BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: edf8af53da9806c74c0f113fecc3294e.SwissProt.fasta
10 sequences; 3,107 total letters
Query= ACIAD1887
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
P32008 Nodulation protein D 2 [Rhizobium tropici] 92.8 3e-25
P10183 HTH-type transcriptional activator NahR [Pseudomonas putida] 91.7 6e-25
Q02876 Nodulation protein D 1 [Rhizobium tropici] 90.9 1e-24
Q9EXL7 HTH-type transcriptional activator NagR [Ralstonia sp] 90.5 2e-24
P12233 Nodulation protein D 2 [Bradyrhizobium japonicum] 86.7 5e-23
P23719 Nodulation protein D 2 [Rhizobium leguminosarum bv. phaseoli] 85.5 1e-22
P55700 Nodulation protein D 2 [Sinorhizobium fredii (strain NBRC ... 85.1 2e-22
Q52838 Nodulation protein D 1 [Mesorhizobium japonicum (strain LM... 84.3 3e-22
P23718 Nodulation protein D 1 [Rhizobium leguminosarum bv. phaseoli] 83.6 6e-22
P10151 HTH-type transcriptional regulator LeuO [Escherichia coli ... 83.2 8e-22
>P32008 Nodulation protein D 2 [Rhizobium tropici]
Length=314
Score = 92.8 bits (229), Expect = 3e-25
Identities = 73/275 (27%), Positives = 134/275 (49%), Gaps = 19/275 (7%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL + A+ +++++ A S+++SQ A S A+ RLR D++F G + +P
Sbjct 3 FKGLDLNLLVVLDALMTERNLTAAARSINLSQPAMSAAVARLRTNFRDDLFAMAGREFIP 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLI-QSLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A+ + PA++ ALL IQ + F+P+ + +I + D + + F K++ +
Sbjct 63 TPRAEGLAPAVRDALLQIQLSIVSWEPFNPAQSDRRFRIVLSDYVTLVFFEKVVARAAQE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVI----DIKHDLNKAIGFDFLVCDHYVVCTQQT 193
AP I F + L E L +DF+I + + A+ D VC V C
Sbjct 123 APGISFDCLPL-ADDFEELLRRGDIDFLIMPELFMSMHPHAALFEDKFVC---VGCRTNE 178
Query 194 DLSQ----ESYLAASHIGV---SSRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILE 246
LS+ E Y++ H+ V ++RR + E+ YL ++ + R + + Q +S +L
Sbjct 179 QLSEPFTFERYMSMGHVAVKFGNTRRPTI--EEWYLLEHGLKRRIEVVVQGFSMIPPML- 235
Query 247 QNPTAMLTIPNSILSHLSYSNALNVYQLPFDFPEI 281
+ T+P + H + + L + +LP P +
Sbjct 236 SGTERIGTMPLRLAQHFAKTIPLRIVELPLPIPPL 270
>P10183 HTH-type transcriptional activator NahR [Pseudomonas putida]
Length=300
Score = 91.7 bits (226), Expect = 6e-25
Identities = 73/294 (25%), Positives = 138/294 (47%), Gaps = 8/294 (3%)
Query 22 IDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLPTPF 81
+D+NL +F + + +S TA +L ++Q A S+AL+RLR L D +FVR M PTP+
Sbjct 6 LDLNLLVVFNQLLVDRRVSITAENLGLTQPAVSNALKRLRTSLQDPLFVRTHQGMEPTPY 65
Query 82 AQRIYPAIKSALLSIQNINLQKYTFDP-SLIQSLKIAIHDEIEPIIFPKIIRHFQEIAPD 140
A + + SA+ +++N +FDP + ++ +A+ D E P+++ AP+
Sbjct 66 AAHLAEPVTSAMHALRNALQHHESFDPLTSERTFTLAMTDIGEIYFMPRLMDVLAHQAPN 125
Query 141 IQFASIKLDRKKIEHDLATQQLDFVIDIKHDLNKAIGFDFLVCDHYV-VCTQ-----QTD 194
++++ + L +D + + +L L+ +HYV +C + +
Sbjct 126 CVISTVRDSSMSLMQALQNGTVDLAVGLLPNLQTGFFQRRLLQNHYVCLCRKDHPVTREP 185
Query 195 LSQESYLAASHIGVSSRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQNPTAMLT 254
L+ E + + H+ V + G D Y+ + I R + L +++ IL Q + T
Sbjct 186 LTLERFCSYGHVRVIAAGTGHGEVDTYMTRVGIRRDIRLEVPHFAAVGHIL-QRTDLLAT 244
Query 255 IPNSILSHLSYSNALNVYQLPFDFPEINIGIFSFAHLSRNLRYDFLKKEIIALF 308
+P + L+ P PEI I +F A ++L +L++ + LF
Sbjct 245 VPIRLADCCVEPFGLSALPHPVVLPEIAINMFWHAKYHKDLANIWLRQLMFDLF 298
>Q02876 Nodulation protein D 1 [Rhizobium tropici]
Length=308
Score = 90.9 bits (224), Expect = 1e-24
Identities = 73/275 (27%), Positives = 132/275 (48%), Gaps = 22/275 (8%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL A+ +++++ A S+++SQ A S A+ RLR+ +DE+F +G +++
Sbjct 3 FKGLDLNLLVALDALMTERNLTAAARSINLSQPAMSAAVGRLRVYFEDELFTMNGRELVL 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDP-SLIQSLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A+ + A++ ALL IQ + FDP + +I + D + + K+++
Sbjct 63 TPRAKGLVSAVREALLHIQLSIISWEPFDPFQSDRRFRIILSDFLTLVFMEKVVKRRARE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVI------DIKHDLNKAIGFDFLVCDHYVVCTQ 191
AP + F + L + L ++DF+I H K + LVC V C +
Sbjct 123 APGVSFEFLPL-ADDYDELLRRGEVDFIILPDVFMPTGHPRAKLFE-ERLVC---VGCGR 177
Query 192 QTDLSQ----ESYLAASHIGV---SSRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQI 244
+LSQ + Y++ H+ +SRR + E+ YL ++ R + + Q +S L +
Sbjct 178 NQELSQPLTFDRYMSMGHVAAKFGNSRRPSI--EEWYLLEHGFKRRIEVVVQGFSMILPV 235
Query 245 LEQNPTAMLTIPNSILSHLSYSNALNVYQLPFDFP 279
L N + T+P + H + L + LP P
Sbjct 236 L-SNTNRIATVPLRLAQHFAEVLPLRIMDLPLPLP 269
>Q9EXL7 HTH-type transcriptional activator NagR [Ralstonia sp]
Length=301
Score = 90.5 bits (223), Expect = 2e-24
Identities = 71/296 (24%), Positives = 135/296 (46%), Gaps = 10/296 (3%)
Query 22 IDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLPTPF 81
ID+NL +F + +S+S L ++Q A S++L+RLR L D++F+R M PTP+
Sbjct 6 IDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRAALKDDLFLRTSKGMEPTPY 65
Query 82 AQRIYPAIKSALLSIQNINLQKYTFDP-SLIQSLKIAIHDEIEPIIFPKIIRHFQEIAPD 140
A + + AL ++Q + +FDP + ++ +A+ D E P ++ + AP
Sbjct 66 ALHLAEPVIYALNTLQTALTTRDSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPH 125
Query 141 IQFASIKLDRKKIEHDLATQQLDFVIDIKHDLNKAIGFDFLVCDHYVVCTQQTD------ 194
IQ ++++ + ++ D+ + +D + + +L F + H VC + D
Sbjct 126 IQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF-FQRRLFRHRYVCMFRKDHPSAKS 184
Query 195 -LSQESYLAASHIGVSSRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQNPTAML 253
+S + + H+GV + G D L + I R + L ++ IL + +
Sbjct 185 PMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPIL-HSTDLIA 243
Query 254 TIPNSILSHLSYSNALNVYQLPFDFPEINIGIFSFAHLSRNLRYDFLKKEIIALFA 309
T+P L P P+I I +F A +R+ +L++ + LF+
Sbjct 244 TVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFS 299
>P12233 Nodulation protein D 2 [Bradyrhizobium japonicum]
Length=312
Score = 86.7 bits (213), Expect = 5e-23
Identities = 75/270 (28%), Positives = 124/270 (46%), Gaps = 12/270 (4%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL A+ ++S++ A S+++SQ A S A+ RLR D++F G +++P
Sbjct 3 FKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIP 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLIQ-SLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A + PA++ ALL IQ + F+P Q +I + D I + F ++++
Sbjct 63 TPRAIALAPAVRDALLHIQFSIISWDMFNPVQSQRRFRIRLSDVIMLVFFERVVKRLARE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVI------DIKHDLNKAIGFDFLVCDHYVVCTQ 191
AP I F + L E L +DFVI H K + D LVC Q
Sbjct 123 APGIGFELLPLTEDPDEL-LRYGDVDFVILPELFASSDHPKAKLLD-DTLVCVGCPTNKQ 180
Query 192 -QTDLSQESYLAASHIGVS-SRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQNP 249
+ LS E+Y + HI R E+ L ++ + R + + +S +L
Sbjct 181 LKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLL-SGT 239
Query 250 TAMLTIPNSILSHLSYSNALNVYQLPFDFP 279
+ T+P ++ H + + L V +LP P
Sbjct 240 DRIATMPLRLVEHFAKTTPLRVAELPLALP 269
Score = 16.5 bits (31), Expect = 8.1
Identities = 7/17 (41%), Positives = 10/17 (59%), Gaps = 0/17 (0%)
Query 243 QILEQNPTAMLTIPNSI 259
Q+L Q M T P+S+
Sbjct 292 QVLLQEALHMTTPPDSV 308
>P23719 Nodulation protein D 2 [Rhizobium leguminosarum bv. phaseoli]
Length=318
Score = 85.5 bits (210), Expect = 1e-22
Identities = 72/269 (27%), Positives = 125/269 (46%), Gaps = 10/269 (4%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL A+ +++++ A S+++SQ A S A+ RLR DE+F +G ++
Sbjct 3 FKGLDLNLLVALDALTTERNLTAAARSINLSQPAMSAAIGRLRDYFRDELFTMNGRELRL 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLI-QSLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A+ + A++ LL +Q + F+PS + +I + D + I F KII
Sbjct 63 TPRAEGLASAVRETLLQVQCSIISWEPFNPSKSDRCFRIVLSDFMMLIYFNKIIERVARE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVIDIKHDLNKAIGFDFLVCDHY--VVCTQQTDL 195
AP + F + LD E L+ +DF+I + L+ A L + + V C+ DL
Sbjct 123 APAVSFELLPLDSDPYEM-LSRGDVDFLIVPEFFLSGAHPSAKLFTEKFVCVACSTNVDL 181
Query 196 SQ----ESYLAASHIGVS-SRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQNPT 250
E Y++ H+ + R E +L +N I R V + Q +S +L +
Sbjct 182 PSALTIEQYVSTGHVAAAFGRFLKPSVEGWFLLENGIQRRVEVVVQGFSLIPPVL-RGTN 240
Query 251 AMLTIPNSILSHLSYSNALNVYQLPFDFP 279
+ +P ++ H + L + LP P
Sbjct 241 RIANLPLRLVEHYESTFPLRIINLPLPLP 269
>P55700 Nodulation protein D 2 [Sinorhizobium fredii (strain NBRC
101917 / NGR234)]
Length=312
Score = 85.1 bits (209), Expect = 2e-22
Identities = 75/272 (28%), Positives = 126/272 (46%), Gaps = 16/272 (6%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL A+ ++S++ A S+++SQ A S A+ RLR D++F G +++P
Sbjct 3 FKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIP 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLIQS---LKIAIHDEIEPIIFPKIIRHFQ 135
TP A + PA++ ALL IQ + F+P +QS +I + D + + F ++++
Sbjct 63 TPRAIALAPAVRDALLHIQFSIISWDMFNP--VQSERRFRIRLSDVMMLVFFERVVKRLA 120
Query 136 EIAPDIQFASIKLDRKKIEHDLATQQLDFVI------DIKHDLNKAIGFDFLVCDHYVVC 189
AP I F + L E L +DFVI H K + D LVC
Sbjct 121 REAPGIGFELLPLTEDPDEL-LRYGDVDFVILPELFASSDHPKAKLLD-DTLVCVGCPTN 178
Query 190 TQ-QTDLSQESYLAASHIGVS-SRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQ 247
Q + LS E+Y + HI R E+ L ++ + R + + +S +L
Sbjct 179 KQLKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLL-S 237
Query 248 NPTAMLTIPNSILSHLSYSNALNVYQLPFDFP 279
+ T+P ++ H + + L V +LP P
Sbjct 238 GTDRIATMPLRLVEHFAKTTPLRVAELPLALP 269
>Q52838 Nodulation protein D 1 [Mesorhizobium japonicum (strain
LMG 29417 / CECT 9101 / MAFF 303099)]
Length=314
Score = 84.3 bits (207), Expect = 3e-22
Identities = 69/272 (25%), Positives = 130/272 (48%), Gaps = 16/272 (6%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL + A+ +++++ A S+++SQ A S A+ RLR +DE+F G + +
Sbjct 3 FKGLDLNLLVVLDALLTERTLTAAASSINLSQPAMSAAVARLRDYFNDELFTTSGRERVL 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLI-QSLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A+ + PA++SALL IQ + F+P+ + +I + D + F K++
Sbjct 63 TPRAETLAPAVRSALLQIQCSIISWDPFNPAQSDRRFRIILSDFATLVFFEKVVERVARE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVIDIKHDLNK-----AIGFDFLVCDHYVVCTQQ 192
AP + F + +D E L +DF+I + ++ A+ + LVC V C+
Sbjct 123 APAVSFELLPIDDDPDEL-LRRGDVDFLIFPELFMSSAHPRAALFDETLVC---VGCSTN 178
Query 193 TDLSQ----ESYLAASHIGVS-SRRAGVLFEDIYLNKNNISRHVFLRCQNYSTALQILEQ 247
L + E Y++ H+ V R E+ + ++ + R V + Q +S + +
Sbjct 179 KQLPRQLTFERYMSMRHVAVKFGRTLKPSIEEQFFLEHGLKRRVEIVVQAFS-MIPPMVS 237
Query 248 NPTAMLTIPNSILSHLSYSNALNVYQLPFDFP 279
+ T+P ++ H + L + +LP P
Sbjct 238 GTARIATMPFRLVQHFKKTFPLRIIELPLPLP 269
>P23718 Nodulation protein D 1 [Rhizobium leguminosarum bv. phaseoli]
Length=314
Score = 83.6 bits (205), Expect = 6e-22
Identities = 70/272 (26%), Positives = 130/272 (48%), Gaps = 16/272 (6%)
Query 19 FHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRLRLQLDDEIFVRHGNKMLP 78
F +D+NL A+ +++++ A S+++SQ A S A+ RLR +D++F G +++P
Sbjct 3 FKGLDLNLLVALDALMTERNLTAAARSINLSQPAMSAAVGRLRTYFNDDLFTMVGRELVP 62
Query 79 TPFAQRIYPAIKSALLSIQNINLQKYTFDPSLI-QSLKIAIHDEIEPIIFPKIIRHFQEI 137
TP A+R+ P+++ ALL IQ + F P+ + ++ + D + F K++
Sbjct 63 TPRAERLAPSVREALLHIQVSIISWDPFCPAQSDRCFRVILSDYAALVFFEKVVTRVARE 122
Query 138 APDIQFASIKLDRKKIEHDLATQQLDFVIDIKHDLNK-----AIGFDFLVCDHYVVCTQQ 192
AP + F + + E+ L DF+I + +++ A+ + LVC V C
Sbjct 123 APAVSFELLPIADNYDEY-LRRGDADFLIFPELLMSRAHPKVALFEETLVC---VGCHSN 178
Query 193 TDLSQ----ESYLAASHIGVSSRRAGVL-FEDIYLNKNNISRHVFLRCQNYSTALQILEQ 247
LS+ E Y++ H+ V A FE+ L + + RHV + Q +S + +
Sbjct 179 KLLSEQLTLERYMSMGHVVVKFGNARTASFEEWCLLGHGLKRHVEVVVQGFS-MVPFMLS 237
Query 248 NPTAMLTIPNSILSHLSYSNALNVYQLPFDFP 279
+ T+P ++ L + L + LP P
Sbjct 238 GTERIATMPLRLVKQLEKTIPLRIADLPLPLP 269
>P10151 HTH-type transcriptional regulator LeuO [Escherichia coli
(strain K12)]
Length=314
Score = 83.2 bits (204), Expect = 8e-22
Identities = 47/167 (28%), Positives = 92/167 (55%), Gaps = 2/167 (1%)
Query 1 MNNIHNSNNQDNHLDLGLFHRIDINLYPLFVAIFEQKSISKTAISLSISQSAASHALQRL 60
M + + + L +D+NL +F A+ ++++I++ A L +SQ A S+A+ RL
Sbjct 1 MPEVQTDHPETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARL 60
Query 61 RLQLDDEIFVRHGNKMLPTPFAQRIYPAIKSALLSIQNINLQKYTFDPSLIQSL-KIAIH 119
++ +DE+FVR+G + PT A +++ +++ AL +QN L F+P+ + + + +
Sbjct 61 KVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQN-ELPGSGFEPASSERVFHLCVC 119
Query 120 DEIEPIIFPKIIRHFQEIAPDIQFASIKLDRKKIEHDLATQQLDFVI 166
++ I+ +I H ++IAP+I + EH L Q+ +FVI
Sbjct 120 SPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVI 166
Score = 16.9 bits (32), Expect = 6.1
Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 0/12 (0%)
Query 19 FHRIDINLYPLF 30
FHR + PLF
Sbjct 171 FHRPEFTSVPLF 182
Lambda K H a alpha
0.327 0.140 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 714759
Database: edf8af53da9806c74c0f113fecc3294e.SwissProt.fasta
Posted date: Jun 2, 2024 2:22 PM
Number of letters in database: 3,107
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
