BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fd6399818687b36503a6e457d3ee1649.SwissProt.fasta
18 sequences; 8,119 total letters
Query= ACIAD1897
Length=467
Score E
Sequences producing significant alignments: (Bits) Value
P96681 Uncharacterized HTH-type transcriptional regulator YdfD [B... 183 2e-55
Q796Q6 Uncharacterized HTH-type transcriptional regulator YisV [B... 152 3e-44
P77730 Uncharacterized HTH-type transcriptional regulator YdcR [E... 147 2e-42
Q2FKF1 HTH-type transcriptional regulator NorG [Staphylococcus au... 146 4e-42
Q5HJR1 HTH-type transcriptional regulator NorG [Staphylococcus au... 146 4e-42
Q2G1P1 HTH-type transcriptional regulator NorG [Staphylococcus au... 146 4e-42
Q7A875 HTH-type transcriptional regulator NorG [Staphylococcus au... 144 3e-41
Q99XA5 HTH-type transcriptional regulator NorG [Staphylococcus au... 144 3e-41
Q2YUS3 HTH-type transcriptional regulator NorG [Staphylococcus au... 143 3e-41
P39389 Uncharacterized HTH-type transcriptional regulator YjiR [E... 139 1e-39
H3ZPL1 Aromatic-amino-acid aminotransferase 1 [Thermococcus litor... 126 3e-35
Q72LL6 2-aminoadipate transaminase [Thermus thermophilus (strain ... 120 2e-33
P95957 Uncharacterized aminotransferase SSO0104 [Saccharolobus so... 114 5e-31
P96669 Uncharacterized HTH-type transcriptional regulator YdeL [B... 113 3e-30
O07578 Uncharacterized HTH-type transcriptional regulator YhdI [B... 112 7e-30
Q08792 Uncharacterized HTH-type transcriptional regulator YcxD [B... 108 9e-29
P94426 HTH-type transcriptional regulatory protein GabR [Bacillus... 101 3e-26
P49309 Probable rhizopine catabolism regulatory protein MocR [Rhi... 97.1 9e-25
>P96681 Uncharacterized HTH-type transcriptional regulator YdfD
[Bacillus subtilis (strain 168)]
Length=482
Score = 183 bits (464), Expect = 2e-55
Identities = 125/451 (28%), Positives = 223/451 (49%), Gaps = 16/451 (4%)
Query 1 MTKIEQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRA 60
+ K Q++H++ +++ + G ++PS R+LAK + STV+ A E +++ GLIE
Sbjct 12 LPKYRQIVHFIKEKIGNGEWPIGSKIPSQRTLAKDFQVNRSTVITALEELMADGLIEGTM 71
Query 61 GSGFFVCAPLEPLILSHIEPIQDQ------NLDPLKISRQL--LEASSFLIKAGCGWLPD 112
G G V L+ + P DQ + KI +++ E+++ LI+ G L
Sbjct 72 GKGTVVINNTWTLMAKNSAPDWDQYVTSGIQMPSRKIVQEINQSESNTDLIQLSKGELSA 131
Query 113 DWMPHEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQILLTDS 172
+ P +++ + S+ E Y P G LRE L+ L T INV+ IL+
Sbjct 132 EIFPLAVMKEMMGKVSQH--MEAFGYEEPKGYLPLREALSNYLKTIGINVSSSSILIVSG 189
Query 173 GSYSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAII 232
++ LI LL+ G TV LD P Y + + +K+ + +G E
Sbjct 190 ALQALQLISMGLLQRGSTVYLDQPSYLYSLHVFQSAGMKLTGLPMDNEGLLPENVHLTRG 249
Query 233 EHHPRLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETSASPR--LS 290
E + TN HNPTG +S+ + +++++ E+ + ++EDDI+ + P +
Sbjct 250 ERGRAILYTNPCFHNPTGILMSKKRREEILAVSENTQLPIIEDDIYRELWIDEIPPYPIK 309
Query 291 ALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKIL 350
+D + +YIGS SKTLS LR G+IV I+ L D+K+ T + ++ S V +
Sbjct 310 TIDKNGHVLYIGSLSKTLSPGLRIGWIVGPEPVIERLSDIKMQTDYGSSSLSQRVAAEWF 369
Query 351 THGGYRKHIEQLKIRLADAMIISIHRLEK--IRIQPWIRPKAGIFLWCELPTDINIQKLM 408
T G Y++H+E+++ +L +++ LE + W PK G F+W ++ I+++ L
Sbjct 370 TSGHYQQHVEKVRQQLKVRRELALSALETHLKEVATWNIPKGGFFVWIKILPSISMKLLY 429
Query 409 SYCTEKGVILALGNSFGEAHTFQNFLRFNIA 439
+ KG+++ LG+ + A N++R + A
Sbjct 430 TKALSKGILINLGSIY--AQEKGNYIRLSYA 458
>Q796Q6 Uncharacterized HTH-type transcriptional regulator YisV
[Bacillus subtilis (strain 168)]
Length=484
Score = 152 bits (385), Expect = 3e-44
Identities = 113/434 (26%), Positives = 196/434 (45%), Gaps = 26/434 (6%)
Query 6 QVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSG-- 63
Q+ Y+ ++ G ++PS R+LA + STV A + + S GL+E R G G
Sbjct 19 QIEQYMKDKILHGEWAVGTKIPSQRTLADMFQVNRSTVTAAIDELTSQGLLEGRKGGGTK 78
Query 64 -----FFVCAPLEPLILSHI--EPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMP 116
+ V PL S I N ++ Q E + +I+ G G L D +P
Sbjct 79 VVNSTWSVLTAEPPLDWSDYVRSGIHRANSSIIQAINQN-EPRADIIRLGTGELSPDLVP 137
Query 117 HEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYS 176
+ + + + + + + Y P G LRE +A L K I+V+P IL+ +
Sbjct 138 ADTIGRMFQQINPGVLS--LGYEQPKGNRQLREAVADHLKGKKIHVSPSAILIVSGALQA 195
Query 177 IDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHP 236
+ LI LLK +L + P Y L +H + +R D E K ++ +
Sbjct 196 LQLISIGLLKRDSVILTEKPSY-----LQSLHVFQSAGMRLRGLPMDDEGVKAGLVSSNR 250
Query 237 RLY-----ITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSD--FETSASPRL 289
+ Y T HNPTG +S+ + +++SL + M ++EDD + D FE L
Sbjct 251 KQYGGQLLYTIPSFHNPTGTVMSEQRRKEIISLSKKEQMPIIEDDAYGDLWFEEKPPQPL 310
Query 290 SALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKI 349
A+D N +Y+G+FSKT+S LR G++ I+ L D+K+ T + + S +
Sbjct 311 KAMDHEGNILYLGAFSKTVSPGLRIGWLAGPEPVIERLADIKMQTDYGSSGLSQWAAAEW 370
Query 350 LTHGGYRKHIEQLKIRLADAMIISIHRLEKIR--IQPWIRPKAGIFLWCELPTDINIQKL 407
L+ G Y +H+ ++ +L + ++H LE+ I W P G ++W ++ + +
Sbjct 371 LSQGYYEEHLTWVRRKLKERRDAAVHFLERYAGDIATWRIPAGGFYIWVTFHKNLPVSRF 430
Query 408 MSYCTEKGVILALG 421
++ V++ G
Sbjct 431 FYELLKRQVLVNPG 444
>P77730 Uncharacterized HTH-type transcriptional regulator YdcR
[Escherichia coli (strain K12)]
Length=468
Score = 147 bits (371), Expect = 2e-42
Identities = 122/461 (26%), Positives = 217/461 (47%), Gaps = 37/461 (8%)
Query 1 MTKIEQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRA 60
M K +Q+ + +Q+ S PG RLPS+R S TV +AY+ + S G I +R
Sbjct 1 MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARP 60
Query 61 GSGFFVC--------APLEPLILSHIEPIQDQNLDPLKISRQ---LLEASSFLIKAGCGW 109
SG++V AP+ P+ I D L+ SR + AS+F
Sbjct 61 QSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAF-------- 112
Query 110 LPDDWM-PHEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQIL 168
PD + P + L +++ SK + + + P G + LR+ +ARR + I ++P++I+
Sbjct 113 -PDPRLFPLQQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPDEIV 171
Query 169 LTDSGSYSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRY-TPDGPDIEAF 227
+T +++L + + +PGD V++++PC++ L+ ++K +SV +G D++A
Sbjct 172 ITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQAL 231
Query 228 KQAIIEHHPRLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETSASP 287
+ A+ E+ + + NP G TL+ K QLV+L+ N+ ++EDD++S+
Sbjct 232 ELALQEYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREK 291
Query 288 RL--SALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHV 345
L A D ++ SFSK L R G+ V + + L++ ++ S ++
Sbjct 292 PLPAKAWDRHDGVLHCSSFSKCLVPGFRIGW-VAAGKHARKIQRLQLMSTLSTSSPMQLA 350
Query 346 LYKILTHGGYRKHIEQLKIRLAD-------AMIISIHRLEKIRIQPWIRPKAGIFLWCEL 398
L L+ Y H+ +L+ +LA+ A++ + KI +G FLW EL
Sbjct 351 LVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIH-----HNDSGYFLWLEL 405
Query 399 PTDINIQKLMSYCTEKGVILALGNSFGEAHTFQNFLRFNIA 439
P ++ +L + +A G F + F RFN A
Sbjct 406 PEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTA 446
>Q2FKF1 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain USA300)]
Length=442
Score = 146 bits (368), Expect = 4e-42
Identities = 104/404 (26%), Positives = 192/404 (48%), Gaps = 11/404 (3%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH------ 77
M++PS R LA Q N + T++ + E + + G I ++ GSG +V L +++
Sbjct 1 MKIPSHRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 78 IEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMN 137
+ Q ++ +++ ++ E I G L MPH L+KA+ +T+
Sbjct 61 LWSSQQRSQYTVQLINKI-ETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFG 119
Query 138 YSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPC 197
Y++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P
Sbjct 120 YNNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPS 179
Query 198 YFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSK 257
Y + + + + I V Y +I+ I + +NPTG +L+ +
Sbjct 180 YIHSTNVFEQLNFRHIDVPYNQIN-EIDTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQ 238
Query 258 AHQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGY 316
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+
Sbjct 239 KKNIITYSERHNIPIIEDDIFRDIFFSDPTPSIKTYDKLGKVIHISSFSKTIAPAIRIGW 298
Query 317 IVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHR 376
IV + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++
Sbjct 299 IVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNI 358
Query 377 LEKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
L + I W P G F+W DI+I+ L K IL
Sbjct 359 LNNLFKDIAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>Q5HJR1 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain COL)]
Length=442
Score = 146 bits (368), Expect = 4e-42
Identities = 104/404 (26%), Positives = 192/404 (48%), Gaps = 11/404 (3%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH------ 77
M++PS R LA Q N + T++ + E + + G I ++ GSG +V L +++
Sbjct 1 MKIPSHRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 78 IEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMN 137
+ Q ++ +++ ++ E I G L MPH L+KA+ +T+
Sbjct 61 LWSSQQRSQYTVQLINKI-ETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFG 119
Query 138 YSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPC 197
Y++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P
Sbjct 120 YNNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPS 179
Query 198 YFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSK 257
Y + + + + I V Y +I+ I + +NPTG +L+ +
Sbjct 180 YIHSTNVFEQLNFRHIDVPYNQIN-EIDTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQ 238
Query 258 AHQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGY 316
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+
Sbjct 239 KKNIITYSERHNIPIIEDDIFRDIFFSDPTPSIKTYDKLGKVIHISSFSKTIAPAIRIGW 298
Query 317 IVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHR 376
IV + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++
Sbjct 299 IVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNI 358
Query 377 LEKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
L + I W P G F+W DI+I+ L K IL
Sbjct 359 LNNLFKDIAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>Q2G1P1 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain NCTC 8325 / PS 47)]
Length=442
Score = 146 bits (368), Expect = 4e-42
Identities = 104/404 (26%), Positives = 192/404 (48%), Gaps = 11/404 (3%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH------ 77
M++PS R LA Q N + T++ + E + + G I ++ GSG +V L +++
Sbjct 1 MKIPSHRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 78 IEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMN 137
+ Q ++ +++ ++ E I G L MPH L+KA+ +T+
Sbjct 61 LWSSQQRSQYTVQLINKI-ETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFG 119
Query 138 YSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPC 197
Y++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P
Sbjct 120 YNNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPS 179
Query 198 YFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSK 257
Y + + + + I V Y +I+ I + +NPTG +L+ +
Sbjct 180 YIHSTNVFEQLNFRHIDVPYNQIN-EIDTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQ 238
Query 258 AHQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGY 316
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+
Sbjct 239 KKNIITYSERHNIPIIEDDIFRDIFFSDPTPSIKTYDKLGKVIHISSFSKTIAPAIRIGW 298
Query 317 IVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHR 376
IV + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++
Sbjct 299 IVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNI 358
Query 377 LEKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
L + I W P G F+W DI+I+ L K IL
Sbjct 359 LNNLFKDIAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>Q7A875 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain N315)]
Length=442
Score = 144 bits (362), Expect = 3e-41
Identities = 103/404 (25%), Positives = 190/404 (47%), Gaps = 11/404 (3%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH------ 77
M++P R LA Q N + T++ + E + + G I ++ GSG +V L +++
Sbjct 1 MKIPPQRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 78 IEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMN 137
+ Q ++ +++ ++ E I G L MPH L+KA+ +T+
Sbjct 61 LWSSQQRSQYTVQLINKI-ETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFG 119
Query 138 YSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPC 197
Y++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P
Sbjct 120 YNNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPS 179
Query 198 YFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSK 257
Y + + + + I V Y +I I + +NPTG +L+ +
Sbjct 180 YIHSTNVFEQLNFRHIDVPYNQIN-EINTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQ 238
Query 258 AHQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGY 316
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+
Sbjct 239 KKNIITYSERHNIPIIEDDIFRDIFFSDPTPAIKTYDKLGKVIHISSFSKTIAPAIRIGW 298
Query 317 IVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHR 376
IV + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++
Sbjct 299 IVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNI 358
Query 377 LEKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
L + I W P G F+W DI+I+ L K IL
Sbjct 359 LNNLFKDIAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>Q99XA5 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain Mu50 / ATCC 700699)]
Length=442
Score = 144 bits (362), Expect = 3e-41
Identities = 103/404 (25%), Positives = 190/404 (47%), Gaps = 11/404 (3%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH------ 77
M++P R LA Q N + T++ + E + + G I ++ GSG +V L +++
Sbjct 1 MKIPPQRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 78 IEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMN 137
+ Q ++ +++ ++ E I G L MPH L+KA+ +T+
Sbjct 61 LWSSQQRSQYTVQLINKI-ETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFG 119
Query 138 YSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPC 197
Y++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P
Sbjct 120 YNNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPS 179
Query 198 YFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSK 257
Y + + + + I V Y +I I + +NPTG +L+ +
Sbjct 180 YIHSTNVFEQLNFRHIDVPYNQIN-EINTIIDRFINFKNKAIYIEPRFNNPTGRSLTNEQ 238
Query 258 AHQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGY 316
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+
Sbjct 239 KKNIITYSERHNIPIIEDDIFRDIFFSDPTPAIKTYDKLGKVIHISSFSKTIAPAIRIGW 298
Query 317 IVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHR 376
IV + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++
Sbjct 299 IVASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNI 358
Query 377 LEKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
L + I W P G F+W DI+I+ L K IL
Sbjct 359 LNNLFKDIAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>Q2YUS3 HTH-type transcriptional regulator NorG [Staphylococcus
aureus (strain bovine RF122 / ET3-1)]
Length=442
Score = 143 bits (361), Expect = 3e-41
Identities = 106/403 (26%), Positives = 191/403 (47%), Gaps = 9/403 (2%)
Query 24 MRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFFVCAPLEPLILSH--IEPI 81
M++PS R LA Q N + T++ + E + + G I ++ GSG +V L +++ E +
Sbjct 1 MKIPSQRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMM 60
Query 82 QDQNLDPLKISRQLL---EASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMNY 138
+ + + QL+ E + I G L MPH L+KA+ +T+ Y
Sbjct 61 LWSSRQRSQYTVQLINKIETDASYIHISKGELGQPLMPHIQLKKAMSNTASHIEDLSFGY 120
Query 139 SSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPCY 198
++ G LR+++ R+ + INV E +++T ++I L+ L ++ + P Y
Sbjct 121 NNGYGYIKLRDIIVERMSKQGINVGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPSY 180
Query 199 FNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNSGIHNPTGATLSQSKA 258
+ + + + I Y + I + LYI +NPTG +L+ +
Sbjct 181 IHSTNVFEQLNFRHIDAPYNQINEINTIIDRFINFKNKALYI-EPRFNNPTGCSLTNEQK 239
Query 259 HQLVSLIEHANMVVVEDDIFSD-FETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGYI 317
+++ E N+ ++EDDIF D F + +P + D L I+I SFSKT++ ++R G+I
Sbjct 240 QNIITYSERHNIPIIEDDIFRDIFFSDPTPAIKTFDKLGKVIHISSFSKTIAPAIRIGWI 299
Query 318 VTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHRL 377
V + I+ L D+++ + + S V+Y++L + Y KH+ +L+ L D ++ L
Sbjct 300 VASEKIIEQLADVRMQIDYGSSILSQMVVYEMLKNKSYDKHLVKLRYVLKDKRDFMLNIL 359
Query 378 EKI--RIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVIL 418
+ I W G F+W DI+I+ L K IL
Sbjct 360 NNLFKDIAHWEVSSGGYFVWLVFKIDIDIKYLFYELLSKEKIL 402
Score = 21.6 bits (44), Expect = 0.95
Identities = 8/23 (35%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 330 LKVATSFSHNNFSAHVLYKILTH 352
++++ +F N H LYKI T+
Sbjct 416 IRLSFAFESNENIKHALYKIYTY 438
Score = 18.9 bits (37), Expect = 6.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (15%)
Query 315 GYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQLKIRLADA 369
GY V W+ + ID+ + F + KIL + GY ++ IRL+ A
Sbjct 375 GYFV----WLVFKIDIDIKYLF----YELLSKEKILINPGYIYGSKEKSIRLSFA 421
>P39389 Uncharacterized HTH-type transcriptional regulator YjiR
[Escherichia coli (strain K12)]
Length=470
Score = 139 bits (351), Expect = 1e-39
Identities = 118/454 (26%), Positives = 215/454 (47%), Gaps = 22/454 (5%)
Query 1 MTKIEQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRA 60
MT+ + + + ++++ G +LPSVRSL+++ S+STV AY+ + +M LI +
Sbjct 1 MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTLETMKLITPQP 60
Query 61 GSGFFVCA-----PLEPLILSHIEPIQ----DQNLDPLKISRQLLEASSFLIKAGCGWLP 111
SG+FV P+ P+ P++ DQ LD L+ + S ++ P
Sbjct 61 RSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEA-----HSDSSIVPLSKS-TP 114
Query 112 DDWMPH-EALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQILLT 170
D P + L + + + ++ ++ Y G LRE +AR + VT + I++T
Sbjct 115 DVEAPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARLMLDSGSVVTADDIIIT 174
Query 171 DSGSYSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPD-GPDIEAFKQ 229
S+ L + KPGD V ++ PCY+ +L+ VKVI + P+ G +EA +
Sbjct 175 SGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALEL 234
Query 230 AIIEHHPRLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETS-ASPR 288
A+ + + I +NP G + ++ ++SL + ++V+ EDD++ + T PR
Sbjct 235 ALEQWPIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPR 294
Query 289 -LSALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLY 347
+ + D + SFSK+++ LR G+ V + D L+ +K A S + +
Sbjct 295 TIHSWDIDGRVLLCSSFSKSIAPGLRVGW-VAPGRYHDKLMHMKYAISSFNVPSTQMAAA 353
Query 348 KILTHGGYRKHIEQLK-IRLADAMIISIHRLEKIRIQPWI-RPKAGIFLWCELPTDINIQ 405
+ G Y +HI +++ I + + + E + I RPK G LW ELP +++
Sbjct 354 TFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGFLLWIELPEQVDMV 413
Query 406 KLMSYCTEKGVILALGNSFGEAHTFQNFLRFNIA 439
+ + +A G+ F + ++N LR N A
Sbjct 414 CVARQLCRMKIQVAAGSIFSASGKYRNCLRINCA 447
>H3ZPL1 Aromatic-amino-acid aminotransferase 1 [Thermococcus litoralis
(strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)]
Length=417
Score = 126 bits (317), Expect = 3e-35
Identities = 86/356 (24%), Positives = 166/356 (47%), Gaps = 15/356 (4%)
Query 94 QLLEASSFLIKAGCGWLPDDWMPHEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLAR 153
+L+E S + AG G + P E + + ++ + + + Y + G + LR LA
Sbjct 39 KLVETSDVISLAG-GLPAPETFPVEIIGEITKEVLEKHAAQALQYGTTKGFTPLRLALAE 97
Query 154 RLHTK-DINVTPEQILLTDSGSYSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKV 212
+ + DI ++ I+ T ++DLI R + PGD ++++ P Y K ++ +
Sbjct 98 WMRERYDIPISKVDIMTTSGSQQALDLIGRVFINPGDIIVVEAPTYLAALQAFKYYEPEF 157
Query 213 ISVRYTPDGPDIEAFKQAIIEHHP-----RLYITNSGIHNPTGATLSQSKAHQLVSLIEH 267
+ + +G +++ ++ + E ++ T NP G T+++ + +L+ L
Sbjct 158 VQIPLDDEGMNVDLLEEKLQELEKEGKKVKIVYTIPTFQNPAGVTMNEKRRKRLLELASQ 217
Query 268 ANMVVVEDDIFSDFETSASP--RLSALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWID 325
+ ++VED+ + + S P + A D IY+G+FSK L+ R G+I + +I
Sbjct 218 YDFIIVEDNPYGELRYSGEPVKPIKAWDEEGRVIYLGTFSKILAPGFRIGWIAAEPHFIR 277
Query 326 YLIDLKVATSFSHNNFSAHVLYKILTHGGYRKHIEQL----KIRLADAMIISIHRLEKIR 381
L K + N FS + +K + G KHI ++ K R DAM+ ++
Sbjct 278 KLEIAKQSVDLCTNTFSQVIAWKYVEGGYLDKHIPKIIEFYKPR-RDAMLKALEEFMPDG 336
Query 382 IQPWIRPKAGIFLWCELPTDINIQKLMSYCTEKGVILALGNSFGEAHTFQNFLRFN 437
++ W +P+ G+F+W LP I+ + ++ KGV G +F +N +R N
Sbjct 337 VK-WTKPEGGMFVWATLPEGIDTKLMLEKAVAKGVAYVPGEAFFAHRDVKNTMRLN 391
>Q72LL6 2-aminoadipate transaminase [Thermus thermophilus (strain
ATCC BAA-163 / DSM 7039 / HB27)]
Length=397
Score = 120 bits (302), Expect = 2e-33
Identities = 93/341 (27%), Positives = 151/341 (44%), Gaps = 16/341 (5%)
Query 108 GWLP-DDWMPHEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQ 166
G LP + P E +A ++ + YS G + LR +A I V PE+
Sbjct 39 GGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEW-----IGVRPEE 93
Query 167 ILLTDSGSYSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEA 226
+L+T ++DL+ + L G VLL+ P Y ++ + ++V +GPD++A
Sbjct 94 VLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDA 153
Query 227 FKQAIIEHHPRLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSD--FETS 284
++ + PR NPTG +L+ ++ +VVVEDD + + F +
Sbjct 154 LEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA 213
Query 285 ASPRLSAL---DGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNF 341
P L L G IY+GSFSK LS LR + V E + L+ K H
Sbjct 214 RLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADL-HTPM 272
Query 342 SAHVLYKILTHGGYRKHIEQLK---IRLADAMIISIHRLEKIRIQPWIRPKAGIFLWCEL 398
+L L G+ + +E+++ A AM+ ++ R E + + RPK G+F+W EL
Sbjct 273 LNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDR-EVPKEVRYTRPKGGMFVWMEL 331
Query 399 PTDINIQKLMSYCTEKGVILALGNSFGEAHTFQNFLRFNIA 439
P ++ + L E+ V G F +N LR + A
Sbjct 332 PKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYA 372
>P95957 Uncharacterized aminotransferase SSO0104 [Saccharolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)]
Length=401
Score = 114 bits (285), Expect = 5e-31
Identities = 80/343 (23%), Positives = 156/343 (45%), Gaps = 11/343 (3%)
Query 108 GWLPD-DWMPHEALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQ 166
G LPD P E ++K D +S + + Y++ G+S R L + I+ E+
Sbjct 35 GGLPDPQTFPVEEIKKIADDILLNSADKALQYTATAGISEFRRELVNLSRLRGISGIDER 94
Query 167 ILLTDSGSY-SIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIE 225
+ GS ++ +I LL PGD V+++ P Y ++ + IS+ T GPD++
Sbjct 95 NVFVTVGSQEALFMIFNILLDPGDNVVVEAPTYLAALNAMRTRKPNFISITVTEMGPDLD 154
Query 226 AFKQAIIEHHP-----RLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDI--F 278
++ I + H +L NP G T++ +L+ + + ++ EDD F
Sbjct 155 ELERKIKDAHSNGKKVKLMYVIPTAQNPAGTTMNTEDRKRLLEIASKYDFLIFEDDAYGF 214
Query 279 SDFETSASPRLSALDGLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSH 338
FE + P + A D IY +FSK L+ LR G+++ ++I + K
Sbjct 215 LVFEGESPPPIKAFDKEGRVIYTSTFSKILAPGLRLGWVIAHEDFIKEMELYKQNVDLHT 274
Query 339 NNFSAHVLYKILTHGGYRKHIEQLKIRLADAMIISIHRLEKI--RIQPWIRPKAGIFLWC 396
+ S ++ + + G + ++ +++ + + + +E W +P G+F++
Sbjct 275 PSLSQYIAMEAIRRGIIQNNLPKIRRVYKEKRDVMLEAIETYFPNDARWTKPVGGMFVFA 334
Query 397 ELPTDINIQKLMSYCTEKGVILALGNSFGEAHTFQNFLRFNIA 439
LP I+ K++ ++GV G+SF ++ +N +R N +
Sbjct 335 WLPQKIDTTKMLEKALQRGVAYVPGSSFYADYSGKNTMRINFS 377
>P96669 Uncharacterized HTH-type transcriptional regulator YdeL
[Bacillus subtilis (strain 168)]
Length=463
Score = 113 bits (282), Expect = 3e-30
Identities = 90/365 (25%), Positives = 165/365 (45%), Gaps = 22/365 (6%)
Query 5 EQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGF 64
+Q+ Y + + R+ GM+LPS R LA QL+ S +TV AYE++ + G I S+ SG+
Sbjct 17 QQLYRYFKENMHRGRIQKGMKLPSKRLLANQLSISQTTVERAYEQLAAEGYIVSKPRSGW 76
Query 65 FVCAPLEPLILSHIEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAI 124
F H + +Q E + I G + + P A RK++
Sbjct 77 FAD--------YHDSDFAYDRMPSTTPIQQEAEENKQWIDFHYGNVDSSYFPFSAWRKSM 128
Query 125 RDTSKDSVFELMNYSSPLGLSSLRELLARRLH-TKDINVTPEQILLTDSGSYSIDLICRF 183
++ EL LG LR L+A L+ ++ ++ PEQ+++ + ++C+
Sbjct 129 VNSLDQYGHELYRPGHVLGEFELRTLIAEYLYQSRGVHCGPEQVIIGAGNPILLQILCQ- 187
Query 184 LLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYITNS 243
+ +P ++ +DP Y R + + +++ ++ + +G I+ K E P L
Sbjct 188 VFEPNISIGYEDPGYPRARKIFEANRMNIVPIPVDDEGICIQKIK----EQQPNLVYVTP 243
Query 244 GIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETSAS--PRLSALDGLKNSIYI 301
G ++ ++ QL+ ++EDD +F + P L LD IY+
Sbjct 244 SHQFTLGTIMTINRRIQLLKWAAENQSFIIEDDYDGEFRYTGQPVPSLQGLDQHNRVIYM 303
Query 302 GSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAH---VLYKILTHGGYRKH 358
G+FSK+L SLR Y++ S + ++ TS S H L + + +G ++KH
Sbjct 304 GTFSKSLLPSLRISYMILPSPLLKKGHEI---TSLYKQTVSCHSQLTLAEFIKNGEWQKH 360
Query 359 IEQLK 363
I +++
Sbjct 361 INRMR 365
>O07578 Uncharacterized HTH-type transcriptional regulator YhdI
[Bacillus subtilis (strain 168)]
Length=469
Score = 112 bits (279), Expect = 7e-30
Identities = 103/424 (24%), Positives = 195/424 (46%), Gaps = 27/424 (6%)
Query 5 EQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGF 64
EQ+ + Q++ R+T G RLPS R L+ L+ S +T+ AYE++ + G ++S+ G+
Sbjct 17 EQLYTFFKQEISHARITKGTRLPSKRRLSSLLDVSTATIERAYEQLTAEGYVKSKPKIGW 76
Query 65 FVCAPLEPLILSHIEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPHEALRKAI 124
F A +EP + + Q Q++ P L + ++ I G + P A RK+I
Sbjct 77 F-AAEVEPGFPTAPDHFQ-QSVQP-----GLHQKNAPAIDFHQGSVDPTLFPFNAWRKSI 129
Query 125 RDTSKDSVFELMNYSSPLGLSSLRELLARRLH-TKDINVTPEQILLTDSGSYSIDLICRF 183
+ P G LR ++AR + ++ +N P QI++ + + +C
Sbjct 130 VKSLDRYSGSFHTSGDPQGEYELRHMIARFVRLSRGVNCEPGQIIIGAGTTVLLQNLC-L 188
Query 184 LLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDG--PDIEAFKQAIIEHHPRLYIT 241
LKPG + ++P + R + + + + V + +G PD E ++Q +P L T
Sbjct 189 SLKPGTKIGFEEPGFHRSRRMFEANHMDVTPICSDAEGVLPD-ELYRQ-----NPYLMYT 242
Query 242 NSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETSAS--PRLSALDGLKNSI 299
P G ++ ++ +L++ N ++EDD +F S P L LD I
Sbjct 243 TPSHQFPIGTIMTITRRQELLAWAAETNSFIIEDDYDGEFRYSGHPIPSLQGLDPNGRVI 302
Query 300 YIGSFSKTLSASLRCGYIVTKSEWIDYL---IDLKVATSFSHNNFSAHVLYKILTHGGYR 356
Y+G+FSK+L SLR +++ E ++ + + L T +H+ + L + G ++
Sbjct 303 YLGTFSKSLLPSLRLSFMIVPPELMEPIQNNVQLMKQTVSAHSQLA---LADFIETGEWQ 359
Query 357 KHIEQLK--IRLADAMIISIHRLEKIRIQPWIRPKAGIFLWCELPTDINIQKLMSYCTEK 414
KHI +++ R A+++ R E + +G+ + L + ++ + +
Sbjct 360 KHINRMRSLYRKKHAVLLEAIRSELGNTVEILGKNSGLHILLRLLFPASEEEAIQAAADH 419
Query 415 GVIL 418
GV L
Sbjct 420 GVTL 423
>Q08792 Uncharacterized HTH-type transcriptional regulator YcxD
[Bacillus subtilis (strain 168)]
Length=444
Score = 108 bits (270), Expect = 9e-29
Identities = 116/461 (25%), Positives = 187/461 (41%), Gaps = 45/461 (10%)
Query 1 MTKIEQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRA 60
M K ++ +++ ++S G RLPS+R L+ + S STV+ A + + LI S
Sbjct 1 MEKYMSLLTRIEEMMQSTSYQEGDRLPSIRQLSARYQVSKSTVIRALQELEKRHLIYSVP 60
Query 61 GSGFFVCAPLEPLILSHIEPIQDQNLDPLKISRQLLEASSFLIKAGCGWLPDDWMPH--- 117
SG+++ PI P D P+
Sbjct 61 KSGYYIVKKSGKSKSGQPGPIDFATSAP----------------------DPDVFPYLDF 98
Query 118 -EALRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLHTKDINVTPEQILLTDSGSYS 176
+ KAI DT K+ +F Y +P GL SL +L + L T+ + I +T +
Sbjct 99 QHCINKAI-DTYKNDLFI---YGTPKGLPSLIRVLRKLLATQQVFADERHIFITSGVQQA 154
Query 177 IDLICRFLLKPG-DTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHH 235
+ L+C G + + ++ P Y L+ + I V+ T +G DI ++
Sbjct 155 LSLLCAMPFPNGKEKIAIEQPGYHLMVEQLETLGIPAIGVKRTEEGLDIAKVERLFQTES 214
Query 236 PRLYITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETS--ASPRLSALD 293
+ + T HNP G +LS+ +LV L E ++ +VEDD D E + A P L A D
Sbjct 215 IKFFYTMPRFHNPLGCSLSERDKQELVRLAEAYDVYLVEDDYLGDLEENKKADP-LYAYD 273
Query 294 GLKNSIYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHG 353
+ IY+ SFSK + LR G V D K + S L L G
Sbjct 274 LSSHVIYLKSFSKMMFPGLRVGAAVLPEALTDTFYAYKKLNDIDCSMISQAALEIYLKSG 333
Query 354 GYRKHIEQLK-------IRLADAMIISIHR-LEKIRIQPWIRPKAGIFLWCELPTDINIQ 405
Y +H E+++ +RL A I HR L R + LP D+
Sbjct 334 MYGRHKEKIRDSYKERSLRLHQA--IRTHRQLGSGRFTFSSGQAPCMHTHLVLPQDLPAS 391
Query 406 KLMSYCTEKGVIL-ALGNSFGEAHTFQNFLRFNIAQCMHPD 445
+++ ++GV+L A+ + + +N L+ NI+ D
Sbjct 392 RVIHRLEKQGVLLEAIDRHYLSDYPKENLLKINISNVKTED 432
>P94426 HTH-type transcriptional regulatory protein GabR [Bacillus
subtilis (strain 168)]
Length=479
Score = 101 bits (252), Expect = 3e-26
Identities = 92/370 (25%), Positives = 165/370 (45%), Gaps = 30/370 (8%)
Query 5 EQVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGF 64
+Q+ + +++ SR L P ++PS R LA+ L SV++V +AY+++L+ G + + GF
Sbjct 18 QQIYQKLKKEILSRNLLPHSKVPSKRELAENLKVSVNSVNSAYQQLLAEGYLYAIERKGF 77
Query 65 FVCAPLEPLILSHIEPIQDQNLDPLKISRQLLEA---SSFLIKAGCGWLPDDWMPHEALR 121
FV ++ + P + L E S I D P ++
Sbjct 78 FV---------EELDMFSAEEHPPFALPDDLKEIHIDQSDWISFSHMSSDTDHFPIKSWF 128
Query 122 KAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLH-TKDINVTPEQILLTDSGSYSIDLI 180
+ + + S L + S P G+ +R + R + T+ + PEQ+++ + L+
Sbjct 129 RCEQKAASRSYRTLGDMSHPQGIYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLL 188
Query 181 CRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRLYI 240
L K +++P Y LLK +V ++ G I I P + +
Sbjct 189 TELLPKEA-VYAMEEPGYRRMYQLLKNAGKQVKTIMLDEKGMSI----AEITRQQPDVLV 243
Query 241 TNSGIHNPTGATLSQSKAHQLVS-LIEHANMVVVEDDIFSDF--ETSASPRLSALDGLKN 297
T P+G + S+ QL++ E ++EDD S+F + + P L +LD +N
Sbjct 244 TTPSHQFPSGTIMPVSRRIQLLNWAAEEPRRYIIEDDYDSEFTYDVDSIPALQSLDRFQN 303
Query 298 SIYIGSFSKTLSASLRCGYIVTKSEWIDYL----IDLKVATSFSHNNFSAHVLYKILTHG 353
IY+G+FSK+L LR Y+V E + DL+ +S + L + + G
Sbjct 304 VIYMGTFSKSLLPGLRISYMVLPPELLRAYKQRGYDLQTCSSLTQ-----LTLQEFIESG 358
Query 354 GYRKHIEQLK 363
Y+KHI+++K
Sbjct 359 EYQKHIKKMK 368
>P49309 Probable rhizopine catabolism regulatory protein MocR
[Rhizobium meliloti]
Length=493
Score = 97.1 bits (240), Expect = 9e-25
Identities = 86/368 (23%), Positives = 159/368 (43%), Gaps = 16/368 (4%)
Query 6 QVIHYVDQQLKSRRLTPGMRLPSVRSLAKQLNFSVSTVVNAYERMLSMGLIESRAGSGFF 65
Q+ + ++ + L RLP R +A+ L S +TV+ Y+ +L+ G +ESR+GSG +
Sbjct 15 QLYEKLRAEILAGHLKADTRLPPTRMMAEDLGVSRNTVITTYDALLAEGYLESRSGSGTW 74
Query 66 VCAPLEPLILSHIEPIQDQNLDPLKISRQLLEASSF------LIKAGCGWLPDDWMPHEA 119
V A L P ++ + L + A I G+ P
Sbjct 75 V-ATLPPDAVTARNSVGRAGAPSLSSRGMRMAAQPRDRTIPDRIAFHPGYPEIKAFPFST 133
Query 120 LRKAIRDTSKDSVFELMNYSSPLGLSSLRELLARRLH-TKDINVTPEQILLTDSGSYSID 178
+ ++ ++ S +L Y G L+ +A L ++ + PEQ+++ + ++D
Sbjct 134 WARLLKRHARYSHEDLYGYHWVTGHPRLKAAIAEYLRASRGVECAPEQVIVVNGTQAALD 193
Query 179 LICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEHHPRL 238
++ R L+ GD +++P Y + L K++ + DG +E + PRL
Sbjct 194 ILARMLVDEGDICWMEEPGYIGAQNSLLSAGAKLVPLPVERDGWSLEDETRP----SPRL 249
Query 239 YITNSGIHNPTGATLSQSKAHQLVSLIEHANMVVVEDDIFSDFETSASPRLSALDGLKNS 298
P G + +L+ + E + +VEDD S++ P + A+ GL S
Sbjct 250 IFVTPSCQWPLGCLMRMEDRLRLLQIGERHDAWIVEDDYDSEYRFRGRP-VPAMQGLDKS 308
Query 299 ---IYIGSFSKTLSASLRCGYIVTKSEWIDYLIDLKVATSFSHNNFSAHVLYKILTHGGY 355
IY+G+F+KTL SLR G+IV + D + T + L ++ G +
Sbjct 309 GRVIYMGTFAKTLFPSLRIGFIVVPPQLADGFKRVVSNTGHYPSLLLQAALADFISEGYF 368
Query 356 RKHIEQLK 363
H+ +++
Sbjct 369 ATHLRRMR 376
Lambda K H a alpha
0.324 0.138 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2966310
Database: fd6399818687b36503a6e457d3ee1649.SwissProt.fasta
Posted date: Jun 1, 2024 10:06 PM
Number of letters in database: 8,119
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
