BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b09a00ea54e825baaf2378c89578b2a9.SwissProt.fasta
2 sequences; 370 total letters
Query= ACIAD1802
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri] 35.0 1e-07
P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli ... 35.0 1e-07
>P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri]
Length=185
Score = 35.0 bits (79), Expect = 1e-07
Identities = 21/54 (39%), Positives = 31/54 (57%), Gaps = 1/54 (2%)
Query 33 GQLLTHLRKNILGLSQEQYATLVGISRRTLTDIEQDKGKLTQSVLDKVFKPLGL 86
G+ L+ +R+ GLSQ + A L G++ ++ IEQDK S L K+ K GL
Sbjct 9 GKRLSEIRQQ-QGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGL 61
>P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli
(strain K12)]
Length=185
Score = 35.0 bits (79), Expect = 1e-07
Identities = 21/54 (39%), Positives = 31/54 (57%), Gaps = 1/54 (2%)
Query 33 GQLLTHLRKNILGLSQEQYATLVGISRRTLTDIEQDKGKLTQSVLDKVFKPLGL 86
G+ L+ +R+ GLSQ + A L G++ ++ IEQDK S L K+ K GL
Sbjct 9 GKRLSEIRQQ-QGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGL 61
Lambda K H a alpha
0.323 0.139 0.381 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 29700
Database: b09a00ea54e825baaf2378c89578b2a9.SwissProt.fasta
Posted date: May 11, 2024 4:03 PM
Number of letters in database: 370
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40