BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6675baa79be5289ce2989a032dc8c3fa.SwissProt.fasta
           4 sequences; 1,021 total letters



Query= ACIAD2334

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O31916 Abasic site processing protein YoqW [Bacillus subtilis (st...  65.9    3e-17
O64131 SOS response-associated protein yoqW [Bacillus phage SPbeta]   65.9    3e-17
O34915 Abasic site processing protein YobE [Bacillus subtilis (st...  63.5    2e-16
Q5NVR0 Abasic site processing protein HMCES [Pongo abelii]            39.3    9e-08


>O31916 Abasic site processing protein YoqW [Bacillus subtilis 
(strain 168)]
Length=224

 Score = 65.9 bits (159),  Expect = 3e-17
 Identities = 59/214 (28%), Positives = 97/214 (45%), Gaps = 27/214 (13%)

Query  4    MCANFKPLTL--DQLKQLN----LPAITFDYMDEVYPGYKLPLLFKSNSGLEWREVMFGL  57
            MC  F   +   D ++Q N    LP   +     V P   +  +    S     ++ +GL
Sbjct  1    MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL  60

Query  58   VPKWATDLDIAKKTYNARNETLLQKASFYDSM--RKCQFGVIPVTEFYEAKYIDGK---P  112
            +P WA D  I  K  NAR ETL +K SF   +  ++C   +IP   FYE K +D K   P
Sbjct  61   IPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRC---IIPADSFYEWKRLDPKTKIP  117

Query  113  QRWCVRRKDHQAFYIAALYEICKI-DDKIVRSASMITMDAIDHPMMREFHEPGDIKRSVI  171
             R  ++ K    F  A LYE     +   + + ++IT     + +M + H+     R  +
Sbjct  118  MR--IKLKSSNLFAFAGLYEKWNTPEGNPLYTCTIITTK--PNELMEDIHD-----RMPV  168

Query  172  VIPHEHLDEWLSLKNPD---IQKFVEGFPVEEFE  202
            ++  E+  EWL+ KN D   +Q  ++ +  ++ E
Sbjct  169  ILTDENEKEWLNPKNTDPDYLQSLLQPYDADDME  202


>O64131 SOS response-associated protein yoqW [Bacillus phage SPbeta]
Length=224

 Score = 65.9 bits (159),  Expect = 3e-17
 Identities = 59/214 (28%), Positives = 97/214 (45%), Gaps = 27/214 (13%)

Query  4    MCANFKPLTL--DQLKQLN----LPAITFDYMDEVYPGYKLPLLFKSNSGLEWREVMFGL  57
            MC  F   +   D ++Q N    LP   +     V P   +  +    S     ++ +GL
Sbjct  1    MCGRFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL  60

Query  58   VPKWATDLDIAKKTYNARNETLLQKASFYDSM--RKCQFGVIPVTEFYEAKYIDGK---P  112
            +P WA D  I  K  NAR ETL +K SF   +  ++C   +IP   FYE K +D K   P
Sbjct  61   IPPWAKDEKIGYKMINARAETLSEKPSFRKPLVSKRC---IIPADSFYEWKRLDPKTKIP  117

Query  113  QRWCVRRKDHQAFYIAALYEICKI-DDKIVRSASMITMDAIDHPMMREFHEPGDIKRSVI  171
             R  ++ K    F  A LYE     +   + + ++IT     + +M + H+     R  +
Sbjct  118  MR--IKLKSSNLFAFAGLYEKWNTPEGNPLYTCTIITTK--PNELMEDIHD-----RMPV  168

Query  172  VIPHEHLDEWLSLKNPD---IQKFVEGFPVEEFE  202
            ++  E+  EWL+ KN D   +Q  ++ +  ++ E
Sbjct  169  ILTDENEKEWLNPKNTDPDYLQSLLQPYDADDME  202


>O34915 Abasic site processing protein YobE [Bacillus subtilis 
(strain 168)]
Length=219

 Score = 63.5 bits (153),  Expect = 2e-16
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query  4    MCANFKPLTL--DQLKQLN----LPAITFDYMDEVYPGYKLPLLFKSNSGLEWREVMFGL  57
            MC  F   +   D ++Q N    LP   +     V P   +  +    S     ++ +GL
Sbjct  1    MCGKFTLFSEFDDIIEQFNIDQFLPEGEYHPSYNVAPSQNILTIINDGSNNRLGKLRWGL  60

Query  58   VPKWATDLDIAKKTYNARNETLLQKASFYDSM--RKCQFGVIPVTEFYEAKYIDGK---P  112
            +P  A D  I  K  NAR ETL +K SF   +  ++C   +IP   FYE K +D K   P
Sbjct  61   IPPCAKDEKIGYKMINARAETLAEKPSFRKPLGSKRC---IIPADSFYEWKRLDPKTKIP  117

Query  113  QRWCVRRKDHQAFYIAALYEICK-IDDKIVRSASMITMDAIDHPMMREFHEPGDIKRSVI  171
             R  ++ K    F  A LYE    ++  ++ + ++IT+   +  +M + H+     R  +
Sbjct  118  MR--IKLKSSNLFAFAGLYEKWNTLEGNLLYTCTIITIKPSE--LMEDIHD-----RMPV  168

Query  172  VIPHEHLDEWLSLKNPD  188
            ++  E+  EWL+ KN D
Sbjct  169  ILTDENKKEWLNPKNTD  185


>Q5NVR0 Abasic site processing protein HMCES [Pongo abelii]
Length=354

 Score = 39.3 bits (90),  Expect = 9e-08
 Identities = 23/63 (37%), Positives = 34/63 (54%), Gaps = 3/63 (5%)

Query  55   FGLVPKWATDLDIAK---KTYNARNETLLQKASFYDSMRKCQFGVIPVTEFYEAKYIDGK  111
            +GLVP W  + D +K    T N RN+T+++K SF   + K +  V+    FYE +   G 
Sbjct  75   WGLVPSWFKESDPSKLQFNTTNCRNDTIMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGT  134

Query  112  PQR  114
             QR
Sbjct  135  NQR  137


 Score = 16.2 bits (30),  Expect = 2.5
 Identities = 4/8 (50%), Positives = 7/8 (88%), Gaps = 0/8 (0%)

Query  180  EWLSLKNP  187
            +WL+ K+P
Sbjct  289  QWLATKSP  296


 Score = 15.0 bits (27),  Expect = 5.7
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query  42   FKSNSGLEWREVMFGLVPKW----ATDLDIAKKTYN  73
            F   S L  +    GL+ +W      +  +AK+ Y+
Sbjct  318  FLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKRPYS  353



Lambda      K        H        a         alpha
   0.326    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 170563


  Database: 6675baa79be5289ce2989a032dc8c3fa.SwissProt.fasta
    Posted date:  May 20, 2024  2:45 PM
  Number of letters in database: 1,021
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40