BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: ac47a05d6f20ee5b389e2070bb1cdd30.SwissProt.fasta
5 sequences; 1,052 total letters
Query= ACIAD2040
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
P37148 UPF0716 protein FxsA [Serratia marcescens] 63.2 4e-17
P37147 UPF0716 protein FxsA [Escherichia coli (strain K12)] 55.8 3e-14
O32064 UPF0716 protein YtzA [Bacillus subtilis (strain 168)] 47.0 3e-11
Q29DV9 Mediator of RNA polymerase II transcription subunit 30 [Dr... 35.8 8e-07
Q6BWK4 Golgi to ER traffic protein 2 [Debaryomyces hansenii (stra... 33.9 3e-06
>P37148 UPF0716 protein FxsA [Serratia marcescens]
Length=139
Score = 63.2 bits (152), Expect = 4e-17
Identities = 43/144 (30%), Positives = 73/144 (51%), Gaps = 13/144 (9%)
Query 4 LLIVVFGAILEIAVWIGIAQFISGWYVFFWFIIAFFIGLSMLRSSTSSIMPQLQQMQMSG 63
LL++ A +EI+++I +A + + + +G+S++R+ Q+QQ +G
Sbjct 6 LLLIFLLAYIEISIFIKVAAVLGVAVTLLLVVFSSCVGISLVRNQGMKTFVQMQQKLAAG 65
Query 64 QMGNDPA--VTKKLAVAMAGFLLMLPGVVSDILALLILIPGVQTLFRNALMKTLAKRQQA 121
+ PA + K +++ +AGFLL++PG +D L LL+L+P VQ LM L+ +
Sbjct 66 E---SPAAEMVKSVSLVLAGFLLLIPGFFTDFLGLLLLLPPVQKSLTLKLMPHLSVYRP- 121
Query 122 MMNKMMGGMMGGD-VGGNAGQNPF 144
GG GGD GN F
Sbjct 122 ------GGWTGGDAANGNTFDGEF 139
>P37147 UPF0716 protein FxsA [Escherichia coli (strain K12)]
Length=158
Score = 55.8 bits (133), Expect = 3e-14
Identities = 45/177 (25%), Positives = 76/177 (43%), Gaps = 39/177 (22%)
Query 13 LEIAVWIGIAQFISGWYVFFWFIIAFFIGLSMLRSSTSSIMPQLQQMQMSGQMGNDPA-- 70
+EI+++I +A + I IG+S++R+ +QQ +G+ +PA
Sbjct 15 IEISIFIQVAHVLGVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQKMAAGE---NPAAE 71
Query 71 VTKKLAVAMAGFLLMLPGVVSDILALLILIPGVQTLFRNALMKTLAKRQQAMMNKMMGGM 130
+ K +++ +AG LL+LPG +D L LL+L+P VQ LM L ++M GG
Sbjct 72 MIKSVSLIIAGLLLLLPGFFTDFLGLLLLLPPVQKHLTVKLMPHL------RFSRMPGGG 125
Query 131 MGGDVGGNAGQNPFEDLMRQMQNMQNQQGASPYNDSNVIDGEAREVKPDQKQIEHKD 187
GG N DGE + ++ +++HKD
Sbjct 126 FSAGTGG----------------------------GNTFDGEYQRKDDERDRLDHKD 154
>O32064 UPF0716 protein YtzA [Bacillus subtilis (strain 168)]
Length=127
Score = 47.0 bits (110), Expect = 3e-11
Identities = 32/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (2%)
Query 4 LLIVVFGAILEIAVWIGIAQFISGWYVFFWFIIAFFIGLSMLRSSTSSIMPQLQQMQMSG 63
LL +VF AI EI +++ + I + I+ IG + + + + ++Q+ G
Sbjct 6 LLFIVFPAI-EIGIFLFLGNLIGILPTVLFMILTGIIGAAAAKKQGTEVYYKVQRDLQYG 64
Query 64 QMGNDPAVTKKLAVAMAGFLLMLPGVVSDILALLILIPGVQTLFRNALMKTL 115
+M + A+ L + + G LLMLPG +SD+ +LIP + + L K L
Sbjct 65 KMPGE-AIADGLCIFIGGLLLMLPGFLSDLAGACLLIPFTRGWCKPILFKWL 115
>Q29DV9 Mediator of RNA polymerase II transcription subunit 30
[Drosophila pseudoobscura pseudoobscura]
Length=325
Score = 35.8 bits (81), Expect = 8e-07
Identities = 32/110 (29%), Positives = 46/110 (42%), Gaps = 16/110 (15%)
Query 54 PQLQQMQMSGQMGNDPAVTKKLAVAMAGFLLMLPGVVSDILALLILIPGVQTLFRNALMK 113
PQ QQ Q M P G + M P V + + P Q + +M+
Sbjct 54 PQQQQQQQQMNMMGGP-----------GGMQMNPNAVGPTGLMPGMSPQHQMQQQQQMMQ 102
Query 114 TLAKR---QQAMMNKMMGGMMGGDVGGNAGQNPFEDLMRQMQ--NMQNQQ 158
+ QQAM +MMG G +GG++G + L +Q Q N+Q QQ
Sbjct 103 GVPMSMPPQQAMQQQMMGPQQGLGMGGSSGPQQQQQLQQQQQQSNLQQQQ 152
Score = 25.0 bits (53), Expect = 0.003
Identities = 17/57 (30%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query 114 TLAKRQQAMMNKMMGGMMGGDVGGNA--------GQNPFEDLMRQMQNMQNQQGASP 162
T ++QQ MMGG G + NA G +P + +Q Q MQ + P
Sbjct 53 TPQQQQQQQQMNMMGGPGGMQMNPNAVGPTGLMPGMSPQHQMQQQQQMMQGVPMSMP 109
Score = 20.4 bits (41), Expect = 0.090
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query 128 GGMMGGDVGGNAGQNPFEDLMRQMQNMQNQ 157
GGM GG G G P + Q Q Q Q
Sbjct 34 GGMQGGG-GMQHGNMPQMHMTPQQQQQQQQ 62
Score = 17.7 bits (34), Expect = 0.66
Identities = 12/39 (31%), Positives = 17/39 (44%), Gaps = 1/39 (3%)
Query 101 PGVQTLFRNALMKTLAKRQQAMMNKMMGGMMG-GDVGGN 138
P Q + ++ ++QQ N GG G G VG N
Sbjct 133 PQQQQQLQQQQQQSNLQQQQQQHNVGSGGAPGAGGVGNN 171
Score = 15.8 bits (29), Expect = 2.8
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query 133 GDVGGNAGQNPFEDLMRQMQNMQNQQGASPYNDSNVIDGEAREVKPDQKQ 182
G GG G + MQ QG N+ + P Q+Q
Sbjct 12 GPAGGGGGAPNMMPMGGFMQGGGGMQGGGGMQHGNM---PQMHMTPQQQQ 58
>Q6BWK4 Golgi to ER traffic protein 2 [Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083
/ IGC 2968)]
Length=303
Score = 33.9 bits (76), Expect = 3e-06
Identities = 15/41 (37%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
Query 117 KRQQAMMNKMMGGMMGGDVGGNAGQNPFEDLMRQMQNMQNQ 157
K + ++KM+ + G +VGGNA + +D M M NM Q
Sbjct 95 KVDEPNIDKMLSDIFGANVGGNATDSSQDDFMANMMNMMKQ 135
Lambda K H a alpha
0.327 0.139 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 141726
Database: ac47a05d6f20ee5b389e2070bb1cdd30.SwissProt.fasta
Posted date: Jun 2, 2024 8:11 AM
Number of letters in database: 1,052
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
