BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bc1b39480a6fb6bf1ea3c68a70d9e0c6.SwissProt.fasta
1 sequences; 192 total letters
Query= ACIAD2165
Length=127
Score E
Sequences producing significant alignments: (Bits) Value
Q9NAH4 Density-regulated protein homolog [Caenorhabditis elegans] 33.1 4e-07
>Q9NAH4 Density-regulated protein homolog [Caenorhabditis elegans]
Length=192
Score = 33.1 bits (74), Expect = 4e-07
Identities = 21/48 (44%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query 44 AKHLLETGELEVEEIADDEPKAAPKSGRGGKGGKQNDAATDAAKAAGE 91
A LLE E+ E AD + K K RGGKG K AA AA + G+
Sbjct 56 APELLEGLEISDEPAADGDEKKKQK--RGGKGSKTGAAAAQAAASGGK 101
Score = 21.2 bits (43), Expect = 0.005
Identities = 16/47 (34%), Positives = 20/47 (43%), Gaps = 6/47 (13%)
Query 9 GSNAAFVFSGLATFSNGVAALVDEDVHKQLQKNKFAKHLLETGELEV 55
G + V GLATF +D V +L KFA TG E+
Sbjct 118 GKKSVTVIKGLATFD------IDLKVASKLFAQKFACGSSVTGADEI 158
Lambda K H a alpha
0.312 0.128 0.344 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 19250
Database: bc1b39480a6fb6bf1ea3c68a70d9e0c6.SwissProt.fasta
Posted date: May 20, 2024 7:34 PM
Number of letters in database: 192
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40