Comparative Genomics

ACIAD1802 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 586180c7e198138a01d0661f30655d11.TrEMBL.fasta
           15 sequences; 1,572 total letters



Query= ACIAD1802

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FBC6 Putative transcriptional regulator [Acinetobacter baylyi (...  213     2e-77
A0A7G2SHY5 XRE family transcriptional regulator [Acinetobacter sp]    213     2e-77
D0RY18 DNA-binding helix-turn-helix protein [Acinetobacter calcoa...  181     8e-65
A0A009T5T7 Helix-turn-helix family protein [Acinetobacter baumann...  179     5e-64
A0A0A8XFQ7 HTH cro/C1-type domain-containing protein [Acinetobact...  179     7e-64
B0VPP9 Transcriptional regulator [Acinetobacter baumannii (strain...  178     9e-64
D0SIR2 DNA-binding helix-turn-helix protein [Acinetobacter junii ...  178     9e-64
D4XQH4 DNA-binding helix-turn-helix protein [Acinetobacter haemol...  176     5e-63
C0VNX1 DNA-binding helix-turn-helix protein [Acinetobacter sp. (s...  176     5e-63
A0A7H2PW29 Helix-turn-helix transcriptional regulator [Acinetobac...  176     1e-62
A0A1V2V186 XRE family transcriptional regulator [Acinetobacter ge...  175     2e-62
A0A0Q5GDE5 XRE family transcriptional regulator [Acinetobacter sp...  174     3e-62
N8S5T2 Helix-turn-helix transcriptional regulator [Acinetobacter ...  174     3e-62
A0A446ZJJ4 Transcriptional regulator, y4mF family [Acinetobacter ...  174     3e-62
A0A3R9QHB8 XRE family transcriptional regulator [Acinetobacter la...  174     4e-62


>Q6FBC6 Putative transcriptional regulator [Acinetobacter baylyi 
(strain ATCC 33305 / BD413 / ADP1)]
Length=109

 Score = 213 bits (542),  Expect = 2e-77
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR
Sbjct  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA  109
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA  109


>A0A7G2SHY5 XRE family transcriptional regulator [Acinetobacter 
sp]
Length=109

 Score = 213 bits (542),  Expect = 2e-77
 Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR
Sbjct  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA  109
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVDDKA  109


>D0RY18 DNA-binding helix-turn-helix protein [Acinetobacter calcoaceticus 
RUH2202]
Length=106

 Score = 181 bits (459),  Expect = 8e-65
 Identities = 92/103 (89%), Positives = 97/103 (94%), Gaps = 0/103 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT+MN   Q QDRQQVLIDLY+QYLLSEITLGQLL+HLRKN+LGLSQEQYA LVGISRR
Sbjct  1    MGTAMNIKNQTQDRQQVLIDLYKQYLLSEITLGQLLSHLRKNVLGLSQEQYAALVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVGKIIK  103


>A0A009T5T7 Helix-turn-helix family protein [Acinetobacter baumannii 
99063]
Length=106

 Score = 179 bits (454),  Expect = 5e-64
 Identities = 90/103 (87%), Positives = 97/103 (94%), Gaps = 0/103 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT+MN   Q QDRQQ+LIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYA LVGISRR
Sbjct  1    MGTAMNVKNQTQDRQQILIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYANLVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIK  103


>A0A0A8XFQ7 HTH cro/C1-type domain-containing protein [Acinetobacter 
calcoaceticus]
Length=106

 Score = 179 bits (453),  Expect = 7e-64
 Identities = 91/106 (86%), Positives = 97/106 (92%), Gaps = 0/106 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT MN   Q QDRQQVLIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYA LVGISRR
Sbjct  1    MGTVMNVKNQTQDRQQVLIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYAALVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVD  106
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK  +
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIKPTE  106


>B0VPP9 Transcriptional regulator [Acinetobacter baumannii (strain 
SDF)]
Length=106

 Score = 178 bits (452),  Expect = 9e-64
 Identities = 90/103 (87%), Positives = 97/103 (94%), Gaps = 0/103 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT+MN   Q QDRQQ+LIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYA LVGISRR
Sbjct  1    MGTAMNVKNQAQDRQQILIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYANLVGISRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIK  103


>D0SIR2 DNA-binding helix-turn-helix protein [Acinetobacter junii 
SH205]
Length=106

 Score = 178 bits (452),  Expect = 9e-64
 Identities = 90/103 (87%), Positives = 95/103 (92%), Gaps = 0/103 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT MN   Q QDRQQVLIDLY QYLL+EITLGQLL +LRKNILG+SQEQYA LVG+SRR
Sbjct  1    MGTIMNTKNQTQDRQQVLIDLYMQYLLNEITLGQLLAYLRKNILGMSQEQYANLVGVSRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIVRKIIK
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVRKIIK  103


>D4XQH4 DNA-binding helix-turn-helix protein [Acinetobacter haemolyticus 
ATCC 19194]
Length=106

 Score = 176 bits (447),  Expect = 5e-63
 Identities = 89/104 (86%), Positives = 96/104 (92%), Gaps = 0/104 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT MN   Q QDRQQVLIDLY QYLL+EITLGQLL +LRKNILG+SQEQYA LVG+SRR
Sbjct  1    MGTIMNIKNQPQDRQQVLIDLYMQYLLNEITLGQLLAYLRKNILGMSQEQYANLVGVSRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKS  104
            TLTDIEQDKGKLTQSVLDKVFKPLGL+AGLVPTH+HIVRKI+KS
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLQAGLVPTHEHIVRKIVKS  104


>C0VNX1 DNA-binding helix-turn-helix protein [Acinetobacter sp. 
(strain ATCC 27244 / 9458)]
Length=106

 Score = 176 bits (447),  Expect = 5e-63
 Identities = 89/104 (86%), Positives = 96/104 (92%), Gaps = 0/104 (0%)

Query  1    MGTSMNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRR  60
            MGT MN   Q QDRQQVLIDLY QYLL+EITLGQLL +LRKNILG+SQEQYA LVG+SRR
Sbjct  1    MGTIMNIKNQPQDRQQVLIDLYMQYLLNEITLGQLLAYLRKNILGMSQEQYANLVGVSRR  60

Query  61   TLTDIEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKS  104
            TLTDIEQDKGKLTQSVLDKVFKPLGL+AGLVPTH+HIVRKI+KS
Sbjct  61   TLTDIEQDKGKLTQSVLDKVFKPLGLQAGLVPTHEHIVRKIVKS  104


>A0A7H2PW29 Helix-turn-helix transcriptional regulator [Acinetobacter 
seifertii]
Length=102

 Score = 176 bits (445),  Expect = 1e-62
 Identities = 90/102 (88%), Positives = 95/102 (93%), Gaps = 0/102 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQVLIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYATLVGISRRTLTD
Sbjct  1    MNIKNQTQDRQQVLIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYATLVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIKSVD  106
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK  D
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIKPSD  102


>A0A1V2V186 XRE family transcriptional regulator [Acinetobacter 
genomosp. 33YU]
Length=102

 Score = 175 bits (443),  Expect = 2e-62
 Identities = 89/99 (90%), Positives = 94/99 (95%), Gaps = 0/99 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQVLIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYATLVGISRRTLTD
Sbjct  1    MNVKNQTQDRQQVLIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYATLVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIK  99


>A0A0Q5GDE5 XRE family transcriptional regulator [Acinetobacter 
sp. Leaf130]
Length=102

 Score = 174 bits (442),  Expect = 3e-62
 Identities = 89/99 (90%), Positives = 93/99 (94%), Gaps = 0/99 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQVLIDLY+QYLLSEITLGQLL+HLRKN+LGLSQEQYA LVGISRRTLTD
Sbjct  1    MNIKNQTQDRQQVLIDLYKQYLLSEITLGQLLSHLRKNVLGLSQEQYAALVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVGKIIK  99


>N8S5T2 Helix-turn-helix transcriptional regulator [Acinetobacter 
seifertii]
Length=102

 Score = 174 bits (442),  Expect = 3e-62
 Identities = 89/99 (90%), Positives = 94/99 (95%), Gaps = 0/99 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQVLIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYATLVGISRRTLTD
Sbjct  1    MNIKNQTQDRQQVLIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYATLVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVSKIIK  99


>A0A446ZJJ4 Transcriptional regulator, y4mF family [Acinetobacter 
calcoaceticus]
Length=102

 Score = 174 bits (442),  Expect = 3e-62
 Identities = 89/99 (90%), Positives = 93/99 (94%), Gaps = 0/99 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQVLIDLY+QYLLSEITLGQLL+HLRKN+LGLSQEQYA LVGISRRTLTD
Sbjct  1    MNIKNQTQDRQQVLIDLYKQYLLSEITLGQLLSHLRKNVLGLSQEQYAALVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVGKIIK  99


>A0A3R9QHB8 XRE family transcriptional regulator [Acinetobacter 
lactucae]
Length=102

 Score = 174 bits (441),  Expect = 4e-62
 Identities = 88/99 (89%), Positives = 94/99 (95%), Gaps = 0/99 (0%)

Query  5    MNKGTQNQDRQQVLIDLYQQYLLSEITLGQLLTHLRKNILGLSQEQYATLVGISRRTLTD  64
            MN   Q QDRQQ+LIDLY+QYLLSEITLGQLL++LRKN+LGLSQEQYATLVGISRRTLTD
Sbjct  1    MNVKNQTQDRQQILIDLYKQYLLSEITLGQLLSYLRKNVLGLSQEQYATLVGISRRTLTD  60

Query  65   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHQHIVRKIIK  103
            IEQDKGKLTQSVLDKVFKPLGLKAGLVPTH+HIV KIIK
Sbjct  61   IEQDKGKLTQSVLDKVFKPLGLKAGLVPTHEHIVDKIIK  99



Lambda      K        H        a         alpha
   0.323    0.139    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94464


  Database: 586180c7e198138a01d0661f30655d11.TrEMBL.fasta
    Posted date:  May 11, 2024  1:53 PM
  Number of letters in database: 1,572
  Number of sequences in database:  15



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40