BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e5102588de87feffc0922666c26ccc31.SwissProt.fasta
24 sequences; 5,684 total letters
Query= ACIAD2090
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
A0A0H2ZF87 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransfer... 235 9e-81
Q7N222 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Phot... 196 1e-65
A8AD50 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citr... 196 1e-65
A6TCF3 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Kleb... 196 2e-65
A7MGX5 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cron... 196 2e-65
Q57LG7 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salm... 195 2e-65
Q6D257 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pect... 194 4e-65
P66974 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salm... 194 6e-65
P66975 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salm... 194 6e-65
Q5PNG3 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salm... 194 6e-65
Q8XA83 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Esch... 190 3e-63
Q3YZ20 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shig... 190 3e-63
Q32D32 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shig... 190 3e-63
A1AE69 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Esch... 190 3e-63
P0AE03 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shig... 190 3e-63
Q0T1Y7 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shig... 190 3e-63
Q31XV8 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shig... 190 3e-63
P0AE01 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Esch... 190 3e-63
P37005 Uncharacterized tRNA/rRNA methyltransferase LasT [Escheric... 104 3e-30
Q4JB16 tRNA (cytidine-2'-O-)-methyltransferase TrmJ [Sulfolobus a... 79.3 7e-21
P37006 Uncharacterized tRNA/rRNA methyltransferase LasT [Serratia... 73.9 3e-19
Q5SM16 tRNA (guanosine(18)-2'-O)-methyltransferase [Thermus therm... 41.2 9e-08
Q72GI1 tRNA (guanosine(18)-2'-O)-methyltransferase [Thermus therm... 41.2 9e-08
P0AGJ2 tRNA (guanosine(18)-2'-O)-methyltransferase [Escherichia c... 36.6 4e-06
>A0A0H2ZF87 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase
TrmJ [Pseudomonas aeruginosa (strain UCBPP-PA14)]
Length=257
Score = 235 bits (599), Expect = 9e-81
Identities = 123/256 (48%), Positives = 171/256 (67%), Gaps = 8/256 (3%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L +R+V+VNT+ P NIG A RAMK MGLSQLVLV P+++PH D A A+GA D+++ +
Sbjct 2 LDRIRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARASGATDILDAAR 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
+VDTLE+A+ C +V GTSAR R IPWPLLD R A ++ + E+A+VFGRE G
Sbjct 62 VVDTLEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEH-LEANGEVALVFGREYAG 120
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +H+ IP + ++G LN+A A+QV+ YE+RMA LA A KM+
Sbjct 121 LTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLA------AQGKPTKMEKF 174
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E M + LV ++E +Y HLE+ L+DI FLDP+ PR L RLRRL+GR+ + ++E
Sbjct 175 ESTSM-LNTELVTADELELYYAHLERTLIDIGFLDPEKPRHLMSRLRRLYGRSAISKLEM 233
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + Q ++ G
Sbjct 234 NILRGILTETQKVARG 249
>Q7N222 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
laumondii subsp. laumondii (strain DSM 15139 /
CIP 105565 / TT01)]
Length=241
Score = 196 bits (498), Expect = 1e-65
Identities = 115/260 (44%), Positives = 158/260 (61%), Gaps = 21/260 (8%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RI++V T+ N+GS RAMKTMGL+ L LV P P AL+AGA D++
Sbjct 2 LENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQPDSHAIALSAGASDVIGHAT 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVD+L++A+ C +V GTSARSRT+ WP+++ R E S+ +AIVFGRE G
Sbjct 62 IVDSLDKALAGCGLVIGTSARSRTLSWPMVEPRECGERSVQQ--AEHASVAIVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YHL IP N +YG LN+A A+Q++ YE+RMA LA+ + Q T
Sbjct 120 LTNEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKTE--------QKT 171
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
+++E PL + ME FY HLE +L D F+ +P + RLRRLF RA+ + E
Sbjct 172 DEVEY----PLAD--DMERFYHHLECVLNDSGFIRKAHPGQIMNRLRRLFTRARPEMQEL 225
Query 241 HLLRGIFSRVQALSHGKWKK 260
++LRGI S V+ KW K
Sbjct 226 NILRGILSSVE-----KWAK 240
>A8AD50 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)]
Length=243
Score = 196 bits (498), Expect = 1e-65
Identities = 111/257 (43%), Positives = 156/257 (61%), Gaps = 15/257 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL+ A+ C +V GTSARSRT+PWP+LD R S+ + +A+VFGRE G
Sbjct 62 IVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAV--NTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA +ND+ + +
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEET---- 175
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 176 -------PYPLVD--DLERFYGHLEQTLLSTGFIREGHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHGK 257
++LRGI + ++ + GK
Sbjct 227 NILRGILASIEQQNKGK 243
>A6TCF3 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721
/ MGH 78578)]
Length=244
Score = 196 bits (497), Expect = 2e-65
Identities = 112/258 (43%), Positives = 160/258 (62%), Gaps = 16/258 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQ-EIAIVFGREDR 119
IVDTL++A+ C +V GTSARSRT+PWP+LD R E + +V Q +A+VFGRE
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPR---ECGLKSVAEGQHAPVALVFGRERV 118
Query 120 GLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQV 179
GLTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA + Q + + ++
Sbjct 119 GLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPY 178
Query 180 TEKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRME 239
PLV+ +E FY HLE+ L+ F+ P +P + +LRRLF RA+ + E
Sbjct 179 ----------PLVD--DLERFYDHLEQTLLATGFIRPNHPGQVMNKLRRLFTRARPESQE 226
Query 240 YHLLRGIFSRVQALSHGK 257
++LRG+ + ++ + GK
Sbjct 227 LNILRGMLASIEQQNKGK 244
>A7MGX5 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
sakazakii (strain ATCC BAA-894)]
Length=245
Score = 196 bits (497), Expect = 2e-65
Identities = 113/257 (44%), Positives = 156/257 (61%), Gaps = 14/257 (5%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAS 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +AIVFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSE--ATHAPVAIVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA SQ Q
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLA----------SQDAQTP 169
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E + PLV+ +E FY HLE++L+ F+ P +P + +LRRLF RA+ + E
Sbjct 170 APGEEETPYPLVD--DLERFYGHLEQVLLSTGFIRPNHPGQVMNKLRRLFTRARPESQEL 227
Query 241 HLLRGIFSRVQALSHGK 257
++LRG+ + +++ + K
Sbjct 228 NILRGMLASIESSRNEK 244
>Q57LG7 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
choleraesuis (strain SC-B67)]
Length=243
Score = 195 bits (496), Expect = 2e-65
Identities = 113/257 (44%), Positives = 158/257 (61%), Gaps = 15/257 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N A +D ++M
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDA-ADHEEMPY- 177
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 178 ---------PLVD--DLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHGK 257
++LRGI + ++ + GK
Sbjct 227 NILRGILASIEQQNKGK 243
>Q6D257 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672)]
Length=241
Score = 194 bits (494), Expect = 4e-65
Identities = 110/251 (44%), Positives = 154/251 (61%), Gaps = 16/251 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGLS+L LV P P ALAAGA D++
Sbjct 2 LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGASDVIGNAT 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
+VD+L+QA++ C++V GTSARSRT+PWP+L+ R S A +A+VFGRE G
Sbjct 62 LVDSLDQALEGCNLVVGTSARSRTLPWPMLEPRECGVRS--AQEAEHAPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ IP N +Y LN+A A+Q+I YE+R+A L ++Q Q +
Sbjct 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPY--- 176
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ P + + +LRRLF RA+ + E
Sbjct 177 ---------PLVD--DLERFYQHLEQTLLQTGFIRPAHQGQVMNKLRRLFTRARPEAQEL 225
Query 241 HLLRGIFSRVQ 251
++LRGI S VQ
Sbjct 226 NILRGILSSVQ 236
>P66974 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=243
Score = 194 bits (493), Expect = 6e-65
Identities = 111/257 (43%), Positives = 155/257 (60%), Gaps = 15/257 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N A+ +
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEET---- 175
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 176 -------PYPLVD--DLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHGK 257
++LRGI + ++ + GK
Sbjct 227 NILRGILASIEQQNKGK 243
>P66975 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
typhi]
Length=243
Score = 194 bits (493), Expect = 6e-65
Identities = 111/257 (43%), Positives = 155/257 (60%), Gaps = 15/257 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N A+ +
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEET---- 175
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 176 -------PYPLVD--DLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHGK 257
++LRGI + ++ + GK
Sbjct 227 NILRGILASIEQQNKGK 243
>Q5PNG3 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
paratyphi A (strain ATCC 9150 / SARB42)]
Length=243
Score = 194 bits (493), Expect = 6e-65
Identities = 111/257 (43%), Positives = 155/257 (60%), Gaps = 15/257 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++ +
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAQ 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTN+EL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N A+ +
Sbjct 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEET---- 175
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
PLV+ +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 176 -------PYPLVD--DLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHGK 257
++LRGI + ++ + GK
Sbjct 227 NILRGILASIEQQNKGK 243
>Q8XA83 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O157:H7]
Length=245
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>Q3YZ20 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shigella
sonnei (strain Ss046)]
Length=245
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>Q32D32 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shigella
dysenteriae serotype 1 (strain Sd197)]
Length=245
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>A1AE69 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli O1:K1 / APEC]
Length=246
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>P0AE03 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shigella
flexneri]
Length=246
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>Q0T1Y7 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shigella
flexneri serotype 5b (strain 8401)]
Length=246
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>Q31XV8 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Shigella
boydii serotype 4 (strain Sb227)]
Length=246
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>P0AE01 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
coli (strain K12)]
Length=246
Score = 190 bits (482), Expect = 3e-63
Identities = 110/256 (43%), Positives = 153/256 (60%), Gaps = 15/256 (6%)
Query 1 LTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIK 60
L ++RIV+V T+ N+GS RAMKTMGL+ L LV P P ALAAGA D++
Sbjct 2 LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNAH 61
Query 61 IVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120
IVDTL++A+ C +V GTSARSRT+PWP+LD R S+ +A+VFGRE G
Sbjct 62 IVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSV--AEAANTPVALVFGRERVG 119
Query 121 LTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVT 180
LTNEEL +YH+ I N +Y LN+A A+QVI YE+RMA LA +N
Sbjct 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENG------------ 167
Query 181 EKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDPQNPRLLPLRLRRLFGRAQLDRMEY 240
E++E + + P +E FY HLE+ L+ F+ +P + +LRRLF RA+ + E
Sbjct 168 EQVEHE-ETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTRARPESQEL 226
Query 241 HLLRGIFSRVQALSHG 256
++LRGI + ++ + G
Sbjct 227 NILRGILASIEQQNKG 242
>P37005 Uncharacterized tRNA/rRNA methyltransferase LasT [Escherichia
coli (strain K12)]
Length=228
Score = 104 bits (259), Expect = 3e-30
Identities = 63/182 (35%), Positives = 97/182 (53%), Gaps = 2/182 (1%)
Query 4 VRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIKIVD 63
+ I++V NIG+A RAMKTMG S L +V + + P +A G+ D+++ IK+
Sbjct 3 ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVFP 62
Query 64 TLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGLTN 123
TL +++ D T+ARSR L ++ + A+VFGRED GLTN
Sbjct 63 TLAESLHDVDFTVATTARSRAKYHYYATPVELVPL-LEEKSSWMSHAALVFGREDSGLTN 121
Query 124 EELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTEKI 183
EELALA+ +P+ DY LN+ QA+ V CY++ + Q A++D ++Q +
Sbjct 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-ATLIQQPAKSDATADQHQLQALRER 180
Query 184 EM 185
M
Sbjct 181 AM 182
Score = 17.3 bits (33), Expect = 7.0
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 55 LVEKIKIVDTLEQAI 69
+ + IK+VD L+Q +
Sbjct 190 VADDIKLVDWLQQRL 204
>Q4JB16 tRNA (cytidine-2'-O-)-methyltransferase TrmJ [Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770)]
Length=235
Score = 79.3 bits (194), Expect = 7e-21
Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 7/206 (3%)
Query 4 VRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIKIVD 63
+R+V+V N+G R +K + + +V PK + I A G++ + + +KI +
Sbjct 3 IRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCDINEAIKFSAKGSEVIEKMMKITN 62
Query 64 TLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGLTN 123
+ AI+D + TS+ + I LL + + ++ +I + +++A +FGRE GLT
Sbjct 63 NFDDAIRDVDLKIATSSIA-DIKGDLL-RKSIRPIDLERLI-KDKKVAFIFGRESVGLTR 119
Query 124 EELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTEKI 183
EE+A +++ L IP N +Y VLN++ A+ ++ YE+ N + S+ +++ +
Sbjct 120 EEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYEL----WRNRDNKVPTVSSEPIKLIDDY 175
Query 184 EMDWDEPLVNHQQMEEFYPHLEKMLV 209
+ LVN + + Y L+++L+
Sbjct 176 SKKITDILVNKEATKSMYLVLKRVLI 201
>P37006 Uncharacterized tRNA/rRNA methyltransferase LasT [Serratia
marcescens]
Length=196
Score = 73.9 bits (180), Expect = 3e-19
Identities = 48/119 (40%), Positives = 69/119 (58%), Gaps = 19/119 (16%)
Query 48 LAAGAQDLVEKIKIVDTLEQAIQDCHIVFGTSARSRT------IPWPLLDARPAAELSMD 101
+A GA ++++ ++ TLEQA+ D T+ARSR P LL+ +LS
Sbjct 14 VAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLE-----QLS-- 66
Query 102 AVITRQQ---EIAIVFGREDRGLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEM 157
R+Q + A+VFGRED GLTNEELALA+ +P+ DY LN+ QA+ V CY++
Sbjct 67 ---ERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQL 122
>Q5SM16 tRNA (guanosine(18)-2'-O)-methyltransferase [Thermus thermophilus
(strain ATCC 27634 / DSM 579 / HB8)]
Length=194
Score = 41.2 bits (95), Expect = 9e-08
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 23/186 (12%)
Query 6 IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIKIVDTL 65
+++ N P N+ + LR +G+ + V P T P + + G+ V +++ L
Sbjct 25 VLLENVHKPHNLSAILRTCDAVGVLEAHAVNP-TGGVPTFNETSGGSHKWVY-LRVHPDL 82
Query 66 EQAIQDCH----IVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGL 121
+A + V+ T+ R DAR E+ + A++FG E G+
Sbjct 83 HEAFRFLKERGFTVYATALRE--------DARDFREVDYT------KPTAVLFGAEKWGV 128
Query 122 TNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTE 181
+ E LALA+ + IP+ LNV+ A VI +E + L D+ D + Q
Sbjct 129 SEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDPELYQ--- 185
Query 182 KIEMDW 187
K+ DW
Sbjct 186 KVLADW 191
>Q72GI1 tRNA (guanosine(18)-2'-O)-methyltransferase [Thermus thermophilus
(strain ATCC BAA-163 / DSM 7039 / HB27)]
Length=194
Score = 41.2 bits (95), Expect = 9e-08
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 23/186 (12%)
Query 6 IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIKIVDTL 65
+++ N P N+ + LR +G+ + V P T P + + G+ V +++ L
Sbjct 25 VLLENVHKPHNLSAILRTCDAVGVLEAHAVNP-TGGVPTFNETSGGSHKWVY-LRVHPDL 82
Query 66 EQAIQDCH----IVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGL 121
+A + V+ T+ R DAR E+ + A++FG E G+
Sbjct 83 HEAFRFLKERGFTVYATALRE--------DARDFREVDYT------KPTAVLFGAEKWGV 128
Query 122 TNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTE 181
+ E LALA+ + IP+ LNV+ A VI +E + L D+ D + Q
Sbjct 129 SEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDPELYQ--- 185
Query 182 KIEMDW 187
K+ DW
Sbjct 186 KVLADW 191
>P0AGJ2 tRNA (guanosine(18)-2'-O)-methyltransferase [Escherichia
coli (strain K12)]
Length=229
Score = 36.6 bits (83), Expect = 4e-06
Identities = 42/155 (27%), Positives = 69/155 (45%), Gaps = 20/155 (13%)
Query 6 IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYPHPDIDALAAGAQDLVEKIKIVDTL 65
+ M P N+ + +R +G+ ++ V P + A AAG+ V+ +K T+
Sbjct 22 VCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMASA-AAGSNSWVQ-VKTHRTI 79
Query 66 EQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQ----QEIAIVFGREDRGL 121
A+ A + +L A LS +AV R+ + I+ G+E G+
Sbjct 80 GDAV----------AHLKGQGMQIL----ATHLSDNAVDFREIDYTRPTCILMGQEKTGI 125
Query 122 TNEELALANYHLTIPVNTDYGVLNVAQAIQVICYE 156
T E LALA+ + IP+ LNV+ A +I YE
Sbjct 126 TQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160
Lambda K H a alpha
0.323 0.135 0.393 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1045108
Database: e5102588de87feffc0922666c26ccc31.SwissProt.fasta
Posted date: May 10, 2024 9:33 PM
Number of letters in database: 5,684
Number of sequences in database: 24
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
