BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 80b1ae322534e65215a30ba0c8455f9b.TrEMBL.fasta
11 sequences; 3,036 total letters
Query= ACIAD1837
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
Q6FB93 Uncharacterized protein [Acinetobacter baylyi (strain ATCC... 108 2e-37
A0A653KAU7 Putative transcriptional regulator (AraC family) [Acin... 66.6 7e-19
N8W828 HTH araC/xylS-type domain-containing protein [Acinetobacte... 60.1 2e-16
N9SCQ6 HTH araC/xylS-type domain-containing protein [Acinetobacte... 60.1 2e-16
A0A6P1LRJ4 AraC family transcriptional regulator [Acinetobacter d... 57.4 2e-15
A0A0B0KTZ3 Transcriptional regulator, AraC family [Acinetobacter ... 56.2 4e-15
N8V404 HTH araC/xylS-type domain-containing protein [Acinetobacte... 54.3 2e-14
N9Q8F0 HTH araC/xylS-type domain-containing protein [Acinetobacte... 53.5 4e-14
N9K2W8 HTH araC/xylS-type domain-containing protein [Acinetobacte... 52.4 1e-13
A0A6P1IEX4 AraC family transcriptional regulator [Hydrogenophaga ... 47.4 6e-12
A0A0T2ZL80 AraC family transcriptional regulator [Hydrogenophaga ... 46.2 2e-11
>Q6FB93 Uncharacterized protein [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=53
Score = 108 bits (270), Expect = 2e-37
Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPSVRIIFITWV 53
MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPSVRIIFITWV
Sbjct 1 MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPSVRIIFITWV 53
>A0A653KAU7 Putative transcriptional regulator (AraC family) [Acinetobacter
proteolyticus]
Length=297
Score = 66.6 bits (161), Expect = 7e-19
Identities = 32/41 (78%), Positives = 34/41 (83%), Gaps = 0/41 (0%)
Query 4 DENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPS 44
DEN D+ITSLA TVDRL Q DGDH+TAI LSLHRRSEPS
Sbjct 3 DENINDVITSLAKTVDRLSQTDGDHQTAIATLSLHRRSEPS 43
Score = 13.5 bits (23), Expect = 9.6
Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 11 ITSLAHTVDRLIQVD 25
++ L H + IQ+D
Sbjct 198 VSWLKHNFIQQIQMD 212
>N8W828 HTH araC/xylS-type domain-containing protein [Acinetobacter
sp. CIP 56.2]
Length=297
Score = 60.1 bits (144), Expect = 2e-16
Identities = 28/40 (70%), Positives = 33/40 (83%), Gaps = 0/40 (0%)
Query 5 ENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPS 44
ENT D+I L++TV+RLIQ DGDH+TAIP LSLHRRS S
Sbjct 4 ENTHDVIALLSNTVNRLIQTDGDHQTAIPALSLHRRSAAS 43
>N9SCQ6 HTH araC/xylS-type domain-containing protein [Acinetobacter
dispersus]
Length=297
Score = 60.1 bits (144), Expect = 2e-16
Identities = 28/40 (70%), Positives = 33/40 (83%), Gaps = 0/40 (0%)
Query 5 ENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPS 44
ENT D+I L++TV+RLIQ DGDH+TAIP LSLHRRS S
Sbjct 4 ENTHDVIALLSNTVNRLIQTDGDHQTAIPALSLHRRSAAS 43
>A0A6P1LRJ4 AraC family transcriptional regulator [Acinetobacter
dispersus]
Length=298
Score = 57.4 bits (137), Expect = 2e-15
Identities = 29/44 (66%), Positives = 32/44 (73%), Gaps = 0/44 (0%)
Query 1 MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEPS 44
MI E+TQ + SL TVD LIQ DGDH+TAIP LSLHRRS S
Sbjct 1 MIEYEDTQKMTASLVQTVDHLIQTDGDHDTAIPSLSLHRRSAAS 44
>A0A0B0KTZ3 Transcriptional regulator, AraC family [Acinetobacter
sp. neg1]
Length=298
Score = 56.2 bits (134), Expect = 4e-15
Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 0/43 (0%)
Query 1 MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEP 43
M+ E+ +++T+L TV++LI DGDH+TAIP LSLHRRSEP
Sbjct 1 MMFHEDENEVMTALVQTVNQLITTDGDHQTAIPALSLHRRSEP 43
>N8V404 HTH araC/xylS-type domain-containing protein [Acinetobacter
vivianii]
Length=298
Score = 54.3 bits (129), Expect = 2e-14
Identities = 24/43 (56%), Positives = 33/43 (77%), Gaps = 0/43 (0%)
Query 1 MIGDENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEP 43
M+ E+ +++T+L V++LI DGDH+TAIP LSLHRRSEP
Sbjct 1 MMFHEDQNEVMTALVQAVNQLITTDGDHQTAIPALSLHRRSEP 43
>N9Q8F0 HTH araC/xylS-type domain-containing protein [Acinetobacter
vivianii]
Length=297
Score = 53.5 bits (127), Expect = 4e-14
Identities = 23/39 (59%), Positives = 31/39 (79%), Gaps = 0/39 (0%)
Query 5 ENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRSEP 43
E+ +++T+L V++LI DGDH+TAIP LSLHRRSEP
Sbjct 4 EDKNEVMTALVQAVNQLITTDGDHQTAIPALSLHRRSEP 42
>N9K2W8 HTH araC/xylS-type domain-containing protein [Acinetobacter
sp. ANC 3929]
Length=297
Score = 52.4 bits (124), Expect = 1e-13
Identities = 25/37 (68%), Positives = 31/37 (84%), Gaps = 0/37 (0%)
Query 5 ENTQDIITSLAHTVDRLIQVDGDHETAIPLLSLHRRS 41
E+T+D+I L+ TV+RLIQ DGDH+TAI LSLHRRS
Sbjct 4 EHTRDVIALLSSTVNRLIQSDGDHQTAISPLSLHRRS 40
>A0A6P1IEX4 AraC family transcriptional regulator [Hydrogenophaga
sp. PBL-H3]
Length=302
Score = 47.4 bits (111), Expect = 6e-12
Identities = 20/31 (65%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
Query 11 ITSLAHTVDRLIQVDGDHETAIPLLSLHRRS 41
I +LAHT+ ++ ++DGDH TAIP LSLHRRS
Sbjct 3 IETLAHTIGKIARIDGDHPTAIPQLSLHRRS 33
>A0A0T2ZL80 AraC family transcriptional regulator [Hydrogenophaga
sp. Root209]
Length=302
Score = 46.2 bits (108), Expect = 2e-11
Identities = 20/31 (65%), Positives = 25/31 (81%), Gaps = 0/31 (0%)
Query 11 ITSLAHTVDRLIQVDGDHETAIPLLSLHRRS 41
I +LAH + R+ ++DGDH TAIP LSLHRRS
Sbjct 3 IETLAHDIGRIARIDGDHTTAIPQLSLHRRS 33
Lambda K H a alpha
0.333 0.145 0.444 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 77000
Database: 80b1ae322534e65215a30ba0c8455f9b.TrEMBL.fasta
Posted date: May 12, 2024 1:04 AM
Number of letters in database: 3,036
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
