BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 09f4d0b9d146731dc5acc33bcd6d0f81.SwissProt.fasta
1 sequences; 147 total letters
Query= ACIAD1951
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
P11469 Uncharacterized protein YsmA [Bacillus subtilis (strain 168)] 57.0 6e-16
>P11469 Uncharacterized protein YsmA [Bacillus subtilis (strain
168)]
Length=147
Score = 57.0 bits (136), Expect = 6e-16
Identities = 34/131 (26%), Positives = 67/131 (51%), Gaps = 2/131 (2%)
Query 13 RDQFSFFLKIQTRWADNDLYGHVNNVTYYSYFDTAANSFLIQHVGFDIHHSPIIGLVVDS 72
+ FSFF K+ R+++ D++GH+NNVT + YF+ S+ + + + + +V
Sbjct 15 KTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISY-FKKLNMMSENKQTMTVVASQ 73
Query 73 ACCFFQELSFPEIIEVGVAISKIGNSSLTYELAIFKEKHHQPSAQGHFVHVFVDRTTRKS 132
C + +++ E + + V S +G+SSLT + + +P G V V V + + K+
Sbjct 74 QCDYLRQVMPYEELRIYVKTSAVGSSSLTLHY-LGENLEGEPCFTGAVVMVQVSKESGKA 132
Query 133 TTIPENMREIL 143
+ + +E L
Sbjct 133 VSWTDEEKETL 143
Lambda K H a alpha
0.328 0.139 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 17423
Database: 09f4d0b9d146731dc5acc33bcd6d0f81.SwissProt.fasta
Posted date: May 10, 2024 2:23 AM
Number of letters in database: 147
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40