BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6e802af9ed30e34f8c49cdc2e286c445.TrEMBL.fasta
18 sequences; 4,667 total letters
Query= ACIAD1904
Length=185
Score E
Sequences producing significant alignments: (Bits) Value
Q6FB31 Molybdopterin synthase catalytic subunit [Acinetobacter ba... 390 1e-144
A0A7G2SCH1 Molybdopterin synthase catalytic subunit [Acinetobacte... 362 6e-134
A0A3A8EZ62 Molybdopterin synthase catalytic subunit [Acinetobacte... 304 9e-111
A0A3D2SLB5 Molybdopterin synthase catalytic subunit [Acinetobacte... 299 8e-109
A0A7T9Z5Z0 Molybdopterin synthase catalytic subunit [Acinetobacte... 298 2e-108
A0A009Z9N9 Molybdopterin synthase catalytic subunit [Acinetobacte... 298 2e-108
A0A3R9BZZ6 Molybdopterin synthase catalytic subunit [Acinetobacte... 295 3e-107
N9DE16 Molybdopterin synthase catalytic subunit [Acinetobacter ur... 295 4e-107
A0A0M1I6R2 Molybdopterin synthase catalytic subunit [Acinetobacte... 280 1e-101
A0A1P8EH30 Molybdopterin synthase catalytic subunit [Acinetobacte... 280 1e-101
I7FL16 Molybdenum cofactor biosynthesis protein [Mycolicibacteriu... 93.6 4e-28
D5G1X8 Molybdopterin biosynthesis protein E2 [Mycobacterium sp. (... 90.5 6e-27
A0A045HUW8 Molybdenum cofactor biosynthesis protein E [Mycobacter... 82.4 8e-24
A7K6T2 Molybdopterin synthase catalytic subunit [Advenella mimiga... 65.5 4e-17
Q6LD46 Homeobox Otx1 [Rattus sp] 38.5 2e-07
Q2TUU2 Thyroid hormone receptor alpha [Schistosoma mansoni] 39.7 2e-07
Q2TUU7 Thyroid hormone receptor alpha [Schistosoma mansoni] 39.7 2e-07
Q91ZJ3 Otx1 [Mus musculus] 38.5 4e-07
>Q6FB31 Molybdopterin synthase catalytic subunit [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=184
Score = 390 bits (1002), Expect = 1e-144
Identities = 183/184 (99%), Positives = 184/184 (100%), Gaps = 0/184 (0%)
Query 1 LIVRLYFYRQLLEANMKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAV 60
+IVRLYFYRQLLEANMKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAV
Sbjct 1 MIVRLYFYRQLLEANMKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAV 60
Query 61 QALKYTSYTPVAEKMIRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREA 120
QALKYTSYTPVAEKMIRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREA
Sbjct 61 QALKYTSYTPVAEKMIRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREA 120
Query 121 FQACEEAVERVKHEVPIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHH 180
FQACEEAVERVKHEVPIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHH
Sbjct 121 FQACEEAVERVKHEVPIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHH 180
Query 181 NHQH 184
NHQH
Sbjct 181 NHQH 184
>A0A7G2SCH1 Molybdopterin synthase catalytic subunit [Acinetobacter
sp]
Length=169
Score = 362 bits (930), Expect = 6e-134
Identities = 169/169 (100%), Positives = 169/169 (100%), Gaps = 0/169 (0%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH
Sbjct 121 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 169
>A0A3A8EZ62 Molybdopterin synthase catalytic subunit [Acinetobacter
guerrae]
Length=168
Score = 304 bits (778), Expect = 9e-111
Identities = 148/172 (86%), Positives = 158/172 (92%), Gaps = 7/172 (4%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQ++DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV+ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQAQDLSLDSFDSISEFPECGGIGIFQGTVRNHHEGRAVKALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDITQKYGVSYVRVIHRIG LDIGG AIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDITQKYGVSYVRVIHRIGFLDIGGMAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHH--HSEHH-HNHHNHQH 184
PIWKEEFY+DG+SQFVEGCCIRKD H+ + HHH HSEHH H+HH+H H
Sbjct 121 PIWKEEFYMDGTSQFVEGCCIRKD----HDSSEHHHDQHSEHHSHSHHHHSH 168
>A0A3D2SLB5 Molybdopterin synthase catalytic subunit [Acinetobacter
ursingii]
Length=165
Score = 299 bits (765), Expect = 8e-109
Identities = 145/169 (86%), Positives = 149/169 (88%), Gaps = 4/169 (2%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS+DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSQDLSLDSFDSISEFPECGGIGIFQGTVRNHHEGRAVTALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI QKYGV+YVRVIHRIGALDIGGTAIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDIIQKYGVAYVRVIHRIGALDIGGTAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFY DGSSQFVEGCCIRKD H+ H H HH HH H H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKD----HDSVEHTHTHSTHHKHHQHSH 165
>A0A7T9Z5Z0 Molybdopterin synthase catalytic subunit [Acinetobacter
ursingii]
Length=165
Score = 298 bits (762), Expect = 2e-108
Identities = 145/169 (86%), Positives = 148/169 (88%), Gaps = 4/169 (2%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS+DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSQDLSLDSFDSISEFPECGGIGIFQGTVRNHHEGRAVTALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI QKYGV YVRVIHRIGALDIGGTAIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDIIQKYGVPYVRVIHRIGALDIGGTAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFY DGSSQFVEGCCIRKD H+ H H HH HH H H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKD----HDSIEHTHTHSAHHKHHQHSH 165
>A0A009Z9N9 Molybdopterin synthase catalytic subunit [Acinetobacter
sp. 479375]
Length=165
Score = 298 bits (762), Expect = 2e-108
Identities = 145/169 (86%), Positives = 148/169 (88%), Gaps = 4/169 (2%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS+DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSQDLSLDSFDSISEFPECGGIGIFQGTVRNHHEGRAVTALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI QKYGV YVRVIHRIGALDIGGTAIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDIIQKYGVPYVRVIHRIGALDIGGTAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFY DGSSQFVEGCCIRKD H+ H H HH HH H H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKD----HDSIEHTHTHSAHHKHHQHSH 165
>A0A3R9BZZ6 Molybdopterin synthase catalytic subunit [Acinetobacter
sp. FDAARGOS_515]
Length=165
Score = 295 bits (755), Expect = 3e-107
Identities = 144/169 (85%), Positives = 148/169 (88%), Gaps = 4/169 (2%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS+DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSQDLSLDNFDSISEFPECGGIGIFQGTVRNHHEGRAVTALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI QKYGV+YVRVIHRIGAL IGGTAIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDIIQKYGVAYVRVIHRIGALGIGGTAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFY DGSSQFVEGCCIRKD H+ H H HH HH H H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKD----HDSIEHTHTHSAHHKHHQHSH 165
>N9DE16 Molybdopterin synthase catalytic subunit [Acinetobacter
ursingii ANC 3649]
Length=165
Score = 295 bits (754), Expect = 4e-107
Identities = 143/169 (85%), Positives = 148/169 (88%), Gaps = 4/169 (2%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS+DLSLD FDSI+EFPECGGIGIFQGTVRNHHEGRAV ALKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSQDLSLDNFDSISEFPECGGIGIFQGTVRNHHEGRAVTALKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI QKYGV+YVRVIHRIG L IGGTAIIAVAYA HRREAFQACEEAVERVKHEV
Sbjct 61 IRQIEQDIIQKYGVAYVRVIHRIGTLGIGGTAIIAVAYAAHRREAFQACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
PIWKEEFY DGSSQFVEGCCIRKD H+ H+H HH HH H H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKD----HDSIEHNHTHSAHHKHHQHSH 165
>A0A0M1I6R2 Molybdopterin synthase catalytic subunit [Acinetobacter
sp. C15]
Length=160
Score = 280 bits (717), Expect = 1e-101
Identities = 135/162 (83%), Positives = 140/162 (86%), Gaps = 2/162 (1%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS DL+LD FD I++FP CGGIGIFQGTVRNHH GRAV LKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSVDLTLDSFDPISDFPACGGIGIFQGTVRNHHNGRAVSGLKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI K+G +YVRVIHRIG LDIGG AIIAVAYAPHRREAF ACEEAVERVKHEV
Sbjct 61 IRQIEQDIMNKHGAAYVRVIHRIGQLDIGGMAIIAVAYAPHRREAFAACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHH 177
PIWKEEFY DGSSQFVEGCCIRKDH H H D H HH EH H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKDHHHDHID--HSHHHEHQH 160
>A0A1P8EH30 Molybdopterin synthase catalytic subunit [Acinetobacter
soli]
Length=160
Score = 280 bits (717), Expect = 1e-101
Identities = 135/162 (83%), Positives = 140/162 (86%), Gaps = 2/162 (1%)
Query 16 MKEFQRVQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
MKEFQRVQS DL+LD FD I++FP CGGIGIFQGTVRNHH GRAV LKYTSYTPVAEKM
Sbjct 1 MKEFQRVQSVDLTLDSFDPISDFPACGGIGIFQGTVRNHHNGRAVSGLKYTSYTPVAEKM 60
Query 76 IRQIEQDITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEV 135
IRQIEQDI K+G +YVRVIHRIG LDIGG AIIAVAYAPHRREAF ACEEAVERVKHEV
Sbjct 61 IRQIEQDIMNKHGAAYVRVIHRIGQLDIGGMAIIAVAYAPHRREAFAACEEAVERVKHEV 120
Query 136 PIWKEEFYIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHH 177
PIWKEEFY DGSSQFVEGCCIRKDH H H D H HH EH H
Sbjct 121 PIWKEEFYTDGSSQFVEGCCIRKDHHHDHID--HSHHHEHQH 160
>I7FL16 Molybdenum cofactor biosynthesis protein [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=142
Score = 93.6 bits (231), Expect = 4e-28
Identities = 48/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (3%)
Query 18 EFQRVQ--SEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKM 75
E RV+ + +SL ++++ G + F G VR+H GR+V L+Y+++ P A++
Sbjct 4 EIVRVELTEDPISLTEYEALVAHEAAGAVVGFAGVVRDHDGGRSVLRLEYSAH-PTAQRT 62
Query 76 IRQIEQDIT-QKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHE 134
+ ++ ++I Q GV + V HRIG L IG A++A A HRR AF+ C V+ VK
Sbjct 63 LEEVAEEIAAQSDGVRAIAVSHRIGPLKIGDAALVAAVAADHRRAAFETCARLVDVVKER 122
Query 135 VPIWKEEFYIDGSSQFV 151
+P+WK + + DG+ ++V
Sbjct 123 LPVWKHQHFADGTDEWV 139
>D5G1X8 Molybdopterin biosynthesis protein E2 [Mycobacterium sp.
(strain DSM 3803 / JC1)]
Length=141
Score = 90.5 bits (223), Expect = 6e-27
Identities = 46/130 (35%), Positives = 70/130 (54%), Gaps = 0/130 (0%)
Query 22 VQSEDLSLDCFDSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKMIRQIEQ 81
V E +SL + + P G I F G +R+H GRAV L+Y+++ + + + +
Sbjct 9 VTEEPISLIEHEQLVSRPTAGAIVGFCGVIRDHDGGRAVTRLEYSAHPGAQQTLADIVTE 68
Query 82 DITQKYGVSYVRVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEVPIWKEE 141
+ GVS V HR+GAL IG A++ A HRR AF C VE VK +P+WK +
Sbjct 69 VAAEAEGVSAVAASHRVGALRIGEAALVVAVAADHRRAAFDTCALLVEAVKARLPVWKHQ 128
Query 142 FYIDGSSQFV 151
F+ D + ++V
Sbjct 129 FFADSTDEWV 138
>A0A045HUW8 Molybdenum cofactor biosynthesis protein E [Mycobacterium
tuberculosis]
Length=141
Score = 82.4 bits (202), Expect = 8e-24
Identities = 39/119 (33%), Positives = 63/119 (53%), Gaps = 0/119 (0%)
Query 33 DSIAEFPECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKMIRQIEQDITQKYGVSYV 92
+ + G I F G +R+ GR V L+Y+++ A+ + + + + GV V
Sbjct 20 EELVSHRSAGAIVGFVGMIRDRDGGRGVLRLEYSAHPSAAQVLADLVAEVAEESSGVRAV 79
Query 93 RVIHRIGALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEVPIWKEEFYIDGSSQFV 151
HRIG L +G A++A A HRR AF C VE +K +P+WK +F+ DG+ ++V
Sbjct 80 AASHRIGVLQVGEAALVAAVAADHRRAAFGTCAHLVETIKARLPVWKHQFFEDGTDEWV 138
>A7K6T2 Molybdopterin synthase catalytic subunit [Advenella mimigardefordensis]
Length=168
Score = 65.5 bits (158), Expect = 4e-17
Identities = 32/113 (28%), Positives = 55/113 (49%), Gaps = 0/113 (0%)
Query 40 ECGGIGIFQGTVRNHHEGRAVQALKYTSYTPVAEKMIRQIEQDITQKYGVSYVRVIHRIG 99
+ G + F G VR++ + Q L Y + E+ + I Q Q++ + ++HR+G
Sbjct 25 QAGAVASFVGYVRDYSASQPTQELFLEHYPGMCEQELADIAQQAMQRWDIVQSTIVHRVG 84
Query 100 ALDIGGTAIIAVAYAPHRREAFQACEEAVERVKHEVPIWKEEFYIDGSSQFVE 152
AL + + HR +AF ACE ++ +K P WK E DG + +V+
Sbjct 85 ALSRQQQIVFVGIASAHRGDAFAACEYIMDALKTRAPFWKRETLADGKAFWVQ 137
>Q6LD46 Homeobox Otx1 [Rattus sp]
Length=148
Score = 38.5 bits (88), Expect = 2e-07
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQH 184
H HPH P S HHH+HH+H H
Sbjct 102 HHHPHAHHPLSQSSGHHHHHHHHHH 126
Score = 37.0 bits (84), Expect = 7e-07
Identities = 16/45 (36%), Positives = 20/45 (44%), Gaps = 20/45 (44%)
Query 160 HSHPHEDTP---------HHHH-----------SEHHHNHHNHQH 184
H HPH+ +P HHHH HHH+HH+H H
Sbjct 83 HHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHH 127
Score = 20.8 bits (42), Expect = 0.23
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 0/17 (0%)
Query 156 IRKDHSHPHEDTPHHHH 172
+ + H H HHHH
Sbjct 111 LSQSSGHHHHHHHHHHH 127
Score = 20.0 bits (40), Expect = 0.42
Identities = 9/28 (32%), Positives = 10/28 (36%), Gaps = 15/28 (54%)
Query 172 HSEH---------------HHNHHNHQH 184
HS H HH+HH H H
Sbjct 81 HSHHHPHQLSPMAPSSMAGHHHHHPHAH 108
>Q2TUU2 Thyroid hormone receptor alpha [Schistosoma mansoni]
Length=791
Score = 39.7 bits (91), Expect = 2e-07
Identities = 12/22 (55%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 162 HPHEDTPHHHHSEHHHNHHNHQ 183
H PHHHH HHH+HH+ Q
Sbjct 607 HQRNQHPHHHHQHHHHDHHHQQ 628
Score = 33.5 bits (75), Expect = 2e-05
Identities = 16/42 (38%), Positives = 18/42 (43%), Gaps = 10/42 (24%)
Query 143 YIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
Y DG+S HSH +HH HHH HH H H
Sbjct 447 YSDGNSPI-------NQHSHY---VSTNHHQPHHHQHHQHHH 478
Score = 32.7 bits (73), Expect = 4e-05
Identities = 10/24 (42%), Positives = 11/24 (46%), Gaps = 0/24 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQ 183
+ HPH HHHH HH Q
Sbjct 610 NQHPHHHHQHHHHDHHHQQQQQQQ 633
Score = 30.0 bits (66), Expect = 3e-04
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 164 HEDTPHHHHSEHHHNHHNHQH 184
++ + H HHH HH+H H
Sbjct 604 YDQHQRNQHPHHHHQHHHHDH 624
Score = 30.0 bits (66), Expect = 3e-04
Identities = 11/27 (41%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query 157 RKDHSHPHEDTPHHHHSEHHHNHHNHQ 183
R H H H HHH +HHH Q
Sbjct 609 RNQHPHHHH---QHHHHDHHHQQQQQQ 632
Score = 26.6 bits (57), Expect = 0.004
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 2/21 (10%)
Query 164 HEDTPHHHHSEHHHNHHNHQH 184
H+ H HH HH +HH+ H
Sbjct 607 HQRNQHPHH--HHQHHHHDHH 625
Score = 25.0 bits (53), Expect = 0.014
Identities = 11/29 (38%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query 156 IRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
I D + P H+ + HH HH HQH
Sbjct 446 IYSDGNSPINQHSHYVSTNHHQPHH-HQH 473
Score = 23.5 bits (49), Expect = 0.044
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 0/24 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQ 183
H H H HHH + Q
Sbjct 615 HHHQHHHHDHHHQQQQQQQQQQQQ 638
Score = 20.8 bits (42), Expect = 0.32
Identities = 10/23 (43%), Positives = 13/23 (57%), Gaps = 3/23 (13%)
Query 165 EDTPHHHH---SEHHHNHHNHQH 184
E+T HHHH + H + HQH
Sbjct 529 ENTFHHHHPLTTIHSGINPIHQH 551
Score = 18.9 bits (37), Expect = 1.3
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query 166 DTPHHHHSEHHHN-HHNHQH 184
DT + + + + HH+HQH
Sbjct 600 DTLSYDQHQRNQHPHHHHQH 619
Score = 16.5 bits (31), Expect = 7.2
Identities = 5/14 (36%), Positives = 6/14 (43%), Gaps = 0/14 (0%)
Query 169 HHHHSEHHHNHHNH 182
H HH H N+
Sbjct 549 HQHHQLPLQQHQNN 562
>Q2TUU7 Thyroid hormone receptor alpha [Schistosoma mansoni]
Length=1115
Score = 39.7 bits (91), Expect = 2e-07
Identities = 12/22 (55%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 162 HPHEDTPHHHHSEHHHNHHNHQ 183
H PHHHH HHH+HH+ Q
Sbjct 608 HQRNQHPHHHHQHHHHDHHHQQ 629
Score = 33.5 bits (75), Expect = 3e-05
Identities = 16/42 (38%), Positives = 18/42 (43%), Gaps = 10/42 (24%)
Query 143 YIDGSSQFVEGCCIRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
Y DG+S HSH +HH HHH HH H H
Sbjct 447 YSDGNSPI-------NQHSHY---VSTNHHQPHHHQHHQHHH 478
Score = 32.7 bits (73), Expect = 4e-05
Identities = 9/22 (41%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 163 PHEDTPHHHHSEHHHNHHNHQH 184
P++ + H HHH HH+H H
Sbjct 604 PYDQHQRNQHPHHHHQHHHHDH 625
Score = 32.7 bits (73), Expect = 4e-05
Identities = 10/24 (42%), Positives = 11/24 (46%), Gaps = 0/24 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQ 183
+ HPH HHHH HH Q
Sbjct 611 NQHPHHHHQHHHHDHHHQQQQQQQ 634
Score = 30.0 bits (66), Expect = 3e-04
Identities = 11/27 (41%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query 157 RKDHSHPHEDTPHHHHSEHHHNHHNHQ 183
R H H H HHH +HHH Q
Sbjct 610 RNQHPHHHH---QHHHHDHHHQQQQQQ 633
Score = 28.5 bits (62), Expect = 0.001
Identities = 8/21 (38%), Positives = 13/21 (62%), Gaps = 0/21 (0%)
Query 164 HEDTPHHHHSEHHHNHHNHQH 184
++ P+ H + H HH+HQH
Sbjct 600 NDTLPYDQHQRNQHPHHHHQH 620
Score = 26.6 bits (57), Expect = 0.005
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 2/21 (10%)
Query 164 HEDTPHHHHSEHHHNHHNHQH 184
H+ H HH HH +HH+ H
Sbjct 608 HQRNQHPHH--HHQHHHHDHH 626
Score = 25.0 bits (53), Expect = 0.014
Identities = 11/29 (38%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query 156 IRKDHSHPHEDTPHHHHSEHHHNHHNHQH 184
I D + P H+ + HH HH HQH
Sbjct 446 IYSDGNSPINQHSHYVSTNHHQPHH-HQH 473
Score = 23.5 bits (49), Expect = 0.045
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 0/24 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQ 183
H H H HHH + Q
Sbjct 616 HHHQHHHHDHHHQQQQQQQQQQQQ 639
Score = 20.4 bits (41), Expect = 0.43
Identities = 10/24 (42%), Positives = 13/24 (54%), Gaps = 4/24 (17%)
Query 165 EDTPHHHH----SEHHHNHHNHQH 184
E+T HHHH + H + HQH
Sbjct 529 ENTFHHHHHPLTTIHSGINPIHQH 552
Score = 19.6 bits (39), Expect = 0.76
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 0/21 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHH 180
H H H T H H HH
Sbjct 533 HHHHHPLTTIHSGINPIHQHH 553
>Q91ZJ3 Otx1 [Mus musculus]
Length=355
Score = 38.5 bits (88), Expect = 4e-07
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 160 HSHPHEDTPHHHHSEHHHNHHNHQH 184
H HPH P S HHH+HH+H H
Sbjct 277 HHHPHAHHPLSQSSGHHHHHHHHHH 301
Score = 37.0 bits (84), Expect = 1e-06
Identities = 16/45 (36%), Positives = 20/45 (44%), Gaps = 20/45 (44%)
Query 160 HSHPHEDTP---------HHHH-----------SEHHHNHHNHQH 184
H HPH+ +P HHHH HHH+HH+H H
Sbjct 258 HHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHH 302
Score = 20.8 bits (42), Expect = 0.30
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 0/17 (0%)
Query 156 IRKDHSHPHEDTPHHHH 172
+ + H H HHHH
Sbjct 286 LSQSSGHHHHHHHHHHH 302
Score = 20.0 bits (40), Expect = 0.52
Identities = 9/28 (32%), Positives = 10/28 (36%), Gaps = 15/28 (54%)
Query 172 HSEH---------------HHNHHNHQH 184
HS H HH+HH H H
Sbjct 256 HSHHHPHQLSPMAPSSMAGHHHHHPHAH 283
Lambda K H a alpha
0.326 0.139 0.441 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 565776
Database: 6e802af9ed30e34f8c49cdc2e286c445.TrEMBL.fasta
Posted date: May 12, 2024 2:32 AM
Number of letters in database: 4,667
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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