BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: efef53037d94a8f82a7501031f5da49c.SwissProt.fasta
2 sequences; 1,104 total letters
Query= ACIAD2135
Length=84
Score E
Sequences producing significant alignments: (Bits) Value
Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)] 32.7 1e-06
B0R5T0 Transducer protein Htr8 [Halobacterium salinarum (strain A... 31.6 3e-06
>Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)]
Length=461
Score = 32.7 bits (73), Expect = 1e-06
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query 9 IAVLEADLKHMIEIMSYASDVAEQLNVMCKIIEEKADKHGDIKKLAH--VARCHAENWAN 66
IA DL+ M++ ++ D+ +LNV+ I+ D+ DI LA+ + + +EN +
Sbjct 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD 341
Query 67 VFDVD 71
+ D+D
Sbjct 342 IIDID 346
>B0R5T0 Transducer protein Htr8 [Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1)]
Length=643
Score = 31.6 bits (70), Expect = 3e-06
Identities = 26/77 (34%), Positives = 37/77 (48%), Gaps = 12/77 (16%)
Query 9 IAVLEADLKHMIEIMSYASDVAEQLNVM---CKIIEEKADKHGD--------IKKLAHVA 57
+ L+ L + EI+ SDVAEQ N++ I +ADK GD +K LA
Sbjct 437 VEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAEET 496
Query 58 RCHA-ENWANVFDVDRE 73
R A + A V D+D +
Sbjct 497 RASAGDIEALVADIDAQ 513
Lambda K H a alpha
0.326 0.137 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 62186
Database: efef53037d94a8f82a7501031f5da49c.SwissProt.fasta
Posted date: May 13, 2024 9:42 AM
Number of letters in database: 1,104
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40