BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 691d58fdb040b95904c8eab01819a935.SwissProt.fasta
27 sequences; 1,838 total letters
Query= ACIAD1948
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
Q9S170 Cold shock-like protein CspG [Shewanella violacea (strain ... 94.7 1e-31
Q9KN00 Cold shock-like protein CspA [Vibrio cholerae serotype O1 ... 94.0 3e-31
Q9KL16 Cold shock protein CspV [Vibrio cholerae serotype O1 (stra... 92.4 1e-30
Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype ... 90.1 8e-30
Q9S1B7 Cold shock-like protein CspA [Shewanella violacea (strain ... 89.7 1e-29
P0DA49 Major cold shock protein [Streptococcus pyogenes serotype ... 89.0 2e-29
P0A361 Major cold shock protein [Streptococcus pyogenes serotype ... 89.0 2e-29
P0DA48 Major cold shock protein [Streptococcus pyogenes serotype ... 89.0 2e-29
P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype M1] 89.0 2e-29
P95459 Major cold shock protein CspA [Pseudomonas aeruginosa (str... 88.6 3e-29
P0A975 Cold shock-like protein CspE [Shigella flexneri] 87.8 7e-29
P0A973 Cold shock-like protein CspE [Escherichia coli O6:H1 (stra... 87.8 7e-29
P0A974 Cold shock-like protein CspE [Escherichia coli O157:H7] 87.8 7e-29
E0J1Q3 Cold shock-like protein CspE [Escherichia coli (strain ATC... 87.8 7e-29
P0A972 Cold shock-like protein CspE [Escherichia coli (strain K12)] 87.8 7e-29
Q89A90 Cold shock-like protein CspE [Buchnera aphidicola subsp. B... 85.9 4e-28
P63238 Cold shock-like protein CspE [Buchnera aphidicola subsp. S... 85.9 4e-28
P63237 Cold shock-like protein CspE [Buchnera aphidicola subsp. A... 85.9 4e-28
P57407 Cold shock-like protein CspC [Buchnera aphidicola subsp. A... 85.5 6e-28
E0J500 Cold shock-like protein CspC [Escherichia coli (strain ATC... 84.7 1e-27
P0A9Y6 Cold shock-like protein CspC [Escherichia coli (strain K12)] 84.7 1e-27
P62170 Cold shock-like protein CspC [Bacillus cereus] 84.0 2e-27
P51777 Cold shock protein CspD [Bacillus subtilis (strain 168)] 83.6 3e-27
Q45099 Cold shock-like protein CspD [Bacillus cereus] 83.6 3e-27
P72192 Temperature acclimation protein B [Pseudomonas fragi] 83.2 4e-27
P41016 Cold shock protein CspB [Bacillus caldolyticus] 82.8 6e-27
P0A106 Cold shock protein CapB [Pseudomonas fragi] 82.4 9e-27
>Q9S170 Cold shock-like protein CspG [Shewanella violacea (strain
JCM 10179 / CIP 106290 / LMG 19151 / DSS12)]
Length=70
Score = 94.7 bits (234), Expect = 1e-31
Identities = 46/70 (66%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSG-PDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQK 59
MSNS G VKWFNE KGFGFI QD+G DVF HF+ I S GFKTL EGQ+VSF + GQK
Sbjct 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQK 60
Query 60 GPSAVNIIAL 69
G A N++AL
Sbjct 61 GLQAANVVAL 70
>Q9KN00 Cold shock-like protein CspA [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=70
Score = 94.0 bits (232), Expect = 3e-31
Identities = 45/70 (64%), Positives = 51/70 (73%), Gaps = 1/70 (1%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSG-PDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQK 59
MS + G+VKWFNE KGFGFI QD+G DVF HFK I S GFKTL EGQRVSF + G+K
Sbjct 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKK 60
Query 60 GPSAVNIIAL 69
GP A + AL
Sbjct 61 GPQAAQVTAL 70
>Q9KL16 Cold shock protein CspV [Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961)]
Length=70
Score = 92.4 bits (228), Expect = 1e-30
Identities = 44/70 (63%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSGP-DVFAHFKEIASSGFKTLYEGQRVSFGIVDGQK 59
MS + G+VKWFNE KGFGF+ QD+G DVF HF I S GFKTL EGQRVSF + G+K
Sbjct 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKK 60
Query 60 GPSAVNIIAL 69
GP A N++AL
Sbjct 61 GPQASNVVAL 70
>Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394)]
Length=67
Score = 90.1 bits (222), Expect = 8e-30
Identities = 41/63 (65%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
GTVKWFN KGFGFI ++G DVFAHF I +SGFKTL EGQ+V+F + +GQ+GP AVNI
Sbjct 4 GTVKWFNAEKGFGFISTENGQDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQRGPQAVNI 63
Query 67 IAL 69
L
Sbjct 64 TKL 66
>Q9S1B7 Cold shock-like protein CspA [Shewanella violacea (strain
JCM 10179 / CIP 106290 / LMG 19151 / DSS12)]
Length=70
Score = 89.7 bits (221), Expect = 1e-29
Identities = 45/70 (64%), Positives = 53/70 (76%), Gaps = 1/70 (1%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSG-PDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQK 59
MS+S GTVKWFNE KGFGF+ QD+G DVF HF+ IAS GFKTL EGQ+V+F + G K
Sbjct 1 MSDSNTGTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPK 60
Query 60 GPSAVNIIAL 69
G A N+IAL
Sbjct 61 GLQASNVIAL 70
>P0DA49 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain SSI-1)]
Length=67
Score = 89.0 bits (219), Expect = 2e-29
Identities = 40/63 (63%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
GTVKWFN KGFGFI ++G DVFAHF I ++GFKTL EGQ+V+F + +GQ+GP AVNI
Sbjct 4 GTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNI 63
Query 67 IAL 69
L
Sbjct 64 TKL 66
>P0A361 Major cold shock protein [Streptococcus pyogenes serotype
M18 (strain MGAS8232)]
Length=67
Score = 89.0 bits (219), Expect = 2e-29
Identities = 40/63 (63%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
GTVKWFN KGFGFI ++G DVFAHF I ++GFKTL EGQ+V+F + +GQ+GP AVNI
Sbjct 4 GTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNI 63
Query 67 IAL 69
L
Sbjct 64 TKL 66
>P0DA48 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315)]
Length=67
Score = 89.0 bits (219), Expect = 2e-29
Identities = 40/63 (63%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
GTVKWFN KGFGFI ++G DVFAHF I ++GFKTL EGQ+V+F + +GQ+GP AVNI
Sbjct 4 GTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNI 63
Query 67 IAL 69
L
Sbjct 64 TKL 66
>P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype
M1]
Length=67
Score = 89.0 bits (219), Expect = 2e-29
Identities = 40/63 (63%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
GTVKWFN KGFGFI ++G DVFAHF I ++GFKTL EGQ+V+F + +GQ+GP AVNI
Sbjct 4 GTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRGPQAVNI 63
Query 67 IAL 69
L
Sbjct 64 TKL 66
>P95459 Major cold shock protein CspA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=69
Score = 88.6 bits (218), Expect = 3e-29
Identities = 40/63 (63%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG 60
MSN NGTVKWFN+ KGFGFI +SG D+F HF+ I +GFK+L EGQ+VSF +V+GQKG
Sbjct 1 MSNRQNGTVKWFNDAKGFGFITPESGNDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQKG 60
Query 61 PSA 63
A
Sbjct 61 LQA 63
>P0A975 Cold shock-like protein CspE [Shigella flexneri]
Length=69
Score = 87.8 bits (216), Expect = 7e-29
Identities = 42/68 (62%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I ++GFKTL EGQRV F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 61
Query 62 SAVNIIAL 69
SA N+IAL
Sbjct 62 SAANVIAL 69
>P0A973 Cold shock-like protein CspE [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=69
Score = 87.8 bits (216), Expect = 7e-29
Identities = 42/68 (62%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I ++GFKTL EGQRV F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 61
Query 62 SAVNIIAL 69
SA N+IAL
Sbjct 62 SAANVIAL 69
>P0A974 Cold shock-like protein CspE [Escherichia coli O157:H7]
Length=69
Score = 87.8 bits (216), Expect = 7e-29
Identities = 42/68 (62%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I ++GFKTL EGQRV F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 61
Query 62 SAVNIIAL 69
SA N+IAL
Sbjct 62 SAANVIAL 69
>E0J1Q3 Cold shock-like protein CspE [Escherichia coli (strain
ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 /
NCIMB 8666 / NRRL B-766 / W)]
Length=69
Score = 87.8 bits (216), Expect = 7e-29
Identities = 42/68 (62%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I ++GFKTL EGQRV F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 61
Query 62 SAVNIIAL 69
SA N+IAL
Sbjct 62 SAANVIAL 69
>P0A972 Cold shock-like protein CspE [Escherichia coli (strain
K12)]
Length=69
Score = 87.8 bits (216), Expect = 7e-29
Identities = 42/68 (62%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I ++GFKTL EGQRV F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 61
Query 62 SAVNIIAL 69
SA N+IAL
Sbjct 62 SAANVIAL 69
>Q89A90 Cold shock-like protein CspE [Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp)]
Length=69
Score = 85.9 bits (211), Expect = 4e-28
Identities = 41/68 (60%), Positives = 48/68 (71%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I S+GFKTL EGQ V F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKGP 61
Query 62 SAVNIIAL 69
SA N+I+L
Sbjct 62 SAANVISL 69
>P63238 Cold shock-like protein CspE [Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg)]
Length=69
Score = 85.9 bits (211), Expect = 4e-28
Identities = 41/68 (60%), Positives = 48/68 (71%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I S+GFKTL EGQ V F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 61
Query 62 SAVNIIAL 69
SA N+I+L
Sbjct 62 SAANVISL 69
>P63237 Cold shock-like protein CspE [Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS)]
Length=69
Score = 85.9 bits (211), Expect = 4e-28
Identities = 41/68 (60%), Positives = 48/68 (71%), Gaps = 1/68 (1%)
Query 3 NSVNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGP 61
+ + G VKWFNE KGFGFI +D DVF HF I S+GFKTL EGQ V F I +G KGP
Sbjct 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 61
Query 62 SAVNIIAL 69
SA N+I+L
Sbjct 62 SAANVISL 69
>P57407 Cold shock-like protein CspC [Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS)]
Length=69
Score = 85.5 bits (210), Expect = 6e-28
Identities = 41/66 (62%), Positives = 46/66 (70%), Gaps = 1/66 (2%)
Query 5 VNGTVKWFNEVKGFGFIQ-QDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSA 63
+ G VKWFNE KGFGFI D DVF HF I +GFKTL EGQ V F I DGQKGP+A
Sbjct 4 IKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQDGQKGPAA 63
Query 64 VNIIAL 69
VN+ +L
Sbjct 64 VNVFSL 69
>E0J500 Cold shock-like protein CspC [Escherichia coli (strain
ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 /
NCIMB 8666 / NRRL B-766 / W)]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 41/66 (62%), Positives = 46/66 (70%), Gaps = 1/66 (2%)
Query 5 VNGTVKWFNEVKGFGFIQQ-DSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSA 63
+ G VKWFNE KGFGFI D DVF HF I +GFKTL EGQ V F I DGQKGP+A
Sbjct 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAA 63
Query 64 VNIIAL 69
VN+ A+
Sbjct 64 VNVTAI 69
>P0A9Y6 Cold shock-like protein CspC [Escherichia coli (strain
K12)]
Length=69
Score = 84.7 bits (208), Expect = 1e-27
Identities = 41/66 (62%), Positives = 46/66 (70%), Gaps = 1/66 (2%)
Query 5 VNGTVKWFNEVKGFGFIQQ-DSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSA 63
+ G VKWFNE KGFGFI D DVF HF I +GFKTL EGQ V F I DGQKGP+A
Sbjct 4 IKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAA 63
Query 64 VNIIAL 69
VN+ A+
Sbjct 64 VNVTAI 69
>P62170 Cold shock-like protein CspC [Bacillus cereus]
Length=65
Score = 84.0 bits (206), Expect = 2e-27
Identities = 36/65 (55%), Positives = 46/65 (71%), Gaps = 0/65 (0%)
Query 5 VNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAV 64
+ G VKWFN KGFGFI+++ G DVF HF I G+K+L EGQ+V F IVDG +GP A
Sbjct 1 MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA 60
Query 65 NIIAL 69
N++ L
Sbjct 61 NVVKL 65
>P51777 Cold shock protein CspD [Bacillus subtilis (strain 168)]
Length=66
Score = 83.6 bits (205), Expect = 3e-27
Identities = 37/64 (58%), Positives = 45/64 (70%), Gaps = 0/64 (0%)
Query 6 NGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVN 65
NG VKWFN KGFGFI+ + G DVF HF I G+K+L EGQ VSF IV+G +GP A N
Sbjct 3 NGKVKWFNNEKGFGFIEVEGGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGNRGPQASN 62
Query 66 IIAL 69
++ L
Sbjct 63 VVKL 66
>Q45099 Cold shock-like protein CspD [Bacillus cereus]
Length=66
Score = 83.6 bits (205), Expect = 3e-27
Identities = 38/60 (63%), Positives = 42/60 (70%), Gaps = 0/60 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
G VKWFN KGFGFI+ + G DVF HF I GFKTL EGQ VSF IVDG +GP A N+
Sbjct 4 GKVKWFNGEKGFGFIEVEGGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVDGNRGPQAANV 63
>P72192 Temperature acclimation protein B [Pseudomonas fragi]
Length=63
Score = 83.2 bits (204), Expect = 4e-27
Identities = 38/63 (60%), Positives = 47/63 (75%), Gaps = 0/63 (0%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG 60
MS +GTVKWFN+ KGFGFI +SGPD+F HF+ I +GFK+L EGQ+V+F V GQKG
Sbjct 1 MSQRQSGTVKWFNDEKGFGFITPESGPDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG 60
Query 61 PSA 63
A
Sbjct 61 MQA 63
>P41016 Cold shock protein CspB [Bacillus caldolyticus]
Length=66
Score = 82.8 bits (203), Expect = 6e-27
Identities = 37/63 (59%), Positives = 43/63 (68%), Gaps = 0/63 (0%)
Query 7 GTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKGPSAVNI 66
G VKWFN KG+GFI+ + G DVF HF I GFKTL EGQ VSF IV G +GP A N+
Sbjct 4 GKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRGPQAANV 63
Query 67 IAL 69
+ L
Sbjct 64 VKL 66
>P0A106 Cold shock protein CapB [Pseudomonas fragi]
Length=69
Score = 82.4 bits (202), Expect = 9e-27
Identities = 40/66 (61%), Positives = 45/66 (68%), Gaps = 0/66 (0%)
Query 1 MSNSVNGTVKWFNEVKGFGFIQQDSGPDVFAHFKEIASSGFKTLYEGQRVSFGIVDGQKG 60
MSN GTVKWFN+ KGFGFI SG D+F HFK I S GFK+L EGQ+VSF GQKG
Sbjct 1 MSNRQTGTVKWFNDEKGFGFITPQSGDDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQKG 60
Query 61 PSAVNI 66
A +
Sbjct 61 MQAEEV 66
Lambda K H a alpha
0.326 0.142 0.434 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 54740
Database: 691d58fdb040b95904c8eab01819a935.SwissProt.fasta
Posted date: May 12, 2024 6:21 PM
Number of letters in database: 1,838
Number of sequences in database: 27
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
