BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: f9fdbcc2b5bdb1a9d22d43c7128177bf.SwissProt.fasta
12 sequences; 5,625 total letters
Query= ACIAD1935
Length=374
Score E
Sequences producing significant alignments: (Bits) Value
Q3K999 Sigma54-dependent transcriptional regulator SfnR [Pseudomo... 336 3e-117
Q845S7 Sigma54-dependent transcriptional activator SfnR [Pseudomo... 327 1e-113
P17899 Transcriptional regulatory protein FlbD [Caulobacter vibri... 239 1e-78
Q9APD9 Transcriptional regulatory protein ZraR [Klebsiella oxytoca] 235 6e-77
P41789 DNA-binding transcriptional regulator NtrC [Salmonella typ... 234 2e-76
Q9I4N3 Response regulator protein FleR [Pseudomonas aeruginosa (s... 234 4e-76
Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)] 233 4e-76
P0AFB9 DNA-binding transcriptional regulator NtrC [Escherichia co... 233 1e-75
P0AFB8 DNA-binding transcriptional regulator NtrC [Escherichia co... 233 1e-75
P27713 Nif-specific regulatory protein [Herbaspirillum seropedicae] 233 4e-75
P25852 Transcriptional regulatory protein ZraR [Salmonella typhim... 230 5e-75
P71229 DNA-binding transcriptional activator HyfR [Escherichia co... 235 1e-74
>Q3K999 Sigma54-dependent transcriptional regulator SfnR [Pseudomonas
fluorescens (strain Pf0-1)]
Length=367
Score = 336 bits (861), Expect = 3e-117
Identities = 168/346 (49%), Positives = 243/346 (70%), Gaps = 8/346 (2%)
Query 12 QIFSLEGEQAQPLSIRAKALVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARH 71
Q+ +L A SIRA A V+ DP S+ LL ++++AP++ +LI GETGTGKELVARH
Sbjct 2 QLLTLPPSPALATSIRATAQVFEDPKSQALLAHLQQVAPSEASVLIIGETGTGKELVARH 61
Query 72 IHHLSGRKG-PFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDE 130
IH+LS R+ PF+AVNCGA ++ L E+ELFGHE G+FTGA + GWFE ADGGTLFLDE
Sbjct 62 IHNLSNRRNRPFIAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGWFEEADGGTLFLDE 121
Query 131 IGDLPLHLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFR 190
IGDLP+ +QVKLLRVLQEREV R+G+RK+IP+D+R++ ATNV LE+A+ A FR+DL +R
Sbjct 122 IGDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVLAATNVQLEKAINAGHFREDLYYR 181
Query 191 INIAQLELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRE 250
+N+ LEL PLR+R GDILPL +HF++ Y +++ + +SP L Y WPGNIRE
Sbjct 182 LNVVNLELSPLRDRPGDILPLTRHFIEAYSQRL-GYGRVTISPGAEHKLRGYSWPGNIRE 240
Query 251 LENIAHYAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFA 310
LEN+ H+ +L+ +I+++ L+ + N I++P + A + ++P +E +++F
Sbjct 241 LENVIHHTLLICRNGVIERDDLRLS----NLRIDRPDDQHATADDSPEALLERAFQKLFE 296
Query 311 APTLPSNLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYL 356
L +++E ++ +++ +C NQV T+ LLG++RNV RT L
Sbjct 297 QQA--GALHEKVEDALLRSAYRFCHYNQVHTASLLGLSRNVTRTRL 340
>Q845S7 Sigma54-dependent transcriptional activator SfnR [Pseudomonas
putida]
Length=366
Score = 327 bits (837), Expect = 1e-113
Identities = 168/348 (48%), Positives = 242/348 (70%), Gaps = 14/348 (4%)
Query 12 QIFSLEGEQAQPLSIRAKALVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARH 71
Q+ +L SIRA A V+ DP S+ LL ++++AP++ +LI GETGTGKELVARH
Sbjct 2 QLLTLPPSPTLATSIRATAQVFEDPRSQALLAHLQQVAPSEASVLIIGETGTGKELVARH 61
Query 72 IHHLSGRK-GPFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDE 130
IH+LSGR+ GPF+AVNCGA ++ L E+ELFGHE G+FTGA + GWFE A+GGTLFLDE
Sbjct 62 IHNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEANGGTLFLDE 121
Query 131 IGDLPLHLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFR 190
IGDLPL +QVKLLRVLQEREV R+G+RK+IP+++R++ ATNV LE+A+ A FR+DL +R
Sbjct 122 IGDLPLPIQVKLLRVLQEREVVRLGSRKSIPINVRVLAATNVQLEKAINAGHFREDLYYR 181
Query 191 INIAQLELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRE 250
+N+ L+L PLR+R GDILPL +HF++ Y +++ + LS L +Y WPGNIRE
Sbjct 182 LNVVTLQLHPLRDRPGDILPLARHFIRSYSDRL-GYGPVELSAKAQAKLVEYSWPGNIRE 240
Query 251 LENIAHYAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFA 310
LEN+ H+++L ++ + L+ + N IE+ E A +G+E L+R F+
Sbjct 241 LENVIHHSLLTCGDGTVQAQDLRLS----NLRIERQEEEPAG------NGVEDLLQRAFS 290
Query 311 A--PTLPSNLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYL 356
+L++++E ++ +++ +C NQV T+ LLG++RN+ RT L
Sbjct 291 RLYEEQSGDLYEKVENALLRSAYRFCHYNQVHTAQLLGLSRNITRTRL 338
>P17899 Transcriptional regulatory protein FlbD [Caulobacter vibrioides
(strain ATCC 19089 / CB15)]
Length=455
Score = 239 bits (611), Expect = 1e-78
Identities = 135/333 (41%), Positives = 197/333 (59%), Gaps = 13/333 (4%)
Query 29 KALVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSGR-KGPFLAVNC 87
K +V DP + +++L +++AP++ ILI GE+G+GKE++AR++H S R K PF++VNC
Sbjct 118 KPMVVRDPAMEQVIKLADQVAPSEASILITGESGSGKEVMARYVHGKSRRAKAPFISVNC 177
Query 88 GAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQ 147
AI + L ESELFGHE G+FTGA +R G FE ADGGTL LDEI ++ + LQ KLLR +Q
Sbjct 178 AAIPENLLESELFGHEKGAFTGAMARRIGKFEEADGGTLLLDEISEMDVRLQAKLLRAIQ 237
Query 148 EREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGD 207
ERE+ RVG K + V+IR++ +N DL QAV+ FR+DLL+R+N+ L L PLRER D
Sbjct 238 EREIDRVGGSKPVKVNIRILATSNRDLAQAVKDGTFREDLLYRLNVVNLRLPPLRERPAD 297
Query 208 ILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELENIAHYAVLVAEGHLI 267
++ L + F++KY E I S L + WPGN+RELEN H AVL++ G I
Sbjct 298 VISLCEFFVKKYSAANGIEEKPI-SAEAKRRLIAHRWPGNVRELENAMHRAVLLSAGPEI 356
Query 268 KKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPTLPSNLWDRLEQLII 327
+ F I P + + Q+ A+ + +EQ +I
Sbjct 357 -----------EEFAIRLPDGQPMAPAPDVAVARGAQMAADAASRAFVGSTVAEVEQQLI 405
Query 328 ATSFEYCQRNQVQTSVLLGITRNVMRTYLKRHN 360
+ E+C N+ + +LGI+ +R LK ++
Sbjct 406 IDTLEHCLGNRTHAANILGISIRTLRNKLKEYS 438
>Q9APD9 Transcriptional regulatory protein ZraR [Klebsiella oxytoca]
Length=443
Score = 235 bits (599), Expect = 6e-77
Identities = 122/243 (50%), Positives = 166/243 (68%), Gaps = 2/243 (1%)
Query 31 LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSGR-KGPFLAVNCGA 89
+V P + LL I +AP+D +LI GE+GTGKELVAR +H S R + P + +NC A
Sbjct 141 MVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCAA 200
Query 90 INDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQER 149
+N+ L ESELFGHE G+FTGA +R+G F ADGGTLFLDEIGD+ +QV+LLR +QER
Sbjct 201 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQER 260
Query 150 EVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGDIL 209
EV RVG+ + + VD+RL+ AT+ DL + V A +FRQDL +R+N+ +++ PLR R+ DI
Sbjct 261 EVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIP 320
Query 210 PLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELENIAHYAVLVAEGHLIKK 269
PL ++FLQ+Y E+ +K A +P + L Y WPGNIRELEN AV++ G I +
Sbjct 321 PLARYFLQRYAERNRK-AVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYISE 379
Query 270 EHL 272
L
Sbjct 380 REL 382
>P41789 DNA-binding transcriptional regulator NtrC [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=469
Score = 234 bits (597), Expect = 2e-76
Identities = 140/344 (41%), Positives = 201/344 (58%), Gaps = 8/344 (2%)
Query 19 EQAQPLSIRAKA----LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHH 74
EQ QP +I ++ P +++ ++I RL+ + I +LI GE+GTGKELVA +H
Sbjct 124 EQQQPRNIEVNGPTTDMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183
Query 75 LSGR-KGPFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGD 133
S R K PF+A+N AI L ESELFGHE G+FTGA R+G FE ADGGTLFLDEIGD
Sbjct 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243
Query 134 LPLHLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINI 193
+PL +Q +LLRVL + + RVG + VD+R++ AT+ +LE+ VQ +FR+DL R+N+
Sbjct 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLERRVQEGKFREDLFHRLNV 303
Query 194 AQLELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELEN 253
++ L PLRER+ DI L +HFLQ ++ EA L L P TAL WPGN+R+LEN
Sbjct 304 IRIHLPPLRERREDIPRLARHFLQVAARELGVEAKL-LHPETETALTRLAWPGNVRQLEN 362
Query 254 IAHYAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPT 313
+ ++A G + + L +LF+ + P+ SW + R
Sbjct 363 TCRWLTVMAAGQEVLIQDLP-GELFEASTPDSPSHLPPDSWATLLAQWADRALR-SGHQN 420
Query 314 LPSNLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYLK 357
L S LE+ ++ T+ + Q ++ + + LLG RN + LK
Sbjct 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464
>Q9I4N3 Response regulator protein FleR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=473
Score = 234 bits (596), Expect = 4e-76
Identities = 122/239 (51%), Positives = 163/239 (68%), Gaps = 2/239 (1%)
Query 35 DPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSGRKG-PFLAVNCGAINDQ 93
+P S+ LL+L R+A +D +LI GE+GTGKE++A +IH S R G PF+A+NC AI D
Sbjct 134 EPASRQLLELAARVARSDSTVLISGESGTGKEVLANYIHQQSPRAGKPFIAINCAAIPDN 193
Query 94 LAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQEREVTR 153
+ E+ LFGHE GSFTGA + G FE ADGGT+ LDEI ++PL LQ KLLRVLQEREV R
Sbjct 194 MLEATLFGHEKGSFTGAIAAQPGKFELADGGTILLDEISEMPLGLQAKLLRVLQEREVER 253
Query 154 VGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGDILPLFQ 213
VGARK I +DIR++ TN DL V A +FR+DL +R+++ L +PLRER DILPL +
Sbjct 254 VGARKPINLDIRVLATTNRDLAAEVAAGRFREDLYYRLSVFPLAWRPLRERPADILPLAE 313
Query 214 HFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELENIAHYAVLVAEGHLIKKEHL 272
L+K+ K+ A + L P L + WPGN+REL+N A+++ +G LI+ L
Sbjct 314 RLLRKHSRKMNLGA-VALGPEAAQCLVRHAWPGNVRELDNAIQRALILQQGGLIQPADL 371
>Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)]
Length=461
Score = 233 bits (595), Expect = 4e-76
Identities = 135/335 (40%), Positives = 199/335 (59%), Gaps = 27/335 (8%)
Query 31 LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSGR-KGPFLAVNCGA 89
++ + P ++ + ++A + +LI GE+GTGKEL+AR IH+ S R KGPF+ VNC A
Sbjct 145 ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAA 204
Query 90 INDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQER 149
+ + L ESELFGHE G+FTGA R+G FE A+ GTL LDEIG++PL LQ KLLR+LQER
Sbjct 205 LPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER 264
Query 150 EVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGDIL 209
E R+G + I VDIR++ ATN DL+ V+ FR+DL +R+N+ L L PLR+R+ DI
Sbjct 265 EFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDIS 324
Query 210 PLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELENIAHYAVLVAEGHLIKK 269
L HFLQK+ + +++ + + P ++ L + WPGNIREL N+ AV++ G +I
Sbjct 325 LLANHFLQKFSSENQRDI-IDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFS 383
Query 270 EHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPTLPSNLWD---RLEQLI 326
E L I QP + + AP NL + R+E+ I
Sbjct 384 EDLP-------PQIRQPVCNAGE---------------VKTAPVGERNLKEEIKRVEKRI 421
Query 327 IATSFEYCQRNQVQTSVLLGITRNVMRTYLKRHNL 361
I E + N+ +T+++LGI+R + L+ + +
Sbjct 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
>P0AFB9 DNA-binding transcriptional regulator NtrC [Escherichia
coli O157:H7]
Length=469
Score = 233 bits (593), Expect = 1e-75
Identities = 139/344 (40%), Positives = 201/344 (58%), Gaps = 8/344 (2%)
Query 19 EQAQPLSIRAKA----LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHH 74
EQ QP +++ ++ P +++ ++I RL+ + I +LI GE+GTGKELVA +H
Sbjct 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183
Query 75 LSGR-KGPFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGD 133
S R K PF+A+N AI L ESELFGHE G+FTGA R+G FE ADGGTLFLDEIGD
Sbjct 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243
Query 134 LPLHLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINI 193
+PL +Q +LLRVL + + RVG + VD+R++ AT+ +LEQ VQ +FR+DL R+N+
Sbjct 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303
Query 194 AQLELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELEN 253
++ L PLRER+ DI L +HFLQ ++ EA L L P AL WPGN+R+LEN
Sbjct 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL-LHPETEAALTRLAWPGNVRQLEN 362
Query 254 IAHYAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPT 313
+ ++A G + + L +LF++ E + SW + R
Sbjct 363 TCRWLTVMAAGQEVLIQDLP-GELFESTVAESTSQMQPDSWATLLAQWADRALR-SGHQN 420
Query 314 LPSNLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYLK 357
L S LE+ ++ T+ + Q ++ + + LLG RN + LK
Sbjct 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464
>P0AFB8 DNA-binding transcriptional regulator NtrC [Escherichia
coli (strain K12)]
Length=469
Score = 233 bits (593), Expect = 1e-75
Identities = 139/344 (40%), Positives = 201/344 (58%), Gaps = 8/344 (2%)
Query 19 EQAQPLSIRAKA----LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHH 74
EQ QP +++ ++ P +++ ++I RL+ + I +LI GE+GTGKELVA +H
Sbjct 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183
Query 75 LSGR-KGPFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGD 133
S R K PF+A+N AI L ESELFGHE G+FTGA R+G FE ADGGTLFLDEIGD
Sbjct 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243
Query 134 LPLHLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINI 193
+PL +Q +LLRVL + + RVG + VD+R++ AT+ +LEQ VQ +FR+DL R+N+
Sbjct 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303
Query 194 AQLELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELEN 253
++ L PLRER+ DI L +HFLQ ++ EA L L P AL WPGN+R+LEN
Sbjct 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL-LHPETEAALTRLAWPGNVRQLEN 362
Query 254 IAHYAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPT 313
+ ++A G + + L +LF++ E + SW + R
Sbjct 363 TCRWLTVMAAGQEVLIQDLP-GELFESTVAESTSQMQPDSWATLLAQWADRALR-SGHQN 420
Query 314 LPSNLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYLK 357
L S LE+ ++ T+ + Q ++ + + LLG RN + LK
Sbjct 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464
>P27713 Nif-specific regulatory protein [Herbaspirillum seropedicae]
Length=542
Score = 233 bits (594), Expect = 4e-75
Identities = 120/228 (53%), Positives = 161/228 (71%), Gaps = 2/228 (1%)
Query 45 IERLAPNDIPILIQGETGTGKELVARHIHHLSGRK-GPFLAVNCGAINDQLAESELFGHE 103
+ + AP+ +L++GE+GTGKE++AR IH+LS RK GPF+ VNC A+++ L ESELFGHE
Sbjct 217 VHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHE 276
Query 104 AGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQEREVTRVGARKAIPVD 163
G+FTGA G+RKG FE A GGTLFLDEIG++ Q KLLRVLQERE RVG ++I VD
Sbjct 277 KGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVD 336
Query 164 IRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGDILPLFQHFLQKYGEKI 223
+RLVTATN DLE+AV +FR DL +RIN+ + + PLRER+ DI L +HFL+K+ +
Sbjct 337 VRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVE- 395
Query 224 KKEANLILSPTVVTALYDYPWPGNIRELENIAHYAVLVAEGHLIKKEH 271
+ A + +SP + + + WPGN+RELEN + G LI + H
Sbjct 396 NQRAMVAMSPQAMKVMMNCYWPGNVRELENCVERTATMMRGDLITEVH 443
>P25852 Transcriptional regulatory protein ZraR [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=441
Score = 230 bits (586), Expect = 5e-75
Identities = 135/342 (39%), Positives = 192/342 (56%), Gaps = 29/342 (8%)
Query 18 GEQAQPLSIRAKALVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSG 77
G + S ++ P ++LL I +AP+D +LI G++GTGKELVAR +H S
Sbjct 128 GAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 187
Query 78 RKG-PFLAVNCGAINDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPL 136
R P + +NC A+N+ L ESELFGHE G+FTGA +R+G F ADGGTLFLDEIGD+
Sbjct 188 RSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247
Query 137 HLQVKLLRVLQEREVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQL 196
+QV+LLR +QEREV RVG+ + I VD+RL+ AT+ DL + V A +FRQDL +R+N+ +
Sbjct 248 LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAI 307
Query 197 ELKPLRERKGDILPLFQHFLQKYGEKIKKEANLILSPTVVTALYDYPWPGNIRELENIAH 256
E+ LR+R+ DI L HFL+++ E+ +K +P + L Y WPGNIRELEN
Sbjct 308 EMPSLRQRREDIPLLADHFLRRFAERNRKVVK-GFTPQAMDLLIHYDWPGNIRELENAIE 366
Query 257 YAVLVAEGHLIKKEHLKFNKLFQNFNIEQPTSETAKSWENPFDGIEYQLKRIFAAPTLPS 316
AV++ G I + L P + A + + G L +
Sbjct 367 RAVVLLTGEYISEREL-------------PLAIAATPIKTEYSGEIQPLVDV-------- 405
Query 317 NLWDRLEQLIIATSFEYCQRNQVQTSVLLGITRNVMRTYLKR 358
E+ +I + E N+ + + LGITR + L R
Sbjct 406 ------EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
>P71229 DNA-binding transcriptional activator HyfR [Escherichia
coli (strain K12)]
Length=670
Score = 235 bits (599), Expect = 1e-74
Identities = 123/237 (52%), Positives = 162/237 (68%), Gaps = 4/237 (2%)
Query 31 LVYHDPVSKNLLQLIERLAPNDIPILIQGETGTGKELVARHIHHLSGRKG-PFLAVNCGA 89
++Y ++LLQ ++ +A +D +LI GETGTGKE++AR IH LS R+ P + +NC A
Sbjct 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406
Query 90 INDQLAESELFGHEAGSFTGATGQRKGWFESADGGTLFLDEIGDLPLHLQVKLLRVLQER 149
I L ESELFGH+ G+FTGA +G FE ADGGTLFLDEIGDLPL LQ KLLRVLQER
Sbjct 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQER 466
Query 150 EVTRVGARKAIPVDIRLVTATNVDLEQAVQAEQFRQDLLFRINIAQLELKPLRERKGDIL 209
E+ R+G + IPV++R++ ATN DL Q V+ QFR DL +R+N+ LEL PLR+R DI
Sbjct 467 EIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526
Query 210 PLFQHFLQKYGEKIKKEANLILSPT-VVTALYDYPWPGNIRELENIAHYAVLVAEGH 265
L +HF QK + + + I PT + L + WPGN+RELEN+ AVL+ G+
Sbjct 527 LLAKHFTQKMARHMNRAIDAI--PTEALRQLMSWDWPGNVRELENVIERAVLLTRGN 581
Score = 18.9 bits (37), Expect = 3.7
Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 68 VARHIHHLSG 77
VAR IHH G
Sbjct 177 VAREIHHFFG 186
Lambda K H a alpha
0.322 0.139 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1637025
Database: f9fdbcc2b5bdb1a9d22d43c7128177bf.SwissProt.fasta
Posted date: Jun 2, 2024 4:58 PM
Number of letters in database: 5,625
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
