BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 356ad884ef24e3309e2c3933d3d1ae0d.TrEMBL.fasta
13 sequences; 1,616 total letters
Query= ACIAD2139
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SBB2 Arc family DNA-binding protein [Acinetobacter sp] 269 8e-99
Q6FAH0 Arc-like DNA binding domain-containing protein [Acinetobac... 269 8e-99
A0A150I2S7 Arc-like DNA binding domain protein [Acinetobacter ven... 118 4e-39
A0A241W6H1 Arc-like DNA binding domain-containing protein [Acinet... 95.1 4e-30
N8YI35 Arc-like DNA binding domain-containing protein [Acinetobac... 80.1 6e-24
A0A1B2LZ52 Arc-like DNA binding domain-containing protein [Acinet... 73.9 5e-21
A0A5B0STM0 Arc family DNA-binding protein [Citrobacter portucalen... 65.5 1e-18
A0A1L6KLQ1 Arc family DNA-binding protein [Acinetobacter haemolyt... 63.5 4e-18
G7GFJ5 Arc-like DNA binding domain-containing protein [Acinetobac... 62.8 9e-18
A0A5B0W558 Arc family DNA-binding protein [Rhizobium tropici] 61.2 6e-17
A0A8B6X320 Arc family DNA-binding protein [Derxia gummosa DSM 723] 43.1 4e-10
G9HQL2 Alginate biosynthesis transcriptional activator [Pseudomon... 39.3 1e-08
Q9RPY7 Alginate and motility regulator Z [Pseudomonas aeruginosa] 37.7 4e-08
>A0A7G2SBB2 Arc family DNA-binding protein [Acinetobacter sp]
Length=137
Score = 269 bits (688), Expect = 8e-99
Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA 60
MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA
Sbjct 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA 60
Query 61 FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD 120
FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD
Sbjct 61 FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD 120
Query 121 NKDAILELLNNPKNLEE 137
NKDAILELLNNPKNLEE
Sbjct 121 NKDAILELLNNPKNLEE 137
>Q6FAH0 Arc-like DNA binding domain-containing protein [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=137
Score = 269 bits (688), Expect = 8e-99
Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA 60
MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA
Sbjct 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA 60
Query 61 FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD 120
FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD
Sbjct 61 FLRAQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSAD 120
Query 121 NKDAILELLNNPKNLEE 137
NKDAILELLNNPKNLEE
Sbjct 121 NKDAILELLNNPKNLEE 137
>A0A150I2S7 Arc-like DNA binding domain protein [Acinetobacter
venetianus]
Length=136
Score = 118 bits (296), Expect = 4e-39
Identities = 57/123 (46%), Positives = 86/123 (70%), Gaps = 0/123 (0%)
Query 8 LKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIAFLRAQAA 67
+++R+P ELK +I ESA RS +A++VARLE+SF+SFT+ +DFAHGYL A+LR Q A
Sbjct 10 VRLRVPPELKKQIEESAEQNNRSQSAEMVARLEKSFESFTTESVDFAHGYLSAYLRMQTA 69
Query 68 IYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKLLPFDSADNKDAILE 127
IY+ AI DL ++K P P+++ E RYK+L +E ++LI+ + F+ A NK+ +L
Sbjct 70 IYYHAISDLEKEYKKNPSPEVVQELKRYKVLLDETHRLIEQHNNDVQRFNGAQNKEKLLS 129
Query 128 LLN 130
+N
Sbjct 130 YIN 132
>A0A241W6H1 Arc-like DNA binding domain-containing protein [Acinetobacter
sp. ANC 3813]
Length=119
Score = 95.1 bits (235), Expect = 4e-30
Identities = 50/110 (45%), Positives = 67/110 (61%), Gaps = 3/110 (3%)
Query 7 QLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFT---SNKIDFAHGYLIAFLR 63
+ KVR+PQELKDKIT SA L RSINAD+VARLEESF+ T KI++ G+L +
Sbjct 8 EYKVRMPQELKDKITASAKELNRSINADIVARLEESFEGSTFTKEQKIEYGEGFLAGTVE 67
Query 64 AQAAIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKL 113
A A+Y + DL + P P+L E +YK L ++N L+ S + L
Sbjct 68 ALTALYSDLLSDLEKGYSNNPTPELFLEIEKYKFLLEKMNLLLHSKSQNL 117
>N8YI35 Arc-like DNA binding domain-containing protein [Acinetobacter
bereziniae NIPH 3]
Length=149
Score = 80.1 bits (196), Expect = 6e-24
Identities = 39/45 (87%), Positives = 43/45 (96%), Gaps = 0/45 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQS 45
MSREDPQLK+RLP ELKDKITESASNLGRSINADV+ARLE SF++
Sbjct 5 MSREDPQLKIRLPIELKDKITESASNLGRSINADVIARLESSFEN 49
>A0A1B2LZ52 Arc-like DNA binding domain-containing protein [Acinetobacter
larvae]
Length=211
Score = 73.9 bits (180), Expect = 5e-21
Identities = 37/43 (86%), Positives = 41/43 (95%), Gaps = 0/43 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESF 43
MSR DPQLK+RLP ELKDKITESA++LGRSINADVVARLE+SF
Sbjct 38 MSRVDPQLKLRLPLELKDKITESAASLGRSINADVVARLEQSF 80
Score = 14.2 bits (25), Expect = 9.0
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 121 NKDAILELLNNPKNL 135
+KD EL+ K+L
Sbjct 95 DKDLYKELIGMRKDL 109
>A0A5B0STM0 Arc family DNA-binding protein [Citrobacter portucalensis]
Length=110
Score = 65.5 bits (158), Expect = 1e-18
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 0/52 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKID 52
MSREDPQL+VRLPQELK+ I ESA RSINA++V RL +FQ+ N ID
Sbjct 1 MSREDPQLRVRLPQELKNNIKESAKLNRRSINAEIVTRLSHTFQTDNKNSID 52
>A0A1L6KLQ1 Arc family DNA-binding protein [Acinetobacter haemolyticus]
Length=90
Score = 63.5 bits (153), Expect = 4e-18
Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 0/46 (0%)
Query 7 QLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKID 52
+ KVR+PQELKDKI ESA L RS+NAD+VARLEESF+ NK++
Sbjct 8 EYKVRMPQELKDKIAESAKELNRSMNADIVARLEESFEQKNFNKLE 53
>G7GFJ5 Arc-like DNA binding domain-containing protein [Acinetobacter
sp. NBRC 100985]
Length=93
Score = 62.8 bits (151), Expect = 9e-18
Identities = 30/43 (70%), Positives = 36/43 (84%), Gaps = 0/43 (0%)
Query 10 VRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKID 52
+RLPQELKDKI ESA L RS+NAD+VARLEESF+ + NK+D
Sbjct 11 LRLPQELKDKIAESAKELNRSMNADIVARLEESFEQKSFNKLD 53
>A0A5B0W558 Arc family DNA-binding protein [Rhizobium tropici]
Length=114
Score = 61.2 bits (147), Expect = 6e-17
Identities = 45/116 (39%), Positives = 66/116 (57%), Gaps = 11/116 (9%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIA 60
M+REDPQLK+RL +ELK +T +A GRS+NA++V+RLE SF SN+ + A YL
Sbjct 1 MAREDPQLKLRLTEELKALVTNAAKANGRSVNAEIVSRLESSF----SNEDEIA--YLRD 54
Query 61 FLRAQAAIYH---AAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEKL 113
R I + + DL A +KE + +E+ R E+ + I +LE+ L
Sbjct 55 KDRENETIINRLTGMVQDLTAAAKKEREDEKENEEVRQ--YMREVEERISNLEKAL 108
>A0A8B6X320 Arc family DNA-binding protein [Derxia gummosa DSM
723]
Length=104
Score = 43.1 bits (100), Expect = 4e-10
Identities = 21/43 (49%), Positives = 29/43 (67%), Gaps = 0/43 (0%)
Query 2 SREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQ 44
SR Q VR P ++D+I E+A RS+NA++VARLE SF+
Sbjct 9 SRTAEQFVVRFPDGMRDRIAEAAKANNRSMNAEIVARLEASFK 51
>G9HQL2 Alginate biosynthesis transcriptional activator [Pseudomonas
fluorescens]
Length=108
Score = 39.3 bits (90), Expect = 1e-08
Identities = 18/41 (44%), Positives = 29/41 (71%), Gaps = 0/41 (0%)
Query 2 SREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEES 42
SR + VRLP ++++I E A N RS+N++++ARLE+S
Sbjct 11 SRTADKFVVRLPDGMRERIAEVARNHHRSMNSEIIARLEQS 51
>Q9RPY7 Alginate and motility regulator Z [Pseudomonas aeruginosa]
Length=108
Score = 37.7 bits (86), Expect = 4e-08
Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 0/41 (0%)
Query 2 SREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEES 42
SR + VRLP+ ++++I E A + RS+N++++ARLE+S
Sbjct 13 SRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQS 53
Lambda K H a alpha
0.321 0.137 0.378 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 129791
Database: 356ad884ef24e3309e2c3933d3d1ae0d.TrEMBL.fasta
Posted date: May 20, 2024 7:26 PM
Number of letters in database: 1,616
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
