BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 152019a558f1df6a8e31c31951425df6.SwissProt.fasta
4 sequences; 2,061 total letters
Query= ACIAD1969
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
P76396 Uncharacterized protein YegL [Escherichia coli (strain K12)] 82.8 3e-23
Q55874 Uncharacterized protein sll0103 [Synechocystis sp. (strain... 48.1 2e-10
Q9ZQ46 E3 ubiquitin-protein ligase WAVH1 [Arabidopsis thaliana] 40.4 8e-08
F4JSV3 Probable E3 ubiquitin-protein ligase EDA40 [Arabidopsis th... 35.8 3e-06
>P76396 Uncharacterized protein YegL [Escherichia coli (strain
K12)]
Length=219
Score = 82.8 bits (203), Expect = 3e-23
Identities = 56/187 (30%), Positives = 89/187 (48%), Gaps = 7/187 (4%)
Query 3 RLPVYLLLDTSGSMHGEPIEAVKNGVQILLSTLRQDPYALETAYLSLISFDSQAKQLVPL 62
R P LLLD SGSM+G PI + G+ L DP AL+ L +++F + P
Sbjct 19 RCPCILLLDVSGSMNGRPINELNAGLVTFRDELLADPLALKRVELGIVTFGPVHVEQ-PF 77
Query 63 TELAVFQAPDLQVTGTTALGGALALLADKIEQEVAKTTVDVKGDWKPLIFIMTDGVPTDD 122
T A F P L G T +G A+ D +E+ + + ++P IF++TDG PTD+
Sbjct 78 TSAANFFPPILFAQGDTPMGAAITKALDMVEERKREYRANGISYYRPWIFLITDGAPTDE 137
Query 123 WRKGLQRL---QQVKTGVIVACAAGHGADTSILKQITEVVVELATADSNTIKAFFKWVSA 179
W+ ++ ++ K + GAD L QI+ V + + F W+S+
Sbjct 138 WQAAANKVFRGEEDKRFAFFSIGV-QGADMKTLAQIS--VRQPLPLQGLQFRELFSWLSS 194
Query 180 SISTGSQ 186
S+ + S+
Sbjct 195 SLRSVSR 201
>Q55874 Uncharacterized protein sll0103 [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=420
Score = 48.1 bits (113), Expect = 2e-10
Identities = 45/123 (37%), Positives = 66/123 (54%), Gaps = 21/123 (17%)
Query 2 RRLPVYL--LLDTSGSMHGEPIEAVKNGVQILLSTLRQDPYALETAYLSLISFDSQAKQL 59
RRLP+ L +LD SGSM G+P+E VK+ L+ L +D LS+I+FD +AK +
Sbjct 38 RRLPLNLCLVLDHSGSMDGQPLETVKSAALGLIDRLEEDD------RLSVIAFDHRAKIV 91
Query 60 VPLTEL----AVFQAPD-LQVTGTTALGGALALLADKIEQEVAKTTVDVKGDWKPLIFIM 114
+ ++ A+ +A + L+ G TA+ L L QE AK K D IF++
Sbjct 92 IENQQVRNGAAIAKAIERLKAEGGTAIDEGLKLGI----QEAAKG----KEDRVSHIFLL 143
Query 115 TDG 117
TDG
Sbjct 144 TDG 146
>Q9ZQ46 E3 ubiquitin-protein ligase WAVH1 [Arabidopsis thaliana]
Length=683
Score = 40.4 bits (93), Expect = 8e-08
Identities = 27/66 (41%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query 2 RRLPVYLL--LDTSGSMHGEPIEAVKNGVQILLSTLRQDPYALETAYLSLISFDSQAKQL 59
RR+PV L+ LD SG G +E +K ++I+LS LR E LS+I+F S +K+L
Sbjct 297 RRVPVDLVAVLDVSGRNSGGKLEMLKQTMRIVLSNLR------EMDRLSIIAFSSSSKRL 350
Query 60 VPLTEL 65
PL +
Sbjct 351 SPLRRM 356
>F4JSV3 Probable E3 ubiquitin-protein ligase EDA40 [Arabidopsis
thaliana]
Length=739
Score = 35.8 bits (81), Expect = 3e-06
Identities = 25/64 (39%), Positives = 37/64 (58%), Gaps = 8/64 (13%)
Query 2 RRLPVYLLLDTSGSMHGEPIEAVKNGVQILLSTLRQDPYALETAYLSLISFDSQAKQLVP 61
RR PV L+ T + G IE VK ++ ++S+LR ET LS++SF S +K+L P
Sbjct 352 RRSPVDLV--TVIDVSGGNIEMVKRAMRQVISSLR------ETDRLSMVSFSSSSKRLTP 403
Query 62 LTEL 65
L +
Sbjct 404 LRRM 407
Score = 15.4 bits (28), Expect = 8.6
Identities = 7/15 (47%), Positives = 9/15 (60%), Gaps = 1/15 (7%)
Query 119 PTDDWRKGLQRLQQV 133
PT WR +RL +V
Sbjct 705 PTSAWR-AAERLAKV 718
Lambda K H a alpha
0.319 0.135 0.388 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 336688
Database: 152019a558f1df6a8e31c31951425df6.SwissProt.fasta
Posted date: May 20, 2024 4:58 AM
Number of letters in database: 2,061
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
