BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8feef56d27488910c777443cf754f854.SwissProt.fasta
           1 sequences; 92 total letters



Query= ACIAD2182

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q7A225 Endoribonuclease HigB [Proteus vulgaris]                       83.6    9e-28


>Q7A225 Endoribonuclease HigB [Proteus vulgaris]
Length=92

 Score = 83.6 bits (205),  Expect = 9e-28
 Identities = 41/98 (42%), Positives = 64/98 (65%), Gaps = 6/98 (6%)

Query  1   MIKSFRHKGLKKFFESGSTAGIQPAHKNRLARQLHQLNVASCPDDMNLPGWGLHLLQGKN  60
           MIKSF+HKGLK  FE G T+G+     +R+  +L  ++ A+   ++N   + LH L+G  
Sbjct  1   MIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKG--  58

Query  61  PKKQDVDGHYSISVNGNWRLTFYFDHGDAVLVDYQDYH  98
               D +G++SI+V  NWR+TF F +GDA +++Y+DYH
Sbjct  59  ----DREGYWSITVRANWRITFQFINGDAYILNYEDYH  92



Lambda      K        H        a         alpha
   0.326    0.142    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 7298


  Database: 8feef56d27488910c777443cf754f854.SwissProt.fasta
    Posted date:  May 20, 2024  10:36 AM
  Number of letters in database: 92
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40