (stra... 90.9 4e-30
Q9S170 Cold shock-like protein CspG [Shewanella violacea (strain ... 88.2 5e-29
Q9KN00 Cold shock-like protein CspA [Vibrio cholerae serotype O1 ... 88.2 5e-29
Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype ... 87.4 9e-29
P0A105 Cold shock protein CapB [Pseudomonas syringae pv. tomato (... 87.0 1e-28
P0A106 Cold shock protein CapB [Pseudomonas fragi] 87.0 1e-28
P0DA49 Major cold shock protein [Streptococcus pyogenes serotype ... 86.3 3e-28
P0A361 Major cold shock protein [Streptococcus pyogenes serotype ... 86.3 3e-28
P0DA48 Major cold shock protein [Streptococcus pyogenes serotype ... 86.3 3e-28
P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype M1] 86.3 3e-28
P72366 Cold shock-like protein CspA [Stigmatella aurantiaca (stra... 85.1 8e-28
P0A975 Cold shock-like protein CspE [Shigella flexneri] 84.7 1e-27
P0A973 Cold shock-like protein CspE [Escherichia coli O6:H1 (stra... 84.7 1e-27
P0A974 Cold shock-like protein CspE [Escherichia coli O157:H7] 84.7 1e-27
E0J1Q3 Cold shock-like protein CspE [Escherichia coli (strain ATC... 84.7 1e-27
P0A972 Cold shock-like protein CspE [Escherichia coli (strain K12)] 84.7 1e-27
Q9S1B7 Cold shock-like protein CspA [Shewanella violacea (strain ... 84.3 2e-27
P72192 Temperature acclimation protein B [Pseudomonas fragi] 82.4 8e-27
P39158 Cold shock protein CspC [Bacillus subtilis (strain 168)] 81.3 2e-26
P62170 Cold shock-like protein CspC [Bacillus cereus] 80.9 3e-26
Q45099 Cold shock-like protein CspD [Bacillus cereus] 80.5 5e-26
O54310 Cold shock-like protein [Thermotoga maritima (strain ATCC ... 80.1 7e-26
E0J500 Cold shock-like protein CspC [Escherichia coli (strain ATC... 80.1 7e-26
P0A9Y6 Cold shock-like protein CspC [Escherichia coli (strain K12)] 80.1 7e-26
>P95459 Major cold shock protein CspA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=69
Score = 94.4 bits (233), Expect = 2e-31
Identities = 41/69 (59%), Positives = 53/69 (77%), Gaps = 0/69 (0%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG 60
MSN GTVKWFN+ KGFGFI+ +SG D+F H+ I +GFK+L EGQ+V F+VVNG+KG
Sbjct 1 MSNRQNGTVKWFNDAKGFGFITPESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQKG 60
Query 61 LQASNISIV 69
LQA + +V
Sbjct 61 LQADEVQVV 69
>Q9KL16 Cold shock protein CspV [Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961)]
Length=70
Score = 90.9 bits (224), Expect = 4e-30
Identities = 42/67 (63%), Positives = 52/67 (78%), Gaps = 1/67 (1%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKK 59
MS + G+VKWFNETKGFGF++ D+G DVF H++ I + GFKTL EGQRV F+V GKK
Sbjct 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKK 60
Query 60 GLQASNI 66
G QASN+
Sbjct 61 GPQASNV 67
>Q9S170 Cold shock-like protein CspG [Shewanella violacea (strain
JCM 10179 / CIP 106290 / LMG 19151 / DSS12)]
Length=70
Score = 88.2 bits (217), Expect = 5e-29
Identities = 41/67 (61%), Positives = 52/67 (78%), Gaps = 1/67 (1%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKK 59
MSN+ G VKWFNE KGFGFI+ D+G +DVF H+ I++ GFKTL EGQ+V F V G+K
Sbjct 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQK 60
Query 60 GLQASNI 66
GLQA+N+
Sbjct 61 GLQAANV 67
>Q9KN00 Cold shock-like protein CspA [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=70
Score = 88.2 bits (217), Expect = 5e-29
Identities = 42/68 (62%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKK 59
MS + G+VKWFNETKGFGFIS D+G +DVF H+ I + GFKTL EGQRV F V GKK
Sbjct 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKK 60
Query 60 GLQASNIS 67
G QA+ ++
Sbjct 61 GPQAAQVT 68
>Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394)]
Length=67
Score = 87.4 bits (215), Expect = 9e-29
Identities = 41/62 (66%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFIS+++G+DVFAH+S I SGFKTL EGQ+V F V G++G QA N
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQRGPQAVN 62
Query 66 IS 67
I+
Sbjct 63 IT 64
>P0A105 Cold shock protein CapB [Pseudomonas syringae pv. tomato
(strain ATCC BAA-871 / DC3000)]
Length=69
Score = 87.0 bits (214), Expect = 1e-28
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 0/69 (0%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG 60
MSN GTVKWFN+ KGFGFI+ SG+D+F H+ I + GFK+L EGQ+V F+ G+KG
Sbjct 1 MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG 60
Query 61 LQASNISIV 69
+QA + ++
Sbjct 61 MQAEEVQVI 69
>P0A106 Cold shock protein CapB [Pseudomonas fragi]
Length=69
Score = 87.0 bits (214), Expect = 1e-28
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 0/69 (0%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG 60
MSN GTVKWFN+ KGFGFI+ SG+D+F H+ I + GFK+L EGQ+V F+ G+KG
Sbjct 1 MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG 60
Query 61 LQASNISIV 69
+QA + ++
Sbjct 61 MQAEEVQVI 69
>P0DA49 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain SSI-1)]
Length=67
Score = 86.3 bits (212), Expect = 3e-28
Identities = 40/62 (65%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFIS+++G+DVFAH+S I +GFKTL EGQ+V F V G++G QA N
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVN 62
Query 66 IS 67
I+
Sbjct 63 IT 64
>P0A361 Major cold shock protein [Streptococcus pyogenes serotype
M18 (strain MGAS8232)]
Length=67
Score = 86.3 bits (212), Expect = 3e-28
Identities = 40/62 (65%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFIS+++G+DVFAH+S I +GFKTL EGQ+V F V G++G QA N
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVN 62
Query 66 IS 67
I+
Sbjct 63 IT 64
>P0DA48 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315)]
Length=67
Score = 86.3 bits (212), Expect = 3e-28
Identities = 40/62 (65%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFIS+++G+DVFAH+S I +GFKTL EGQ+V F V G++G QA N
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVN 62
Query 66 IS 67
I+
Sbjct 63 IT 64
>P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype
M1]
Length=67
Score = 86.3 bits (212), Expect = 3e-28
Identities = 40/62 (65%), Positives = 50/62 (81%), Gaps = 0/62 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFIS+++G+DVFAH+S I +GFKTL EGQ+V F V G++G QA N
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVN 62
Query 66 IS 67
I+
Sbjct 63 IT 64
>P72366 Cold shock-like protein CspA [Stigmatella aurantiaca (strain
DW4/3-1)]
Length=68
Score = 85.1 bits (209), Expect = 8e-28
Identities = 40/61 (66%), Positives = 47/61 (77%), Gaps = 1/61 (2%)
Query 7 GTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
GTVKWFN+ KGFGFI+ D G EDVF H+S I+ GF+TL EGQ+VEF V G KGLQA N
Sbjct 4 GTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKGLQAQN 63
Query 66 I 66
+
Sbjct 64 V 64
>P0A975 Cold shock-like protein CspE [Shigella flexneri]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 1/63 (2%)
Query 5 IQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ + G +DVF H+S I +GFKTL EGQRVEF + NG KG A
Sbjct 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSA 63
Query 64 SNI 66
+N+
Sbjct 64 ANV 66
>P0A973 Cold shock-like protein CspE [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 1/63 (2%)
Query 5 IQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ + G +DVF H+S I +GFKTL EGQRVEF + NG KG A
Sbjct 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSA 63
Query 64 SNI 66
+N+
Sbjct 64 ANV 66
>P0A974 Cold shock-like protein CspE [Escherichia coli O157:H7]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 1/63 (2%)
Query 5 IQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ + G +DVF H+S I +GFKTL EGQRVEF + NG KG A
Sbjct 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSA 63
Query 64 SNI 66
+N+
Sbjct 64 ANV 66
>E0J1Q3 Cold shock-like protein CspE [Escherichia coli (strain
ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 /
NCIMB 8666 / NRRL B-766 / W)]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 1/63 (2%)
Query 5 IQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ + G +DVF H+S I +GFKTL EGQRVEF + NG KG A
Sbjct 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSA 63
Query 64 SNI 66
+N+
Sbjct 64 ANV 66
>P0A972 Cold shock-like protein CspE [Escherichia coli (strain
K12)]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 39/63 (62%), Positives = 49/63 (78%), Gaps = 1/63 (2%)
Query 5 IQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ + G +DVF H+S I +GFKTL EGQRVEF + NG KG A
Sbjct 4 IKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSA 63
Query 64 SNI 66
+N+
Sbjct 64 ANV 66
>Q9S1B7 Cold shock-like protein CspA [Shewanella violacea (strain
JCM 10179 / CIP 106290 / LMG 19151 / DSS12)]
Length=70
Score = 84.3 bits (207), Expect = 2e-27
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSG-EDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKK 59
MS++ GTVKWFNE KGFGF++ D+G DVF H+ I++ GFKTL EGQ+V F V G K
Sbjct 1 MSDSNTGTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPK 60
Query 60 GLQASNI 66
GLQASN+
Sbjct 61 GLQASNV 67
>P72192 Temperature acclimation protein B [Pseudomonas fragi]
Length=63
Score = 82.4 bits (202), Expect = 8e-27
Identities = 36/63 (57%), Positives = 47/63 (75%), Gaps = 0/63 (0%)
Query 1 MSNTIQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKG 60
MS GTVKWFN+ KGFGFI+ +SG D+F H+ I +GFK+L EGQ+V F+ V G+KG
Sbjct 1 MSQRQSGTVKWFNDEKGFGFITPESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG 60
Query 61 LQA 63
+QA
Sbjct 61 MQA 63
>P39158 Cold shock protein CspC [Bacillus subtilis (strain 168)]
Length=66
Score = 81.3 bits (199), Expect = 2e-26
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 0/61 (0%)
Query 6 QGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASN 65
QGTVKWFN KGFGFI ++G+DVF H+S I + GFK+L EGQ+V F V G +G QA+N
Sbjct 3 QGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQAAN 62
Query 66 I 66
+
Sbjct 63 V 63
>P62170 Cold shock-like protein CspC [Bacillus cereus]
Length=65
Score = 80.9 bits (198), Expect = 3e-26
Identities = 35/62 (56%), Positives = 47/62 (76%), Gaps = 0/62 (0%)
Query 5 IQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQAS 64
+QG VKWFN KGFGFI + G+DVF H+S I G+K+L EGQ+VEF +V+G +G QA+
Sbjct 1 MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA 60
Query 65 NI 66
N+
Sbjct 61 NV 62
>Q45099 Cold shock-like protein CspD [Bacillus cereus]
Length=66
Score = 80.5 bits (197), Expect = 5e-26
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 0/61 (0%)
Query 7 GTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQASNI 66
G VKWFN KGFGFI + GEDVF H+S I GFKTL EGQ V F +V+G +G QA+N+
Sbjct 4 GKVKWFNGEKGFGFIEVEGGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVDGNRGPQAANV 63
Query 67 S 67
+
Sbjct 64 T 64
>O54310 Cold shock-like protein [Thermotoga maritima (strain ATCC
43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=66
Score = 80.1 bits (196), Expect = 7e-26
Identities = 36/66 (55%), Positives = 48/66 (73%), Gaps = 0/66 (0%)
Query 5 IQGTVKWFNETKGFGFISSDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQAS 64
++G VKWF+ KG+GFI+ D G DVF H+S I GFKTL EGQ VEF + GKKG QA+
Sbjct 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQAA 60
Query 65 NISIVK 70
++ +V+
Sbjct 61 HVKVVE 66
>E0J500 Cold shock-like protein CspC [Escherichia coli (strain
ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 /
NCIMB 8666 / NRRL B-766 / W)]
Length=69
Score = 80.1 bits (196), Expect = 7e-26
Identities = 37/66 (56%), Positives = 50/66 (76%), Gaps = 1/66 (2%)
Query 5 IQGTVKWFNETKGFGFIS-SDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ +D +DVF H+S I +GFKTL EGQ VEF + +G+KG A
Sbjct 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAA 63
Query 64 SNISIV 69
N++ +
Sbjct 64 VNVTAI 69
>P0A9Y6 Cold shock-like protein CspC [Escherichia coli (strain
K12)]
Length=69
Score = 80.1 bits (196), Expect = 7e-26
Identities = 37/66 (56%), Positives = 50/66 (76%), Gaps = 1/66 (2%)
Query 5 IQGTVKWFNETKGFGFIS-SDSGEDVFAHYSEISNSGFKTLLEGQRVEFLVVNGKKGLQA 63
I+G VKWFNE+KGFGFI+ +D +DVF H+S I +GFKTL EGQ VEF + +G+KG A
Sbjct 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAA 63
Query 64 SNISIV 69
N++ +
Sbjct 64 VNVTAI 69
Lambda K H a alpha
0.323 0.138 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 51653
Database: 1742f40a52d89f2e88031e3c723c5f57.SwissProt.fasta
Posted date: May 10, 2024 1:36 AM
Number of letters in database: 1,699
Number of sequences in database: 25
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40