BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 08f47a2ee6b3c3b8cac0b203812aea13.SwissProt.fasta
11 sequences; 3,226 total letters
Query= ACIAD2061
Length=298
Score E
Sequences producing significant alignments: (Bits) Value
Q9I402 L-glutamate/L-aspartate-binding protein [Pseudomonas aerug... 243 3e-83
P37902 Glutamate/aspartate import solute-binding protein [Escheri... 228 2e-77
Q9ZF60 Glutamate/aspartate import solute-binding protein [Salmone... 225 4e-76
O34563 ABC transporter glutamine-binding protein GlnH [Bacillus s... 118 5e-35
P27676 Glutamine-binding protein [Geobacillus stearothermophilus] 101 6e-29
P58068 Putative amino-acid ABC transporter-binding protein YhdW [... 81.3 4e-21
P45766 Putative amino-acid ABC transporter-binding protein YhdW [... 81.3 4e-21
P54952 Probable amino-acid-binding protein YxeM [Bacillus subtili... 73.9 7e-19
P54535 Arginine-binding extracellular protein ArtP [Bacillus subt... 73.6 9e-19
Q52812 General L-amino acid-binding periplasmic protein AapJ [Rhi... 66.6 5e-16
P30860 ABC transporter arginine-binding protein 1 [Escherichia co... 49.3 2e-10
>Q9I402 L-glutamate/L-aspartate-binding protein [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=302
Score = 243 bits (621), Expect = 3e-83
Identities = 126/294 (43%), Positives = 178/294 (61%), Gaps = 3/294 (1%)
Query 5 ATSLLVSAFMICTVGGATQV-QAADTLAKIKSSGKIIIGHRESSDPISYVVA--GKPVGY 61
A SLL +A + + + TL KIK +G I +GHR++S P SY+ GKP+GY
Sbjct 4 APSLLSTAIVAALLSAPVVADELTGTLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGY 63
Query 62 AVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQVG 121
+ D+ +KKEL +P LKV Y VTS TRIP + +G +D+ECG+TTN+++RQ+QV
Sbjct 64 SHDLQLKVVEAVKKELNLPELKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVD 123
Query 122 FSTNYYATEVRMAVKANSGIKSLADLNGKAVVTTQGTTSDKYIKMNEKGQSINVQNIYGK 181
FS + R+ K + IK DL GK VVTT GTTS++ +K + + + I K
Sbjct 124 FSVGIFEVGTRLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAK 183
Query 182 DHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKDDPKF 241
DH +SF M+ SGRA AF+MDD +L G +AK+ P ++ + G S E YG M+ K D F
Sbjct 184 DHGESFMMLESGRAVAFMMDDALLYGEMAKAKKPDDWVVGGTPQSFEIYGCMVRKGDAAF 243
Query 242 KALADRTVTGMWKTGQMDKLYKKWFQSAIPPKNTNLNMAQSASFKKLKAHPTDE 295
K + D+ +T + +G+++K+Y KWF IPPK NLN S KKL A PTD+
Sbjct 244 KKVVDKAITDTYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTDK 297
>P37902 Glutamate/aspartate import solute-binding protein [Escherichia
coli (strain K12)]
Length=302
Score = 228 bits (582), Expect = 2e-77
Identities = 120/273 (44%), Positives = 162/273 (59%), Gaps = 1/273 (0%)
Query 26 AADTLAKIKSSGKIIIGHRESSDPISYVV-AGKPVGYAVDICNNFANDIKKELKMPNLKV 84
A TL KI +G I++GHRESS P SY K VGY+ D N +KK+L P+L+V
Sbjct 29 AGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQV 88
Query 85 EYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVKANSGIKSL 144
+ +TS RIP L +G D ECG+TTN+ +RQ+Q FS + R+ K IK
Sbjct 89 KLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDF 148
Query 145 ADLNGKAVVTTQGTTSDKYIKMNEKGQSINVQNIYGKDHADSFAMMASGRAAAFVMDDNI 204
A+L KAVV T GTTS+ + + Q +N++ I KDH DSF + SGRA AF+MDD +
Sbjct 149 ANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDAL 208
Query 205 LAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKDDPKFKALADRTVTGMWKTGQMDKLYKK 264
LAG AK+ P + IVG S E YG M+ KDDP+FK L D T+ + +G+ +K + K
Sbjct 209 LAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDK 268
Query 265 WFQSAIPPKNTNLNMAQSASFKKLKAHPTDEGI 297
WF++ IPPKN N+N S K L P D+ +
Sbjct 269 WFKNPIPPKNLNMNFELSDEMKALFKEPNDKAL 301
>Q9ZF60 Glutamate/aspartate import solute-binding protein [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=302
Score = 225 bits (573), Expect = 4e-76
Identities = 122/274 (45%), Positives = 164/274 (60%), Gaps = 3/274 (1%)
Query 26 AADTLAKIKSSGKIIIGHRESSDPISYVV-AGKPVGYAVDICNNFANDIKKELKMPNLKV 84
A TL KI +G I++GHRESS P SY K VGY+ D N +KK+L P+L+V
Sbjct 29 AGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQV 88
Query 85 EYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVKANSGIKSL 144
+ +TS RIP L +G D ECG+TTN+ +RQ+Q FS + R+ K IK
Sbjct 89 KLIPITSQNRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGDIKDF 148
Query 145 ADLNGKAVVTTQGTTSDKYI-KMNEKGQSINVQNIYGKDHADSFAMMASGRAAAFVMDDN 203
DL GKAVV T GTTS+ + K+NE+ Q + ++ I KDH DSF + SGRA AF+MDD
Sbjct 149 PDLKGKAVVVTSGTTSEILLHKLNEE-QKMGMRIISAKDHGDSFRTLESGRAVAFMMDDA 207
Query 204 ILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKDDPKFKALADRTVTGMWKTGQMDKLYK 263
+LAG AK+ P + IVG S E YG M+ K+DP+FK L D T+ +G+ +K +
Sbjct 208 LLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKNDPEFKKLMDDTIAQAQTSGEAEKWFD 267
Query 264 KWFQSAIPPKNTNLNMAQSASFKKLKAHPTDEGI 297
KWF++ IPPKN N+N S K L P D+ +
Sbjct 268 KWFKNPIPPKNLNMNFELSDEMKALFKAPNDKAL 301
>O34563 ABC transporter glutamine-binding protein GlnH [Bacillus
subtilis (strain 168)]
Length=273
Score = 118 bits (295), Expect = 5e-35
Identities = 79/252 (31%), Positives = 133/252 (53%), Gaps = 14/252 (6%)
Query 19 GGATQVQAADTLAKIKSSGKIIIGHRESSD--PISYVVAGKPVGYAVDICNNFANDIKKE 76
G A++ DTLA IK + KI+ G + + + +G+ G+ +DI A DI +
Sbjct 28 GEASKESKKDTLAAIKDNDKIVFGVKTDTRLFGLKNPSSGEIEGFDIDIAKQIAKDILGD 87
Query 77 LKMPNLKVEYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVK 136
K K ++K VTS TRIP L +G+ID T T +++R+++V FS Y+ + VK
Sbjct 88 EK----KAQFKEVTSKTRIPMLQNGDIDAIVATMTITEERKKEVDFSDVYFEAGQSLLVK 143
Query 137 ANSGIKSLADL-NGKAVVTTQGTTSDKYIKMNEKGQSINVQNIYGKDHADSFAMMASGRA 195
S IKS+ +L G V+ +G+TS + I+ EK +V +++A++F + SG+
Sbjct 144 KGSKIKSVENLGKGSKVLAVKGSTSSQNIR--EKAPEASVLEF--ENYAEAFTALKSGQG 199
Query 196 AAFVMDDNILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKDDPKFKALADRTVTGMWKT 255
A D+ IL G+ ++ N + + G + EPYGI + K + ++ M
Sbjct 200 DALTTDNAILYGMADENKN---YQLTGKPFTDEPYGIAVKKGQSALAKEINASLKKMKSD 256
Query 256 GQMDKLYKKWFQ 267
G+ D++YKKW +
Sbjct 257 GRYDEIYKKWIK 268
>P27676 Glutamine-binding protein [Geobacillus stearothermophilus]
Length=262
Score = 101 bits (252), Expect = 6e-29
Identities = 73/217 (34%), Positives = 117/217 (54%), Gaps = 14/217 (6%)
Query 28 DTLAKIKSSGKIIIGHRESSD--PISYVVAGKPVGYAVDICNNFANDIKKELKMPNLKVE 85
+TL KIK GK+I+G + + + GK G+ +DI A KK L N K+E
Sbjct 50 NTLEKIKKRGKLIVGVKYDLNLFGLKNPETGKVEGFDIDIAKGLA---KKILGDEN-KIE 105
Query 86 YKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVKANSGIKSLA 145
K VTS TRIP L +G ID GT T +++R+++V FS Y+ + VK +S I S+
Sbjct 106 LKEVTSKTRIPMLNNGEIDAIIGTMTITEERKKEVDFSDVYFMAGQSLLVKKDSKINSVK 165
Query 146 DL-NGKAVVTTQGTTSDKYIKMNEKGQSINVQNIYGKDHADSFAMMASGRAAAFVMDDNI 204
DL G V+T +G+TS + I+ + +NV +++A++F + +G+ A D+ +
Sbjct 166 DLKKGMTVLTAKGSTSAQNIR--KVAPEVNVLEF--ENYAEAFTALKAGQGDALTTDNAL 221
Query 205 LAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKDDPKF 241
L G+ + N + ++ S EPYGI AK+ +
Sbjct 222 LWGMAKQDPN---YRVLDETFSKEPYGIGSAKETKNY 255
>P58068 Putative amino-acid ABC transporter-binding protein YhdW
[Escherichia coli O157:H7]
Length=341
Score = 81.3 bits (199), Expect = 4e-21
Identities = 67/261 (26%), Positives = 114/261 (44%), Gaps = 9/261 (3%)
Query 1 MKHSATSLLVSAFMICTVGGATQVQAADTLAKIKSSGKIIIGHRESSDPISYVVA-GKPV 59
MK + L +A ++ V A Q A TL ++ G + G + SY A GK
Sbjct 1 MKKMMIATLAAASVLLAV--ANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFS 58
Query 60 GYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQ 119
G VD+C A + + + KV+Y +T+ R L SG +D+ TT + R
Sbjct 59 GIDVDVCRGVAAAVFGD----DTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAG 114
Query 120 VG--FSTNYYATEVRMAVKANSGIKSLADLNGKAVVTTQGTTSDKYIKMNEKGQSINVQN 177
+G F+ Y + +G+KS +L+G V GT ++ + K ++
Sbjct 115 MGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTP 174
Query 178 IYGKDHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKD 237
+ +S + SGR D + L L K SNP E+ ++ V+S EP G ++ +
Sbjct 175 VTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRG 234
Query 238 DPKFKALADRTVTGMWKTGQM 258
D ++ ++ T+ M +M
Sbjct 235 DDEWFSIVRWTLFAMLNAEEM 255
>P45766 Putative amino-acid ABC transporter-binding protein YhdW
[Escherichia coli (strain K12)]
Length=341
Score = 81.3 bits (199), Expect = 4e-21
Identities = 68/261 (26%), Positives = 114/261 (44%), Gaps = 9/261 (3%)
Query 1 MKHSATSLLVSAFMICTVGGATQVQAADTLAKIKSSGKIIIGHRESSDPISYVVA-GKPV 59
MK + L +A ++ V A Q A TL ++ G + G + SY A GK
Sbjct 1 MKKMMIATLAAASVLLAV--ANQAXAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFS 58
Query 60 GYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQ 119
G VDIC A + + + KV+Y +T+ R L SG +D+ TT + R
Sbjct 59 GIDVDICRGVAAAVFGD----DTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAG 114
Query 120 VG--FSTNYYATEVRMAVKANSGIKSLADLNGKAVVTTQGTTSDKYIKMNEKGQSINVQN 177
+G F+ Y + +G+KS +L+G V GT ++ + K ++
Sbjct 115 MGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTP 174
Query 178 IYGKDHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAKD 237
+ +S + SGR D + L L K SNP E+ ++ V+S EP G ++ +
Sbjct 175 VTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRG 234
Query 238 DPKFKALADRTVTGMWKTGQM 258
D ++ ++ T+ M +M
Sbjct 235 DDEWFSIVRWTLFAMLNAEEM 255
>P54952 Probable amino-acid-binding protein YxeM [Bacillus subtilis
(strain 168)]
Length=264
Score = 73.9 bits (180), Expect = 7e-19
Identities = 60/233 (26%), Positives = 105/233 (45%), Gaps = 14/233 (6%)
Query 41 IGHRESSDPISYVVAGKPVGYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPELLS 100
+G S P +Y GK G+ V++ A I ++K+++K + S + EL +
Sbjct 37 VGATGQSYPFAYKENGKLTGFDVEVMEAVAKKI-------DMKLDWKLLEFSGLMGELQT 89
Query 101 GNIDMECGTTTNSKQRQQQVGFSTNY-YATEVRMAVKANSGIKSLADLNGKAVVTTQGTT 159
G +D + +R++ F+ Y YA + K N+ IKS+ DL GK V G+
Sbjct 90 GKLDTISNQVAVTDERKETYNFTKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSN 149
Query 160 SDKYIKMNEKGQSINVQNIYGKDHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPKEFA 219
K ++ + + IN++ + + +A GR A+V +L I K+ P + A
Sbjct 150 HAKNLESKDPDKKINIKTY--ETQEGTLKDVAYGRVDAYVNSRTVLIAQIKKTGLPLKLA 207
Query 220 IVGPVLSSEPYGIMIAKDD--PKFKALADRTVTGMWKTGQMDKLYKKWFQSAI 270
G + E AKDD K + ++ + + K G + KL +K+F I
Sbjct 208 --GDPIVYEQVAFPFAKDDAHDKLRKKVNKALDELRKDGTLKKLSEKYFNEDI 258
>P54535 Arginine-binding extracellular protein ArtP [Bacillus
subtilis (strain 168)]
Length=255
Score = 73.6 bits (179), Expect = 9e-19
Identities = 60/234 (26%), Positives = 106/234 (45%), Gaps = 20/234 (9%)
Query 38 KIIIGHRESSDPISYVVAGKPVGYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPE 97
K+I+G P Y VG+ V++ A K ++E + + ++ I
Sbjct 33 KLIMGTSADYKPFEYKEGDNIVGFDVELAKALA-------KKAGYEIEVQDMDFNSLITA 85
Query 98 LLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVKANSGIKSLADLNGKAVVTTQG 157
L S +D+ T + +R++QV FS YY + K +SGI+SL DL GK V G
Sbjct 86 LKSKQVDLVLSGMTPTPERKKQVDFSDVYYTANHMIVSKKDSGIQSLKDLKGKTVGVQLG 145
Query 158 TTSDKYIKMNEKGQSINVQNIYGKDH----ADSFAMMASGRAAAFVMDDNILAGLIAKSS 213
+ + EKG+ ++ + + + +D + S R A +++D + G +
Sbjct 146 SIQE------EKGKELSPEYGFKTEDRNRISDLVQEIKSDRFDAAIIEDIVAEGYFKSND 199
Query 214 NPKEFAIVGPVLSSEPYGIMIA-KDDPKFKALADRTVTGMWKTGQMDKLYKKWF 266
+ + F I P +E G IA + D + ++ + M G+++KL KKWF
Sbjct 200 DLQGFVI--PDAKAEEAGSAIAFRKDSELTDKFNKALKEMEDNGELEKLKKKWF 251
>Q52812 General L-amino acid-binding periplasmic protein AapJ
[Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)]
Length=341
Score = 66.6 bits (161), Expect = 5e-16
Identities = 60/245 (24%), Positives = 105/245 (43%), Gaps = 12/245 (5%)
Query 1 MKHSATSLLVSAFMICTVGGATQVQAADTLAKIKSSGKIIIGHRESSDPISYVVA-GKPV 59
MK+ S + A ++ A +A TL+ +K+ G + G + A G
Sbjct 1 MKNKLLSAAIGAAVLAVGASAA---SATTLSDVKAKGFVQCGVNTGLTGFAAPDASGNWA 57
Query 60 GYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIPELLSGNIDMECGTTTNSKQRQQQ 119
G+ VD C A+ + + KV+Y + R L SG ID+ TT + R
Sbjct 58 GFDVDFCKAVASAVFGD----PTKVKYTPTNAKERFTALQSGEIDVLSRNTTWTINRDTA 113
Query 120 VGFS---TNYYATEVRMAVKANSGIKSLADLNGKAVVTTQGTTSDKYIKMNEKGQSINVQ 176
+GF+ YY + M V+ +KS +L+G A+ GTT++ + K ++
Sbjct 114 LGFNFRPVTYYDGQGFM-VRKGLNVKSALELSGAAICVQSGTTTELNLADYFKTNNLQYN 172
Query 177 NIYGKDHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPKEFAIVGPVLSSEPYGIMIAK 236
+ ++ + A +GR + D + L L NP E I+ ++S EP G + +
Sbjct 173 PVVFENLPEVNAAYDAGRCDVYTTDQSGLYSLRLTLKNPDEHIILPEIISKEPLGPAVRQ 232
Query 237 DDPKF 241
D ++
Sbjct 233 GDDQW 237
>P30860 ABC transporter arginine-binding protein 1 [Escherichia
coli (strain K12)]
Length=243
Score = 49.3 bits (116), Expect = 2e-10
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 19/234 (8%)
Query 38 KIIIGHRESSDPISYVVAGKP-VGYAVDICNNFANDIKKELKMPNLKVEYKAVTSSTRIP 96
KI G + P + A VG+ +D+ ++ E N + + IP
Sbjct 22 KINFGVSATYPPFESIGANNEIVGFDIDLAKALCKQMQAECTFTNHAFD-------SLIP 74
Query 97 ELLSGNIDMECGTTTNSKQRQQQVGFSTNYYATEVRMAVKANSGIKSLADLNGKAVVTTQ 156
L D + +R +QV F+T YY + K ++ K+ ADL GK +
Sbjct 75 SLKFRKYDAVISGMDITPERSKQVSFTTPYYENSAVVIAKKDT-YKTFADLKGKRIGMEN 133
Query 157 GTTSDKYIKMNEKGQSINVQNIYGKDHADSFAMMASGRAAAFVMDDNILAGLIAKSSNPK 216
GTT KYI + Q V+ + + ++F + +GR D ++ + +NP+
Sbjct 134 GTTHQKYI----QDQHPEVKTVSYDSYQNAFIDLKNGRIDGVFGDTAVVNEWL--KTNPQ 187
Query 217 ----EFAIVGPVLSSEPYGIMIAKDDPKFKALADRTVTGMWKTGQMDKLYKKWF 266
+ P GI + D+ + + + G K+ +WF
Sbjct 188 LGVATEKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQWF 241
Lambda K H a alpha
0.316 0.129 0.364 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 702015
Database: 08f47a2ee6b3c3b8cac0b203812aea13.SwissProt.fasta
Posted date: May 20, 2024 7:23 PM
Number of letters in database: 3,226
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40