BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 4944a21e43d111d56e7a20677b734f94.SwissProt.fasta
           1 sequences; 284 total letters



Query= ACIAD2306

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P42638 Tropomyosin-2 [Schistosoma mansoni]                            28.1    2e-04


>P42638 Tropomyosin-2 [Schistosoma mansoni]
Length=284

 Score = 28.1 bits (61),  Expect = 2e-04
 Identities = 27/122 (22%), Positives = 52/122 (43%), Gaps = 17/122 (14%)

Query  23   DLNRAVAEGLVFADQDEFYQLAK-----TILVKD-ERFFDKFDRAI----------KDYF  66
            D  R V E   FAD++   QL +     T + +D +R +D+  R +          +   
Sbjct  124  DRGRKVLENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAITEVELERAESRL  183

Query  67   EGIETFDLDELLKQVQKIPKEWLDLELLEKHLTPEQREALQKAGSLEELMKMLEERLREQ  126
            E  E+  + EL ++++ +      LE+ E+     +    +    L E +K  E+R +E 
Sbjct  184  EAAES-KITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTERLKAAEDRAQES  242

Query  127  HK  128
             +
Sbjct  243  ER  244


 Score = 16.9 bits (32),  Expect = 0.73
 Identities = 26/109 (24%), Positives = 42/109 (39%), Gaps = 16/109 (15%)

Query  38   DEFYQLAKTILVKDERFFDKFDRAIKDYFEGIETFDLDELLKQVQKIPKEWLDLELLEKH  97
            DE  QL   +  K+     K D  + +  + I+  D D+   Q Q + +    LE  +K 
Sbjct  20   DEADQLEAKLREKELEMQTK-DEEVAEVLKKIQQVDTDKETAQTQ-LAETNTKLEETDKR  77

Query  98   LTPEQRE--ALQKA------------GSLEELMKMLEERLREQHKKHQG  132
             T  + E  +LQK               L+E    LEE  +   +  +G
Sbjct  78   ATEAEAEVASLQKRIRQLEDELESTETRLQEATVKLEEASKAADESDRG  126



Lambda      K        H        a         alpha
   0.323    0.139    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 94208


  Database: 4944a21e43d111d56e7a20677b734f94.SwissProt.fasta
    Posted date:  Jun 1, 2024  10:06 PM
  Number of letters in database: 284
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40