BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d584bfa0906b5f358b40c5479202a3d5.SwissProt.fasta
1 sequences; 314 total letters
Query= ACIAD1847
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
P03064 Replication initiation protein [Staphylococcus aureus] 37.0 4e-07
>P03064 Replication initiation protein [Staphylococcus aureus]
Length=314
Score = 37.0 bits (84), Expect = 4e-07
Identities = 39/132 (30%), Positives = 62/132 (47%), Gaps = 25/132 (19%)
Query 245 NGKGRTLCIGSRDSGKYLRLYEKGRAEGDPNDNWQRAEVEFKSIDRV---LPFDMLLAPS 301
NGK T G RDS +++R+Y K + D D AEV + + RV L DM+ +
Sbjct 171 NGKPETKYFGVRDSNRFIRIYNKKQERKDNAD----AEVMSEHLWRVEIELKRDMVDYWN 226
Query 302 EFFIAAYPCFRDLAQHLQPERIETISKTAQINFQTAIENLKHQYG--------KYINIFK 353
+ CF DL H+ +TI +TA + + + ++G KY N+ K
Sbjct 227 D-------CFSDL--HILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIK 277
Query 354 EVFEPEELINLI 365
E+ P +L +L+
Sbjct 278 EI-SPVDLTDLM 288
Score = 16.9 bits (32), Expect = 0.79
Identities = 6/19 (32%), Positives = 10/19 (53%), Gaps = 0/19 (0%)
Query 315 AQHLQPERIETISKTAQIN 333
+ HL+ ++ SKT N
Sbjct 10 SNHLENHDLDNFSKTGYSN 28
Score = 15.0 bits (27), Expect = 3.2
Identities = 4/7 (57%), Positives = 7/7 (100%), Gaps = 0/7 (0%)
Query 174 NFAKSGW 180
NF+K+G+
Sbjct 20 NFSKTGY 26
Lambda K H a alpha
0.322 0.140 0.434 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 102315
Database: d584bfa0906b5f358b40c5479202a3d5.SwissProt.fasta
Posted date: May 10, 2024 2:39 AM
Number of letters in database: 314
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40