BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 47f9fb30f0f4e83745c9b69f5dcacdf3.SwissProt.fasta
20 sequences; 3,026 total letters
Query= ACIAD2053
Length=158
Score E
Sequences producing significant alignments: (Bits) Value
O07920 Transcriptional regulator AzlB [Bacillus subtilis (strain ... 70.9 1e-19
E1V7V9 Transcriptional regulatory protein DoeX [Halomonas elongat... 70.5 1e-19
P56901 Leucine-responsive regulatory protein [Rhizobium meliloti ... 65.5 1e-17
Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcu... 62.0 2e-16
P0ACJ6 DNA-binding transcriptional activator DecR [Escherichia co... 61.2 4e-16
P0ACJ7 DNA-binding transcriptional activator DecR [Escherichia co... 61.2 4e-16
P0ACJ5 DNA-binding transcriptional activator DecR [Escherichia co... 61.2 4e-16
O57880 Uncharacterized HTH-type transcriptional regulator PH0140 ... 58.9 3e-15
Q8U0P3 HTH-type transcriptional regulator FL11 [Pyrococcus furios... 58.5 4e-15
Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01... 58.5 5e-15
P44580 Uncharacterized HTH-type transcriptional regulator HI_0224... 58.5 6e-15
P0ACI9 Regulatory protein AsnC [Shigella flexneri] 57.4 1e-14
P0ACI7 Regulatory protein AsnC [Escherichia coli O6:H1 (strain CF... 57.4 1e-14
P0ACI8 Regulatory protein AsnC [Escherichia coli O157:H7] 57.4 1e-14
P0ACI6 Regulatory protein AsnC [Escherichia coli (strain K12)] 57.4 1e-14
O59188 HTH-type transcriptional regulator FL11 [Pyrococcus horiko... 54.7 1e-13
P42179 Bkd operon transcriptional regulator [Pseudomonas putida] 53.5 4e-13
P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furios... 51.6 1e-12
P50337 Uncharacterized HTH-type transcriptional regulator y4sM [S... 50.1 4e-12
P96652 HTH-type transcriptional regulator LrpA [Bacillus subtilis... 50.1 5e-12
>O07920 Transcriptional regulator AzlB [Bacillus subtilis (strain
168)]
Length=157
Score = 70.9 bits (172), Expect = 1e-19
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 4/141 (3%)
Query 4 LDRYDKQILEILTHEDLNLNEL--SERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKL 61
LD DK IL L ED +++ L S++I LS S+ R K+L+E+ I+ ++ KL
Sbjct 5 LDETDKAILRDL-QEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDEKKL 63
Query 62 GFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSD 121
G + L ++LS + ET FL ++ P+V + +TG S D++L++VA+DM++Y +
Sbjct 64 GIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTG-SHDYMLKIVAKDMESYRN 122
Query 122 ILLRRIGKIDNVVALHSSFVI 142
++ + + + + +S V+
Sbjct 123 FIIDSLMQNPAISGVDTSIVM 143
>E1V7V9 Transcriptional regulatory protein DoeX [Halomonas elongata
(strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198
/ 1H9)]
Length=158
Score = 70.5 bits (171), Expect = 1e-19
Identities = 41/123 (33%), Positives = 70/123 (57%), Gaps = 2/123 (2%)
Query 2 MELDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK 60
M+LDRYD +ILEIL+ + + ++L+E INLSVS R++ L ++ ++ +N
Sbjct 1 MKLDRYDLKILEILSRDGRITKSKLAEAINLSVSPCWERVRRLEKAGVIEGYGARLNTDV 60
Query 61 LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
L + +Q+ L H+ E+F +F A + D PEVT V G D++++ A +D Y
Sbjct 61 LVKRTPVWVQIELKAHNAESFARFEALVHDTPEVTECVAV-GGGVDYLVKFEATTIDTYQ 119
Query 121 DIL 123
++
Sbjct 120 RLI 122
>P56901 Leucine-responsive regulatory protein [Rhizobium meliloti
(strain 1021)]
Length=156
Score = 65.5 bits (158), Expect = 1e-17
Identities = 40/144 (28%), Positives = 73/144 (51%), Gaps = 2/144 (1%)
Query 2 MELDRYDKQILEILTHEDLNLN-ELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK 60
+ELD D +IL L + N EL+ER+ +S RR++ L E+ ++ + +N +
Sbjct 5 VELDAIDMKILRELQDDGRITNVELAERVGISAPPCLRRVRKLEEAGVIRGYRALLNASA 64
Query 61 LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
LG+ L V L F A P V A++V+G+S DF+L+ VA ++ ++
Sbjct 65 LGYDLVAFCMVGLKHQSDANLKAFAARTASWPLVREAWMVSGES-DFLLQCVAENLASFQ 123
Query 121 DILLRRIGKIDNVVALHSSFVIKE 144
D ++ + +NV + + I++
Sbjct 124 DFVIEELTATENVDTVRTMLTIRQ 147
>Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440)]
Length=140
Score = 62.0 bits (149), Expect = 2e-16
Identities = 42/145 (29%), Positives = 79/145 (54%), Gaps = 11/145 (8%)
Query 4 LDRYDKQILEILTHEDL-NLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D D +I+EIL + + +++ + S SS+ +R+K L E ++ I+ +K+G
Sbjct 1 MDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKIG 60
Query 63 FSLHILLQVSLSKHDTETFDKFL---AELEDIPEVTNAFLVTGQSADFILELVARDMDNY 119
+++ V+L+ DTE DKFL EL PEV F TG + E+ A+D +
Sbjct 61 YNV-----VALTGFDTEP-DKFLNVAKELCKFPEVKKVFTSTGDHM-IMTEIWAKDGKEF 113
Query 120 SDILLRRIGKIDNVVALHSSFVIKE 144
SD++ +IGKI+ + + + ++++
Sbjct 114 SDLIFNKIGKIEGIKKICPAIILEQ 138
>P0ACJ6 DNA-binding transcriptional activator DecR [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=152
Score = 61.2 bits (147), Expect = 4e-16
Identities = 33/142 (23%), Positives = 75/142 (53%), Gaps = 2/142 (1%)
Query 4 LDRYDKQILEILTHE-DLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD+ D+++L +L + L+L L+E +NL+ + +R+K L + I+ ++ K+G
Sbjct 2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIG 61
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
L + + H +E + +F+ + ++PEV + + G+ D+++ + DM Y +
Sbjct 62 LGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE-YDYLMRVQVADMKRYDEF 120
Query 123 LLRRIGKIDNVVALHSSFVIKE 144
R + + + + SSF +++
Sbjct 121 YKRLVNSVPGLSDVTSSFAMEQ 142
>P0ACJ7 DNA-binding transcriptional activator DecR [Escherichia
coli O157:H7]
Length=152
Score = 61.2 bits (147), Expect = 4e-16
Identities = 33/142 (23%), Positives = 75/142 (53%), Gaps = 2/142 (1%)
Query 4 LDRYDKQILEILTHE-DLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD+ D+++L +L + L+L L+E +NL+ + +R+K L + I+ ++ K+G
Sbjct 2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIG 61
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
L + + H +E + +F+ + ++PEV + + G+ D+++ + DM Y +
Sbjct 62 LGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE-YDYLMRVQVADMKRYDEF 120
Query 123 LLRRIGKIDNVVALHSSFVIKE 144
R + + + + SSF +++
Sbjct 121 YKRLVNSVPGLSDVTSSFAMEQ 142
>P0ACJ5 DNA-binding transcriptional activator DecR [Escherichia
coli (strain K12)]
Length=152
Score = 61.2 bits (147), Expect = 4e-16
Identities = 33/142 (23%), Positives = 75/142 (53%), Gaps = 2/142 (1%)
Query 4 LDRYDKQILEILTHE-DLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD+ D+++L +L + L+L L+E +NL+ + +R+K L + I+ ++ K+G
Sbjct 2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIG 61
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
L + + H +E + +F+ + ++PEV + + G+ D+++ + DM Y +
Sbjct 62 LGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE-YDYLMRVQVADMKRYDEF 120
Query 123 LLRRIGKIDNVVALHSSFVIKE 144
R + + + + SSF +++
Sbjct 121 YKRLVNSVPGLSDVTSSFAMEQ 142
>O57880 Uncharacterized HTH-type transcriptional regulator PH0140
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=158
Score = 58.9 bits (141), Expect = 3e-15
Identities = 36/141 (26%), Positives = 71/141 (50%), Gaps = 5/141 (4%)
Query 2 MELDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK 60
+ELD D+ IL +L + ++ +E+S RIN+ S+V R+ L++ ++ IN K
Sbjct 10 VELDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFK 69
Query 61 LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
G+ + + V + + + EL PEV +VTG + D +++ +D+
Sbjct 70 AGYEIVAFIAVDA---EPAKVKQVVEELAKFPEVDVLGIVTG-AHDIFMQVTVKDLQELE 125
Query 121 DILLRRIGKIDNVVALHSSFV 141
+L ++ KID + + +S +
Sbjct 126 RFILEKMAKIDGIKSTETSIL 146
Score = 16.5 bits (31), Expect = 3.2
Identities = 15/49 (31%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query 108 ILELVARD-MDNYSDILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLN 155
IL L+ D +YS+I RRI ++ V + ++KE + L+N
Sbjct 19 ILRLLQEDGRMSYSEIS-RRINVPESTVRARVNRLVKEGVIRKFAALIN 66
>Q8U0P3 HTH-type transcriptional regulator FL11 [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=151
Score = 58.5 bits (140), Expect = 4e-15
Identities = 40/143 (28%), Positives = 76/143 (53%), Gaps = 10/143 (7%)
Query 4 LDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD DK+I+EIL + + L E+S+ L+ S++H RIK L ES ++ +N LG
Sbjct 5 LDDIDKKIIEILQKDGKVPLREISKITGLAESTIHERIKRLRESGVIKKFTAVVNPEALG 64
Query 63 FSL--HILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
+++ IL++V K + + ++L PE+ + TG D ++++ ++ + +
Sbjct 65 YNILAFILIKVKAGK-----YSEVASKLVKYPEIVEVYETTG-DYDMVVKIRTKNSEELN 118
Query 121 DILLRRIGKIDNVVALHSSFVIK 143
+ L +G I+ V H+ V+K
Sbjct 119 N-FLDMVGSIEGVEGTHTMIVLK 140
>Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01370
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=158
Score = 58.5 bits (140), Expect = 5e-15
Identities = 36/141 (26%), Positives = 71/141 (50%), Gaps = 5/141 (4%)
Query 2 MELDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTK 60
++LD D+ IL +L + ++ +E+S RIN+ S+V R+ LI ++ IN K
Sbjct 10 VQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFK 69
Query 61 LGFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
G+ + + + + + + EL +PEV +VTG + D +++ RD+
Sbjct 70 AGYEIVAFIAIDA---EPAKVRQVVEELAKLPEVDVLGIVTG-AHDIFMQVTVRDLQELE 125
Query 121 DILLRRIGKIDNVVALHSSFV 141
+L ++ KID + + +S +
Sbjct 126 RFILEKMAKIDGIRSTETSIL 146
Score = 15.8 bits (29), Expect = 5.8
Identities = 15/49 (31%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query 108 ILELVARD-MDNYSDILLRRIGKIDNVVALHSSFVIKEYNVFNCYKLLN 155
IL L+ D +YS+I RRI ++ V + +I+E + L+N
Sbjct 19 ILRLLQEDGRMSYSEIS-RRINVPESTVRARVNRLIREGVIRKFAALIN 66
>P44580 Uncharacterized HTH-type transcriptional regulator HI_0224
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=168
Score = 58.5 bits (140), Expect = 6e-15
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query 4 LDRYDKQILEILTHEDL-NLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD+ D+ IL +L + + L ELSE++N SV++ RR++ L +S I++ ++ +G
Sbjct 19 LDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAVG 78
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
++ + + V + + ++F ++ EV + + ++G DF+L L A+DM++Y
Sbjct 79 RTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISG-DYDFMLLLHAKDMESYHAF 137
Query 123 LLRRIGKIDNVVALHSSFVI 142
R + +V S FV+
Sbjct 138 TRRVLTGEFHVRTYKSLFVM 157
>P0ACI9 Regulatory protein AsnC [Shigella flexneri]
Length=152
Score = 57.4 bits (137), Expect = 1e-14
Identities = 35/141 (25%), Positives = 77/141 (55%), Gaps = 4/141 (3%)
Query 4 LDRYDKQILEILT-HEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D D+ ILE L + EL+++ +S ++H R++ + ++ I++ + D++ +LG
Sbjct 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
+ + + + L + + LA+LE + EVT A+ TG + FI +++ R +D +
Sbjct 66 YDVGCFIGIILK--SAKDYPSALAKLESLDEVTEAYYTTGHYSIFI-KVMCRSIDALQHV 122
Query 123 LLRRIGKIDNVVALHSSFVIK 143
L+ +I ID + + + V++
Sbjct 123 LINKIQTIDEIQSTETLIVLQ 143
>P0ACI7 Regulatory protein AsnC [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=152
Score = 57.4 bits (137), Expect = 1e-14
Identities = 35/141 (25%), Positives = 77/141 (55%), Gaps = 4/141 (3%)
Query 4 LDRYDKQILEILT-HEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D D+ ILE L + EL+++ +S ++H R++ + ++ I++ + D++ +LG
Sbjct 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
+ + + + L + + LA+LE + EVT A+ TG + FI +++ R +D +
Sbjct 66 YDVGCFIGIILK--SAKDYPSALAKLESLDEVTEAYYTTGHYSIFI-KVMCRSIDALQHV 122
Query 123 LLRRIGKIDNVVALHSSFVIK 143
L+ +I ID + + + V++
Sbjct 123 LINKIQTIDEIQSTETLIVLQ 143
>P0ACI8 Regulatory protein AsnC [Escherichia coli O157:H7]
Length=152
Score = 57.4 bits (137), Expect = 1e-14
Identities = 35/141 (25%), Positives = 77/141 (55%), Gaps = 4/141 (3%)
Query 4 LDRYDKQILEILT-HEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D D+ ILE L + EL+++ +S ++H R++ + ++ I++ + D++ +LG
Sbjct 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
+ + + + L + + LA+LE + EVT A+ TG + FI +++ R +D +
Sbjct 66 YDVGCFIGIILK--SAKDYPSALAKLESLDEVTEAYYTTGHYSIFI-KVMCRSIDALQHV 122
Query 123 LLRRIGKIDNVVALHSSFVIK 143
L+ +I ID + + + V++
Sbjct 123 LINKIQTIDEIQSTETLIVLQ 143
>P0ACI6 Regulatory protein AsnC [Escherichia coli (strain K12)]
Length=152
Score = 57.4 bits (137), Expect = 1e-14
Identities = 35/141 (25%), Positives = 77/141 (55%), Gaps = 4/141 (3%)
Query 4 LDRYDKQILEILT-HEDLNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D D+ ILE L + EL+++ +S ++H R++ + ++ I++ + D++ +LG
Sbjct 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYSDI 122
+ + + + L + + LA+LE + EVT A+ TG + FI +++ R +D +
Sbjct 66 YDVGCFIGIILK--SAKDYPSALAKLESLDEVTEAYYTTGHYSIFI-KVMCRSIDALQHV 122
Query 123 LLRRIGKIDNVVALHSSFVIK 143
L+ +I ID + + + V++
Sbjct 123 LINKIQTIDEIQSTETLIVLQ 143
>O59188 HTH-type transcriptional regulator FL11 [Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3)]
Length=151
Score = 54.7 bits (130), Expect = 1e-13
Identities = 40/145 (28%), Positives = 75/145 (52%), Gaps = 10/145 (7%)
Query 4 LDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
LD DK+I++IL ++ L E+S+ L+ S++H RI+ L ES ++ I+ LG
Sbjct 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query 63 FSL--HILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
+S+ IL++V K + + + L PE+ + TG D ++++ ++ + +
Sbjct 65 YSMLAFILVKVKAGK-----YSEVASNLAKYPEIVEVYETTG-DYDMVVKIRTKNSEELN 118
Query 121 DILLRRIGKIDNVVALHSSFVIKEY 145
+ L IG I V H+ V+K +
Sbjct 119 N-FLDLIGSIPGVEGTHTMIVLKTH 142
>P42179 Bkd operon transcriptional regulator [Pseudomonas putida]
Length=161
Score = 53.5 bits (127), Expect = 4e-13
Identities = 39/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query 3 ELDRYDKQILEILTHEDLNLN-ELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKL 61
+LDR D IL L N EL+ +NLS + R++ + E ++ ++ L
Sbjct 3 KLDRTDIGILNSLQENARITNAELARSVNLSPTPCFNRVRAMEELGVIRQQVTLLSPEAL 62
Query 62 GFSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILELV---ARDMDN 118
G +++ + VSL K ++ +F E+ + PEV +L+TG D++L ++ + ++
Sbjct 63 GLDVNVFIHVSLEKQVEQSLHRFEEEIAERPEVMECYLMTG-DPDYLLRVLLPSIQALER 121
Query 119 YSDILLRRIGKIDNVVALHSSFVIKE 144
+ D L R + V + SSF +K+
Sbjct 122 FLDYLTR----LPGVANIRSSFALKQ 143
>P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=141
Score = 51.6 bits (122), Expect = 1e-12
Identities = 39/144 (27%), Positives = 78/144 (54%), Gaps = 9/144 (6%)
Query 4 LDRYDKQILEILTHEDLN-LNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D DK ILEIL + E+++++ +S ++V +R+K L E I+ IN KLG
Sbjct 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query 63 FSLHILLQVSLSKHDT--ETFDKFLAELEDIPEVTNAFLVTGQSADFILELVARDMDNYS 120
+SL V+++ DT E + +L++ V +L +G + + A+D ++ +
Sbjct 62 YSL-----VTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHM-IMAVIWAKDGEDLA 115
Query 121 DILLRRIGKIDNVVALHSSFVIKE 144
+I+ +IGKI+ V + + ++++
Sbjct 116 EIISNKIGKIEGVTKVCPAIILEK 139
>P50337 Uncharacterized HTH-type transcriptional regulator y4sM
[Sinorhizobium fredii (strain NBRC 101917 / NGR234)]
Length=127
Score = 50.1 bits (118), Expect = 4e-12
Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 1/115 (1%)
Query 29 INLSVSSVHRRIKHLIESNIMSHLKRDINFTKLGFSLHILLQVSLSKHDTETFDKFLAEL 88
+ LS S+ RRIK + ++ ++ ++ T+ ++ +++ ++L + E DKF A +
Sbjct 3 VGLSPSACLRRIKLMEQAGVIRGYTALVDPTQSESTIAVIINITLERQTEEYLDKFEAAV 62
Query 89 EDIPEVTNAFLVTGQSADFILELVARDMDNYSDILLRRIGKIDNVVALHSSFVIK 143
PE+ +L+TG S D++L + + + I + + V+ +HSSF I+
Sbjct 63 RKHPEIRECYLMTGGS-DYMLRVDVENAGAFERIHKEVLSTLPGVLRIHSSFSIR 116
>P96652 HTH-type transcriptional regulator LrpA [Bacillus subtilis
(strain 168)]
Length=136
Score = 50.1 bits (118), Expect = 5e-12
Identities = 30/108 (28%), Positives = 59/108 (55%), Gaps = 4/108 (4%)
Query 4 LDRYDKQILEILTHED-LNLNELSERINLSVSSVHRRIKHLIESNIMSHLKRDINFTKLG 62
+D DK+IL+ L+ L + +L E+++L+ + R+ LI++ I+ ++N KLG
Sbjct 2 IDEIDKKILDELSKNSRLTMKKLGEKVHLTAPATASRVVKLIDNGIIKGCSIEVNQVKLG 61
Query 63 FSLHILLQVSLSKHDTETFDKFLAELEDIPEVTNAFLVTGQSADFILE 110
FS+H L + + K + + F+ ++ V N + V+G ++LE
Sbjct 62 FSIHAFLNIYIEKIHHQPYLAFIETQDNY--VINNYKVSGDGC-YLLE 106
Lambda K H a alpha
0.326 0.141 0.392 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 281332
Database: 47f9fb30f0f4e83745c9b69f5dcacdf3.SwissProt.fasta
Posted date: Jun 1, 2024 10:03 PM
Number of letters in database: 3,026
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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